dashboard-config.yml

title: OBO Dashboard
description: Quality control for all OBO Foundry ontologies. Under construction.
obo_score_weights:
  no_base:
    impact_factor: 5
    max_impact: 5
  overall_error:
    impact_factor: 5
    max_impact: 20
  overall_warning:
    impact_factor: 0.5
    max_impact: 10
  overall_info:
    impact_factor: 0.1
    max_impact: 5
  report_errors:
    impact_factor: 0.05
    max_impact: 10
  report_warning:
    impact_factor: 0.01
    max_impact: 5
  report_info:
    impact_factor: 0.005
    max_impact: 3
  impact:
    impact_factor: 3
    max_impact: 3
  dashboard:
    impact_factor: 2
    max_impact: 2
  reuse:
    impact_factor: 1
    max_impact: 1
ontologies:
  #registry: "https://raw.githubusercontent.com/OBOFoundry/OBOFoundry.github.io/master/registry/ontologies.yml"
  custom:
    - id: agro
    - id: omo
    - id: ro
    #- id: genepio
    # - id: covoc
    #   mirror_from: "https://raw.githubusercontent.com/EBISPOT/covoc/master/covoc.owl"
    #   license:
    #     label: CC-BY
    #     logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
    #     url: http://creativecommons.org/licenses/by/4.0/
    # - id: testx
    # - id: wbphenotype
    # - id: gombo
    #   mirror_from: "https://raw.githubusercontent.com/BridgetSquidget/gombo/main/gombo_v1.owx"
    #   title: General Ontology for Marine Bioluminescent Organs
    #   contact:
    #     email: bridget.vincent@lifesci.ucsb.edu
    #     label: Bridget Vincent
    #     description: An ontology describing the structures in the bioluminescent components of marine animals.
    #   domain: anatomy
    #   homepage: https://github.com/BridgetSquidget/gombo/blob/main/gombo_v1.owx
    #   products:
    #     - id: gombo.owl
    #     - id: gombo.obo
    #   dependencies:
    #     - id: uberon
    #     - id: afm
    #     - id: cl
    #     - id: ncit
    #     - id: fma
    #     - id: spd
    #     - id: zfa
    #     - id: plana
    #     - id: go
    #     - id: chebi
    #     - id: ms
    #     - id: bao
    #     - id: ogi
    #     - id: scdo
    #     - id: so
    #     - id: pr
    #     - id: obi
    #     - id: txpo
    #     - id: xco
    #     - id: mod
    #     - id: nbitaxon
    #     - id: ceph
    #     - id: xao
    #     - id: emapa
    #     - id: aeo
    #     - id: mc
    #     - id: mpath
    #   tracker: https://github.com/BridgetSquidget/gombo/issues
    #   license:
    #     url: https://creativecommons.org/licenses/by/4.0/
    #     label: CC BY 4.0
prefer_base: True
profile:
  baseprofile: "https://raw.githubusercontent.com/ontodev/robot/master/robot-core/src/main/resources/report_profile.txt"
  #custom:
  #  - "WARN\tfile:./sparql/missing_xrefs.sparql"
robot_additional_prefixes:
  COVOC: "http://purl.obolibrary.org/obo/COVOC_"
  CIDO: "http://purl.obolibrary.org/obo/CIDO_"
  dbpedia: "http://dbpedia.org/resource/"
  EFO: "http://www.ebi.ac.uk/efo/EFO_"
  ONTONEO: "http://purl.bioontology.org/OntONeo/ONTONEO_"
report_truncation_limit: 300
redownload_after_hours: 10
force_regenerate_dashboard_after_hours: 0
skip_existing: False
dashboard_report_timeout_seconds: 100
environment:
  ROBOT_JAR: build/robot.jar
  ROBOT: robot