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@Noble-Lab

Noble Lab Department of Genome Sciences UW

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  1. casanovo casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Python 116 39

  2. crema crema Public

    Confidence Estimation for Mass Spectrometry Proteomics

    Python 12 1

  3. Pepper Pepper Public

    Peptide coefficient predictor

    Jupyter Notebook 9 2

  4. Carafe Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Java 9 1

  5. 2023-prot-impute-benchmark 2023-prot-impute-benchmark Public

    The GitHub repository accompanying our 2023 quantitative proteomics imputation methods benchmarking study

    Jupyter Notebook 8

  6. Polarbear Polarbear Public

    Polarbear translates between different single-cell data modalities

    Python 7 2

Repositories

Showing 10 of 34 repositories
  • casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Noble-Lab/casanovo’s past year of commit activity
    Python 116 Apache-2.0 39 28 (2 issues need help) 5 Updated Nov 27, 2024
  • Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Noble-Lab/Carafe’s past year of commit activity
    Java 9 Apache-2.0 1 2 0 Updated Nov 25, 2024
  • cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Noble-Lab/cascadia’s past year of commit activity
    Python 6 Apache-2.0 3 1 0 Updated Nov 22, 2024
  • multi-species-benchmark Public
    Noble-Lab/multi-species-benchmark’s past year of commit activity
    Python 1 0 0 0 Updated Nov 8, 2024
  • FDRBench Public

    Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

    Noble-Lab/FDRBench’s past year of commit activity
    Java 7 Apache-2.0 1 2 0 Updated Oct 31, 2024
  • lupine Public

    Mass spectrometry proteomics imputation with a multilayer perceptron

    Noble-Lab/lupine’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 23, 2024
  • twinc Public

    TwinC: Twin CNN model for 3D genome folding

    Noble-Lab/twinc’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Sep 25, 2024
  • 2024_proteomics_impute Public

    Code used to generate figures in our 2024 manuscript on mass spectrometry proteomics imputation

    Noble-Lab/2024_proteomics_impute’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 12, 2024
  • CellCycleNet Public

    Predicting cell cycle stage from 3D single-cell nuclear-stained images

    Noble-Lab/CellCycleNet’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Sep 9, 2024
  • Sunbear Public

    single cell multimodal/multicondition temporal model

    Noble-Lab/Sunbear’s past year of commit activity
    Python 1 0 0 0 Updated Aug 27, 2024
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