NAMESPACE

# Generated by roxygen2: do not edit by hand

export(MATfeatures)
export(MATplot)
export(PC1calling)
export(TADdiff)
export(TADplot)
export(TADshuffling)
export(areaCov)
export(areaHist)
export(bgCorr)
export(boundArea)
export(boundary2domain)
export(compOrientation)
export(cool2matrix)
export(dataframes2grange)
export(domainCov)
export(domainHist)
export(geneTADtopo)
export(mMATplot)
export(mTADplot)
export(matObsExp)
import(GenomeInfoDb)
import(GenomicRanges)
import(Gviz)
import(ggplot2)
import(methods)
import(rtracklayer)
importClassesFrom(Matrix,dgCMatrix)
importFrom(BiocGenerics,sort)
importFrom(BiocGenerics,t)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqnames)
importFrom(IRanges,"%outside%")
importFrom(IRanges,IRanges)
importFrom(IRanges,coverage)
importFrom(IRanges,distance)
importFrom(IRanges,ranges)
importFrom(Matrix,diag)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,summary)
importFrom(Matrix,tril)
importFrom(Matrix,triu)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,aggregate)
importFrom(S4Vectors,runmean)
importFrom(S4Vectors,split)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(plyr,ddply)
importFrom(preprocessCore,normalize.quantiles)
importFrom(rhdf5,h5read)
importFrom(scales,unit_format)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,toeplitz)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(utils,read.table)
importFrom(viridis,scale_fill_viridis)