run_tests.yml

name: Run tests
on:
  push:
    branches:
      - dev
    tags-ignore:  # exclude tags created by "ci_addons publish_github_release"
      - 'latest'
      - 'latest-tmp'
  pull_request:

jobs:
  run-tests:
    name: ${{ matrix.name }}
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash
    strategy:
      fail-fast: false
      matrix:
        include:
          - { name: linux-python3.9-minimum      , test-tox-env: py39-minimum    , build-tox-env: build-py39-minimum   , python-ver: "3.9" , os: ubuntu-latest }
          # NOTE config below with "upload-wheels: true" specifies that wheels should be uploaded as an artifact
          - { name: linux-python3.13-upgraded    , test-tox-env: py313-upgraded  , build-tox-env: build-py313-upgraded , python-ver: "3.13", os: ubuntu-latest , upload-wheels: true }
          - { name: windows-python3.9-minimum    , test-tox-env: py39-minimum    , build-tox-env: build-py39-minimum   , python-ver: "3.9" , os: windows-latest }
          - { name: windows-python3.13-upgraded  , test-tox-env: py313-upgraded  , build-tox-env: build-py313-upgraded , python-ver: "3.13", os: windows-latest }
          - { name: macos-python3.9-minimum      , test-tox-env: py39-minimum    , build-tox-env: build-py39-minimum   , python-ver: "3.9" , os: macos-latest }
    steps:
      - name: Cancel non-latest runs
        uses: styfle/cancel-workflow-action@0.11.0
        with:
          all_but_latest: true
          access_token: ${{ github.token }}

      - uses: actions/checkout@v4
        with:
          submodules: 'recursive'
          fetch-depth: 0  # tags are required for versioneer to determine the version

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-ver }}

      - name: Install build dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install tox
          python -m pip list

      - name: Run tox tests
        run: |
          tox -e ${{ matrix.test-tox-env }}

      - name: Build wheel and source distribution
        run: |
          tox -e ${{ matrix.build-tox-env }}
          ls -1 dist

      - name: Test installation from a wheel
        run: |
          tox -e wheelinstall --recreate --installpkg dist/*-none-any.whl

      - name: Upload distribution as a workspace artifact
        if: ${{ matrix.upload-wheels }}
        uses: actions/upload-artifact@v4
        with:
          name: distributions
          path: dist

  run-gallery-tests:
    name: ${{ matrix.name }}
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash
    strategy:
      fail-fast: false
      matrix:
        include:
          - { name: linux-gallery-python3.9-minimum    , test-tox-env: gallery-py39-minimum  , python-ver: "3.9" , os: ubuntu-latest }
          - { name: linux-gallery-python3.13-upgraded  , test-tox-env: gallery-py313-upgraded, python-ver: "3.13", os: ubuntu-latest }
          - { name: windows-gallery-python3.9-minimum  , test-tox-env: gallery-py39-minimum  , python-ver: "3.9" , os: windows-latest }
          - { name: windows-gallery-python3.13-upgraded, test-tox-env: gallery-py313-upgraded, python-ver: "3.13", os: windows-latest }
    steps:
      - name: Cancel non-latest runs
        uses: styfle/cancel-workflow-action@0.11.0
        with:
          all_but_latest: true
          access_token: ${{ github.token }}

      - uses: actions/checkout@v4
        with:
          submodules: 'recursive'
          fetch-depth: 0  # tags are required for versioneer to determine the version

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-ver }}

      - name: Install build dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install tox
          python -m pip list

      - name: Run tox tests
        run: |
          tox -e ${{ matrix.test-tox-env }}

  run-tests-on-conda:
    name: ${{ matrix.name }}
    runs-on: ubuntu-latest
    defaults:
     run:
       shell: bash -l {0}  # necessary for conda
    strategy:
      fail-fast: false
      matrix:
        include:
          - { name: conda-linux-python3.9-minimum    , test-tox-env: py39-minimum    , build-tox-env: build-py39-minimum    , python-ver: "3.9" , os: ubuntu-latest }
          - { name: conda-linux-python3.13-upgraded  , test-tox-env: py313-upgraded  , build-tox-env: build-py313-upgraded  , python-ver: "3.13", os: ubuntu-latest }
    steps:
      - name: Cancel non-latest runs
        uses: styfle/cancel-workflow-action@0.11.0
        with:
          all_but_latest: true
          access_token: ${{ github.token }}

      - uses: actions/checkout@v4
        with:
          submodules: 'recursive'
          fetch-depth: 0  # tags are required for versioneer to determine the version

      - name: Set up Conda
        uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          python-version: ${{ matrix.python-ver }}

      - name: Install build dependencies
        run: |
          conda config --set always_yes yes --set changeps1 no
          conda info
          conda install -c conda-forge tox

      - name: Conda reporting
        run: |
          conda info
          conda config --show-sources
          conda list --show-channel-urls

      - name: Run tox tests
        run: |
          tox -e ${{ matrix.test-tox-env }}

      - name: Build wheel and source distribution
        run: |
          tox -e ${{ matrix.build-tox-env }}
          ls -1 dist

      - name: Test installation from a wheel
        run: |
          tox -e wheelinstall --recreate --installpkg dist/*-none-any.whl

  run-ros3-tests:  # tox and conda do not play nicely so do not use tox here
    name: ${{ matrix.name }}
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -l {0}  # necessary for conda
    strategy:
      fail-fast: false
      matrix:
        include:
          - { name: conda-linux-python3.13-ros3  , python-ver: "3.13", os: ubuntu-latest }
    steps:
      - name: Cancel non-latest runs
        uses: styfle/cancel-workflow-action@0.11.0
        with:
          all_but_latest: true
          access_token: ${{ github.token }}

      - uses: actions/checkout@v4
        with:
          submodules: 'recursive'
          fetch-depth: 0  # tags are required for versioneer to determine the version

      - name: Set up Conda
        uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          activate-environment: ros3
          environment-file: environment-ros3.yml
          python-version: ${{ matrix.python-ver }}
          channels: conda-forge
          auto-activate-base: false

      - name: Install run dependencies
        run: |
          pip install -r requirements-dev.txt
          pip install .
          conda info
          conda list
          pip list

      - name: Run gallery ros3 tests
        run: |
          python test.py --ros3

  run-gallery-ros3-tests:
    name: ${{ matrix.name }}
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -l {0}  # necessary for conda
    strategy:
      fail-fast: false
      matrix:
        include:
          - { name: conda-linux-gallery-python3.13-ros3  , python-ver: "3.13", os: ubuntu-latest }
    steps:
      - name: Cancel non-latest runs
        uses: styfle/cancel-workflow-action@0.11.0
        with:
          all_but_latest: true
          access_token: ${{ github.token }}

      - uses: actions/checkout@v4
        with:
          submodules: 'recursive'
          fetch-depth: 0  # tags are required for versioneer to determine the version

      - name: Set up Conda
        uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          activate-environment: ros3
          environment-file: environment-ros3.yml
          python-version: ${{ matrix.python-ver }}
          channels: conda-forge
          auto-activate-base: false

      - name: Install run dependencies
        run: |
          pip install matplotlib
          pip install .
          pip list

      - name: Conda reporting
        run: |
          conda info
          conda config --show-sources
          conda list --show-channel-urls

      - name: Run gallery ros3 tests
        run: |
          python test.py --example-ros3

  deploy-dev:
    name: Deploy pre-release from dev
    needs: [run-tests, run-gallery-tests, run-tests-on-conda, run-ros3-tests, run-gallery-ros3-tests]
    if: ${{ github.event_name == 'push' }}
    runs-on: ubuntu-latest
    steps:
      - name: Cancel non-latest runs
        uses: styfle/cancel-workflow-action@0.11.0
        with:
          all_but_latest: true
          access_token: ${{ github.token }}

      - name: Checkout repo with submodules
        uses: actions/checkout@v4
        with:
          submodules: 'recursive'
          fetch-depth: 0  # tags are required for versioneer to determine the version

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.13'

      - name: Download wheel and source distributions from artifact
        uses: actions/download-artifact@v4
        with:
          name: distributions
          path: dist

      - name: Publish wheel and source distributions as a GitHub release
        run: |
          python -m pip install --upgrade pip
          python -m pip install scikit-ci-addons
          ci_addons publish_github_release NeurodataWithoutBorders/pynwb  \
              --prerelease-packages "dist/*" \
              --prerelease-sha $GITHUB_SHA \
              --prerelease-packages-clear-pattern "*" \
              --prerelease-packages-keep-pattern "*dev<COMMIT_DISTANCE>*" \
              --token ${{ secrets.BOT_GITHUB_TOKEN }} \
              --re-upload