From c858ecfedbafe06d37eed7328081bc020265810f Mon Sep 17 00:00:00 2001 From: Cody Baker <51133164+CodyCBakerPhD@users.noreply.github.com> Date: Wed, 28 Jun 2023 15:49:32 -0400 Subject: [PATCH] update for new release --- CHANGELOG.md | 29 +++++++++++++++++++++++++++-- 1 file changed, 27 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index f090ff2bf..a8d63cc21 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,16 +1,29 @@ # Upcoming + +# v0.4.29 + +* Support for Python 3.7 has officially been dropped by the NWB Inspector. Please use Python 3.8 and above. [#380](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/380) + ### Fixes -* `check_time_interval_time_columns` now only checks for `start_time` with `is_ascending_series` . [#382](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/382) + +* `check_time_interval_time_columns` now only checks for `start_time` with `is_ascending_series`. [#382](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/382) + +* `is_acending_series` no longer asserts series to be strictly monotonic. [#374](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/374) + + # v0.4.28 ### Pending Deprecation (API) + * To reduce ambiguity of the new intermediate workflow calls in the API, `inspect_nwb` will be deprecated in the next major release. It is replaced by either `inspect_nwbfile` (applied to a written file on disk) or `inspect_nwbfile_object` (an open object in memory). [#364](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/364) ### New Checks + * Added support for new options to `subject.sex` (`XX` or `XO`) conditional on the `subject.species` being either "C. elegens" or "Caenorhabditis elegens". [#353](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/353) ### Improvements + * Added an intermediate workflow to the main `nwbinspector` call pattern, named `inspect_nwbfile_object`. [#364](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/364) @@ -18,6 +31,7 @@ # v0.4.27 ### Fixes + * Added a false positive skip condition to `check_binary_columns` when applied to special tables with pre-defined columns, such as the `electrodes` of `Units`. [#349](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/349) @@ -25,7 +39,9 @@ # v0.4.26 ### Fixes + * Added a false positive skip condition to `check_timestamps_match_first_dimension` when applied to an `ImageSeries` that is using an `external_file` and therefore has an empty array set to `data`, but could have non-empty irregular `timestamps` for the video. [PR #335](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/335) + * Fixed the skip condition for `images` checks that were incorrectly run when using PyNWB v2.0.0. [PR #341](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/341) @@ -33,6 +49,7 @@ # v0.4.25 ### Improvements + * The version of the NWB Inspector can now be returned directly from the CLI via the `--version` flag. [PR # 333](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/333) @@ -40,12 +57,14 @@ # v0.4.24 ### Dependencies + * Loosened upper bound of numpy version. [PR # 330](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/330) # v0.4.23 ### New Checks + * Added check `check_index_series_points_to_image` to additionally about future deprecation of `indexed_timeseries` linked in `IndexSeries`. [# 322](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/322) @@ -53,6 +72,7 @@ # v0.4.22 ### Fixes + * Add a special skip condition to `check_timestamps_match_first_dimension` when an `IndexSeries` uses an `ImageSeries` as a target. [PR #321](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/321) @@ -60,11 +80,13 @@ # v0.4.21 ### New Checks -* Added check for unique ids for DynamicTables. [PR #316](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/316) +* Added check for unique ids for DynamicTables. [PR #316](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/316) ### Fixes + * Fix `check_subject_proper_age_range` to parse years. [PR #314](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/314) + * Write a custom `get_data_shape` method that does not return `maxshape`, which fixes errors in parsing shape. [PR #315](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/315) @@ -74,6 +96,7 @@ ### Improvements * Added compression size consideration to `check_image_series_size`. [PR #311](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/311) + * Added false positive skip condition for `check_image_series_size` for `TwoPhotonSeries` neurodata types. [PR #301](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/301) ### Testing @@ -84,6 +107,8 @@ * Fixed issue in `run_checks` following [PR #303](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/303) that prevented iteration over certain check output types. [PR #306](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/306) + + # v0.4.19 ### Fixes