From 6538852b581b761a62ba1aec03dd6effb28cf9c1 Mon Sep 17 00:00:00 2001 From: rly Date: Thu, 7 Nov 2024 22:32:43 -0800 Subject: [PATCH 1/5] Add initial Cosyne2025 info --- Cosyne_2025/README.md | 45 +++++++++++++++++++++++++++++++++++++++++++ README.md | 1 + 2 files changed, 46 insertions(+) create mode 100644 Cosyne_2025/README.md diff --git a/Cosyne_2025/README.md b/Cosyne_2025/README.md new file mode 100644 index 000000000..5a9cdd9cb --- /dev/null +++ b/Cosyne_2025/README.md @@ -0,0 +1,45 @@ +

+ +

+ +# Welcome to the NWB & DANDI Tutorial at COSYNE 2025! + +The [Neurodata Without Borders (NWB)](https://www.nwb.org/) team is holding a tutorial on the NWB data standard and [DANDI Archive](https://www.dandiarchive.org/) during the [tutorial session of COSYNE 2025](https://www.cosyne.org/tutorials). + + + +Bring your laptop to work along with the demonstration. To get familiar with NWB and DANDI prior to attending, please refer to this [documentation](https://nwb-overview.readthedocs.io/en/latest/index.html). + + +## Registration + +There is NO additional fee to attend. When registering for the main meeting, select the "NWB Data Standard and DANDI Archive for Neurophysiology Data Tutorial". + + +## Dates and Location + +* **Date/Time:** March 27, 2025, 9:00 - 10:30 AM +* **Location:** Agora-Centreville Room, Fairmont Queen Elizabeth, Montreal, QC, Canada + + +## Tutorial Program (tentative) + +TBA + + +## Organizing Committee + +* Ryan Ly, LBNL +* Ben Dichter, CatalystNeuro + + +## Materials + +TBA + + +## Learn more! + +Learn more about upcoming and past NWB events on our [main page](https://neurodatawithoutborders.github.io/nwb_hackathons/). + +New to NWB? Learn more about the NWB software ecosystem, how to convert data to NWB, how to read data in NWB, and much more in our [NWB Overview website](https://nwb-overview.readthedocs.io/). diff --git a/README.md b/README.md index d51b37c8a..bb08dd67d 100644 --- a/README.md +++ b/README.md @@ -3,6 +3,7 @@ ## Hackathon Events ### Upcoming Events +- [Cosyne: March 2025](Cosyne_2025/README.md) - A tutorial session on NWB and DANDI will be held during the Computational and Systems Neuroscience (COSYNE) 2025 conference in Montreal, Canada on **March 27, 2025**. ### Past Events - [NWB and DANDI Workshop INCF: September 2024](Workshop_2024_INCF/README.md) - **September 26-27, 2024** in Austin, Texas, USA. From 96e02a405522842b73fae1f4f1c97ce24aeab533 Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Sat, 9 Nov 2024 12:23:05 -0800 Subject: [PATCH 2/5] Update README.md --- Cosyne_2025/README.md | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/Cosyne_2025/README.md b/Cosyne_2025/README.md index 5a9cdd9cb..649597099 100644 --- a/Cosyne_2025/README.md +++ b/Cosyne_2025/README.md @@ -6,14 +6,19 @@ The [Neurodata Without Borders (NWB)](https://www.nwb.org/) team is holding a tutorial on the NWB data standard and [DANDI Archive](https://www.dandiarchive.org/) during the [tutorial session of COSYNE 2025](https://www.cosyne.org/tutorials). +The goal of this tutorial is to teach you how to share your neurophysiology data using the [Neurodata Without Borders (NWB)](https://www.nwb.org/) data standard and the [DANDI Archive](https://www.dandiarchive.org/) and how to use NWB data available on DANDI. NWB standardizes the storage of neurophysiology data and metadata to facilitate data analysis, sharing, and reuse. The DANDI Archive now has 300+ publicly available datasets in NWB, including from the Allen Institute, International Brain Laboratory, MICRONS project, and over 150 individual labs. In this tutorial, we will introduce several new tools to convert data to NWB, publish data to DANDI, and stream data from DANDI. We will also introduce new community tools for data analysis and management that are integrated with NWB, so this tutorial will be useful for both new and returning attendees. +At this tutorial, we will teach you how to: +- convert neurophysiology data to NWB and publish it on DANDI using the new [NWB GUIDE app](https://nwb-guide.readthedocs.io/en/stable/) and other tools +- read NWB data streamed from DANDI using LINDI for efficient streaming +- process, analyze, and manage NWB data using popular community tools, including tools that have not previously presented as part of this tutorial Bring your laptop to work along with the demonstration. To get familiar with NWB and DANDI prior to attending, please refer to this [documentation](https://nwb-overview.readthedocs.io/en/latest/index.html). ## Registration -There is NO additional fee to attend. When registering for the main meeting, select the "NWB Data Standard and DANDI Archive for Neurophysiology Data Tutorial". +There is NO additional fee to attend. When registering for the main meeting, select the "NWB Data Standard and DANDI Archive for Neurophysiology Tutorial". ## Dates and Location From 7acdf029ba568785b2448aaf6a6d2e4534872707 Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Mon, 11 Nov 2024 16:23:40 -0800 Subject: [PATCH 3/5] Update Cosyne_2025/README.md Co-authored-by: Ben Dichter --- Cosyne_2025/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Cosyne_2025/README.md b/Cosyne_2025/README.md index 649597099..153974078 100644 --- a/Cosyne_2025/README.md +++ b/Cosyne_2025/README.md @@ -10,7 +10,7 @@ The goal of this tutorial is to teach you how to share your neurophysiology data At this tutorial, we will teach you how to: - convert neurophysiology data to NWB and publish it on DANDI using the new [NWB GUIDE app](https://nwb-guide.readthedocs.io/en/stable/) and other tools -- read NWB data streamed from DANDI using LINDI for efficient streaming +- efficiently stream NWB data from DANDI using LINDI - process, analyze, and manage NWB data using popular community tools, including tools that have not previously presented as part of this tutorial Bring your laptop to work along with the demonstration. To get familiar with NWB and DANDI prior to attending, please refer to this [documentation](https://nwb-overview.readthedocs.io/en/latest/index.html). From 82c83fe371a2bc17fa833c7272a68ccf0681f552 Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Mon, 11 Nov 2024 16:23:52 -0800 Subject: [PATCH 4/5] Update Cosyne_2025/README.md Co-authored-by: Ben Dichter --- Cosyne_2025/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Cosyne_2025/README.md b/Cosyne_2025/README.md index 153974078..af56f8de1 100644 --- a/Cosyne_2025/README.md +++ b/Cosyne_2025/README.md @@ -6,7 +6,7 @@ The [Neurodata Without Borders (NWB)](https://www.nwb.org/) team is holding a tutorial on the NWB data standard and [DANDI Archive](https://www.dandiarchive.org/) during the [tutorial session of COSYNE 2025](https://www.cosyne.org/tutorials). -The goal of this tutorial is to teach you how to share your neurophysiology data using the [Neurodata Without Borders (NWB)](https://www.nwb.org/) data standard and the [DANDI Archive](https://www.dandiarchive.org/) and how to use NWB data available on DANDI. NWB standardizes the storage of neurophysiology data and metadata to facilitate data analysis, sharing, and reuse. The DANDI Archive now has 300+ publicly available datasets in NWB, including from the Allen Institute, International Brain Laboratory, MICRONS project, and over 150 individual labs. In this tutorial, we will introduce several new tools to convert data to NWB, publish data to DANDI, and stream data from DANDI. We will also introduce new community tools for data analysis and management that are integrated with NWB, so this tutorial will be useful for both new and returning attendees. +The goal of this tutorial is to teach you how to share your neurophysiology data using the [Neurodata Without Borders (NWB)](https://www.nwb.org/) data standard and the [DANDI Archive](https://www.dandiarchive.org/) and how to use NWB data available on DANDI. NWB standardizes the storage of neurophysiology data and metadata to facilitate data analysis, sharing, and reuse. The DANDI Archive now has 300+ TB of neurophysiology data across 300+ publicly available datasets in NWB, including from the Allen Institute, International Brain Laboratory, MICRONS project, and over 150 individual labs. In this tutorial, we will introduce several new tools to convert data to NWB, publish data to DANDI, and stream data from DANDI. We will also introduce new community tools for data analysis and management that are integrated with NWB, so this tutorial will be useful for both new and returning attendees. At this tutorial, we will teach you how to: - convert neurophysiology data to NWB and publish it on DANDI using the new [NWB GUIDE app](https://nwb-guide.readthedocs.io/en/stable/) and other tools From d30079e6d0b32a8e4953b7e5dc86008fb988dad5 Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Mon, 11 Nov 2024 16:24:49 -0800 Subject: [PATCH 5/5] Update README.md --- Cosyne_2025/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Cosyne_2025/README.md b/Cosyne_2025/README.md index af56f8de1..ba4a19aab 100644 --- a/Cosyne_2025/README.md +++ b/Cosyne_2025/README.md @@ -10,7 +10,7 @@ The goal of this tutorial is to teach you how to share your neurophysiology data At this tutorial, we will teach you how to: - convert neurophysiology data to NWB and publish it on DANDI using the new [NWB GUIDE app](https://nwb-guide.readthedocs.io/en/stable/) and other tools -- efficiently stream NWB data from DANDI using LINDI +- read local NWB data using Python and MATLAB, and efficiently stream remote NWB data on DANDI using the new LINDI tool - process, analyze, and manage NWB data using popular community tools, including tools that have not previously presented as part of this tutorial Bring your laptop to work along with the demonstration. To get familiar with NWB and DANDI prior to attending, please refer to this [documentation](https://nwb-overview.readthedocs.io/en/latest/index.html).