From 4d3b28ea9040548cad61ca2a734fdd76fd738466 Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Wed, 26 Jun 2024 14:32:30 -0700 Subject: [PATCH] Test [do not merge] --- HCK21_2024_Janelia_NDRH/README.md | 124 ------------------------------ 1 file changed, 124 deletions(-) diff --git a/HCK21_2024_Janelia_NDRH/README.md b/HCK21_2024_Janelia_NDRH/README.md index 4b02fa418..588509d7e 100644 --- a/HCK21_2024_Janelia_NDRH/README.md +++ b/HCK21_2024_Janelia_NDRH/README.md @@ -3,128 +3,4 @@ # NeuroDataReHack 2024 ## *Generate new insights from existing neurophysiology data through secondary analysis* -[//]: # (* [Report](#report)) -* [Dates and Location](#dates-and-location) -* [Objective](#objective) -* [Logistics](#logistics) -* [Organizing Committee](#organizing-committee) -* [Resources](#resources) -* [What to bring?](#what-to-bring) -* [Schedule](#schedule) -* [Disclaimer](#disclaimer) -[//]: # (* [Eligibility](#eligibility)) -[//]: # (* [Application](#application)) - - -## Dates and Location - -- **Dates:** July 8-12, 2024 -- **Location:** [HHMI Janelia Research Campus](https://www.janelia.org/), 19700 Helix Dr, Ashburn, VA 20147, - [Openstreetmap](https://www.openstreetmap.org/?mlat=39.0708&mlon=-77.4655#map=14/39.0708/-77.4655) - [Directions](https://www.janelia.org/directions) - -## Objective -[The DANDI Archive](http://dandiarchive.org) now has 199+ neurophysiology datasets in the -[Neurodata Without Borders](http://nwb.org) format spanning many species, brain areas, task types, and imaging -modalities. These include high-value datasets, e.g. from [Allen Institute OpenScope](https://dandiarchive.org/dandiset/search?search=openscope), the [MICrONS project](https://dandiarchive.org/dandiset/000402), and the -[International Brain Laboratory Brain Wide Map](https://dandiarchive.org/dandiset/000409), as well as diverse contributions from neuroscience labs around the world. In this -workshop, we will teach attendees about the open neurophysiology datasets available on the DANDI Archive and train -them on how to maximally utilize the archive and the NWB standard to incorporate existing data into their scientific -workflows. Feedback from attendees will be used to improve the software and data standard to better enable -reanalysis workflows. - - -Prior to the workshop, we are organizing [Open Neurodata Showcase](../HCK20_2024_OpenNeurodataShowcase/README.md) where attendees can meet the contributors behind the neurophysiology datasets and explore virtual posters. Visit the [event page](../HCK20_2024_OpenNeurodataShowcase/README.md#application) to sign up -and read more about this feature event. - - -Example projects include but are not limited to: -* Determine whether your result is present in another species or brain area. -* Showcase the capabilities of your tool or analysis on existing data from another lab. -* Explore follow-up questions to a study. -* Create educational content that uses open data. - - -This event will primarily focus on analyzing existing data in NWB and on DANDI, **not** converting data to NWB. If -you are interested in learning how to convert data, consider signing up for an NWB User Days event. - - - -## Logistics - -Thanks to the generous sponsorship of The Janelia Research Campus, this event will be free to participants: -* There is no registration or application fee. -* Participants will be provided a private room at Janelia Research Campus for the duration of this event, - checking in on Sunday, July 7, and checking out on Friday, July 12 or Saturday, July 13. -* Breakfast, lunch, dinner, and coffee breaks will be provided. -* You will be responsible for booking your own flight and transportation to Janelia Research Campus. -* You will be responsible for determining visa and/or healthcare requirements for travel to the United States. - -## Organizing Committee - -**Program chairs:** -* Benjamin Dichter, CatalystNeuro -* Oliver Rübel, Lawrence Berkeley National Laboratory -* Ryan Ly, Lawrence Berkeley National Laboratory - -## Resources - -Resources will be posted here to help participants prepare for the event. - -* A report of the first NeuroDataReHack event: ([PDF](../HCK14_2022_Seattle_RH/report/Report_Neurodata_Rehack_v2.pdf)) -* A report of the second NeuroDataReHack event: ([PDF](../HCK16_2023_Granada_RH/report/Report__NeuroDataReHack_2023.pdf)) -* Recordings of talks will be made available on the [NWB Youtube channel](https://www.youtube.com/channel/UCfD_mU-EFz135a9TpNFJP5A). - -## What to bring? - -Bring a laptop with appropriate software installed. Python should be installed and MATLAB is optional. For -instructions on how to install PyNWB, see -[the PyNWB documentation](https://pynwb.readthedocs.io/en/stable/install_users.html#installing-pynwb). For instructions -on how to install MatNWB, see -[the MatNWB documentation](https://github.com/NeurodataWithoutBorders/matnwb/blob/master/README.md) - -## Schedule -Tentative schedule: - -Agenda NeuroDataReHack 2023 - -[PDF](AgendaNeuroDataReHack2024.pdf) - -## Disclaimer - -This website and related content were prepared as an account of or to expedite work sponsored at least in part by -the United States Government. While we strive to provide correct information, neither the United States Government -nor any agency thereof, nor The Regents of the University of California, nor any of their employees, makes any -warranty, express or implied, or assumes any legal responsibility for the accuracy, completeness, or usefulness of -any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately -owned rights. - -Reference herein to any specific commercial product, process, or service by its trade name, trademark, manufacturer, -or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United -States Government or any agency thereof, or The Regents of the University of California. 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