From bb50b01470a7386170e19c7bc555f89f5632766a Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Tue, 7 Mar 2023 16:46:31 +0000
Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 .gitignore                                    |    2 +-
 .prettierignore                               |    2 +-
 assets/blackfynn-warning-message.txt          |    1 -
 .../fair-data-innovations-hub-logo.svg        |    2 +-
 docs/test-dataset/code/adjusted-code.py       |    2 +-
 docs/test-dataset/code/some-code.py           |    2 +-
 docs/test-dataset/metadata-files/CHANGES.txt  |    2 +-
 docs/test-dataset/metadata-files/README.txt   |    4 +-
 .../HRW tile 25002-84590.ome.tif              |    2 +-
 entitlements.mac.inherit.plist                |    2 +-
 index.html                                    |    6 +-
 pyflask/apis/apiCollections.py                |   86 +-
 pyflask/apis/apiCurate.py                     |  253 +-
 pyflask/apis/apiDatasets.py                   |  225 +-
 pyflask/apis/apiDisseminate.py                |  278 +-
 pyflask/apis/apiManageDatasets.py             | 2257 +++++++++++------
 pyflask/apis/apiNeuroConv.py                  |    8 +-
 pyflask/apis/apiOrganizeDatasets.py           |  194 +-
 pyflask/apis/apiPrepareMetadata.py            |  965 ++++---
 pyflask/apis/apiStartup.py                    |   11 +-
 pyflask/apis/apiTaxonomy.py                   |    9 +-
 pyflask/apis/apiUser.py                       |   57 +-
 pyflask/apis/apiValidator.py                  |    3 +-
 pyflask/apis/apiVersion.py                    |   22 +-
 pyflask/app.py                                |    7 +-
 pyflask/authentication/__init__.py            |    2 +-
 pyflask/authentication/authenticate.py        |   29 +-
 pyflask/collectionsDataset/__init__.py        |    5 +-
 .../collectionsDataset/collectionsDataset.py  |   11 +-
 pyflask/curate/__init__.py                    |    4 +-
 pyflask/curate/curate.py                      |  286 ++-
 pyflask/datasets/__init__.py                  |    8 +-
 pyflask/datasets/datasets.py                  |   66 +-
 pyflask/disseminate/__init__.py               |    4 +-
 pyflask/disseminate/disseminate.py            |  132 +-
 pyflask/errorHandlers/__init__.py             |    2 +-
 pyflask/errorHandlers/fileNotFound.py         |    2 +-
 pyflask/errorHandlers/handleHTTPError.py      |   13 +-
 pyflask/errorHandlers/handlePennsieveError.py |    9 +-
 .../invalidDataDeliverablesDocument.py        |    2 +-
 pyflask/errorHandlers/invalidFileException.py |    3 +-
 .../errorHandlers/notBadRequestException.py   |    3 +-
 pyflask/manageDatasets/__init__.py            |    6 +-
 pyflask/manageDatasets/manage_datasets.py     |  252 +-
 pyflask/manageNeuroconv/manage_neuroconv.py   |    4 +-
 pyflask/minimumApiVersion/__init__.py         |    3 +-
 pyflask/minimumApiVersion/apiVersion.py       |    3 +-
 pyflask/namespaces/__init__.py                |    2 +-
 pyflask/namespaces/configureNamespaces.py     |   60 +-
 pyflask/namespaces/namespaceLogger.py         |    3 +-
 pyflask/organizeDatasets/__init__.py          |    6 +-
 pyflask/organizeDatasets/organize_datasets.py |   58 +-
 pyflask/prepareMetadata/__init__.py           |    6 +-
 pyflask/prepareMetadata/prepare_metadata.py   |  252 +-
 pyflask/pysodaUtils/__init__.py               |   10 +-
 pyflask/pysodaUtils/pysodaUtils.py            |   13 +-
 pyflask/setupUtils/configureAPI.py            |    6 +-
 pyflask/setupUtils/configureLogger.py         |   11 +-
 pyflask/startup/__init__.py                   |    2 +-
 pyflask/startup/echo.py                       |    2 +-
 pyflask/startup/minimumApiVersion.py          |    5 +-
 pyflask/taxonomy/__init__.py                  |    2 +-
 pyflask/taxonomy/taxonomy.py                  |    2 +-
 pyflask/users/__init__.py                     |    2 +-
 pyflask/users/user.py                         |   60 +-
 pyflask/utils/__init__.py                     |    2 +-
 pyflask/utils/apiAuthentication.py            |    3 +-
 pyflask/utils/getDataset.py                   |    9 +-
 pyflask/utils/metadataStringToList.py         |   11 +-
 pyflask/validator/hooks/hook-frozendict.py    |    2 +-
 pyflask/validator/hooks/hook-idlib.py         |    2 +-
 pyflask/validator/hooks/hook-ontquery.py      |    2 +-
 pyflask/validator/hooks/hook-protc-lib.py     |    2 +-
 pyflask/validator/hooks/hook-protcur.py       |    2 +-
 pyflask/validator/hooks/hook-pyontutils.py    |    2 +-
 pyflask/validator/hooks/hook-pysercomb.py     |    2 +-
 pyflask/validator/hooks/hook-sparcur.py       |    2 +-
 pyflask/validator/validator.py                |   49 +-
 pyflask/validator/validatorUtils/__init__.py  |    2 +-
 .../error_path_report_parser.py               |   15 +-
 scripts/disseminate/disseminate.js            |    2 +-
 scripts/disseminate/prePublishingReview.js    |    4 +-
 scripts/guided-mode/guided-curate-dataset.js  |   48 +-
 scripts/metadata-files/submission.js          |    2 +-
 scripts/organize-dataset/organizeDS.js        |    6 +-
 .../others/analytics/curation-analytics.js    |    2 +-
 .../analytics/upload-session-tracker.js       |    8 +-
 scripts/validator/parse-pipeline-errors.js    |   12 +-
 scripts/validator/parsed-error-translator.js  |    4 +-
 scripts/validator/validation-error-parser.js  |   18 +-
 scripts/validator/validator-categories.js     |    8 +-
 sections/curate/curate.html                   |    4 +-
 sections/post_curation/post_curation.html     |    2 +-
 stories/assets/code-brackets.svg              |    2 +-
 stories/assets/colors.svg                     |    2 +-
 stories/assets/comments.svg                   |    2 +-
 stories/assets/direction.svg                  |    2 +-
 stories/assets/flow.svg                       |    2 +-
 stories/assets/plugin.svg                     |    2 +-
 stories/assets/repo.svg                       |    2 +-
 stories/assets/stackalt.svg                   |    2 +-
 tools/analytics/helper_functions.py           |  166 +-
 .../soda-sparc-structure.py                   |   71 +-
 103 files changed, 3902 insertions(+), 2331 deletions(-)

diff --git a/.gitignore b/.gitignore
index df132a464..0e28eb087 100644
--- a/.gitignore
+++ b/.gitignore
@@ -6,7 +6,7 @@ node_modules
 build/api
 pysodadist
 pyflaskdist
-pyflask/ds 
+pyflask/ds
 dist
 src/Users
 semantic
diff --git a/.prettierignore b/.prettierignore
index 29908d625..7400c2482 100644
--- a/.prettierignore
+++ b/.prettierignore
@@ -1,2 +1,2 @@
 curate.html
-tools/**/*
\ No newline at end of file
+tools/**/*
diff --git a/assets/blackfynn-warning-message.txt b/assets/blackfynn-warning-message.txt
index a66675f5d..261000c13 100644
--- a/assets/blackfynn-warning-message.txt
+++ b/assets/blackfynn-warning-message.txt
@@ -3,4 +3,3 @@
     "warning-message-1": "<p>As you may know Blackfynn will be transitioning to Pennsieve. During this period, any features of SODA that use Blackfynn could be affected.</p>",
     "warning-message": "<p>This version of SODA is ready to work with Pennsieve. You will be required to connect your Pennsieve account with SODA to get started. <a href='https://github.com/bvhpatel/SODA/wiki/Connect-your-Pennsieve-account-with-SODA' target='_blank'>Click here to learn more.</a> <br>As we are still thoroughly testing our integration with Pennsieve, we do expect some bugs. Please let us know if you find any at <a href='mailto:bpatel@calmi2.org'>bpatel@calmi2.org</a>.</p>"
 }
-
diff --git a/assets/logo-svg/fair-data-innovations-hub-logo.svg b/assets/logo-svg/fair-data-innovations-hub-logo.svg
index a2c563071..5c30c6d7d 100644
--- a/assets/logo-svg/fair-data-innovations-hub-logo.svg
+++ b/assets/logo-svg/fair-data-innovations-hub-logo.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 505.18 151"><defs><style>.cls-1,.cls-5{fill:#231f20;}.cls-2,.cls-4{fill:#c52790;}.cls-3{fill:#c5268f;}.cls-4{stroke:#c52790;}.cls-4,.cls-5{stroke-miterlimit:10;stroke-width:0.93px;}.cls-5{stroke:#231f20;}.cls-6{fill:#010101;}</style></defs><g id="Layer_2" data-name="Layer 2"><g id="Layer_1-2" data-name="Layer 1"><g id="Layer_14" data-name="Layer 14"><path class="cls-1" d="M15.2,119.92v-54l-1.36,1.36H48.57A15.94,15.94,0,0,1,57,69.63c7.31,4.52,10.63,13.52,10.66,21.79,0,4.36,0,8.71,0,13.07v17.35c0,1.77,0,3.54-.14,5.3a27.51,27.51,0,0,1-4.62,13,18.79,18.79,0,0,1-9.39,7.35,18.76,18.76,0,0,1-6,.77H15A1.36,1.36,0,0,0,15,151H45.47c1.24,0,2.47,0,3.71,0a19.1,19.1,0,0,0,11.73-4.59c6.54-5.44,9.49-14.2,9.49-22.5V92.64c0-7.48-1.78-14.81-6.64-20.66a20.55,20.55,0,0,0-10.51-6.9,23.72,23.72,0,0,0-6-.57H13.84a1.37,1.37,0,0,0-1.36,1.36v54.05a1.36,1.36,0,0,0,2.71,0Z"/><path class="cls-2" d="M21.11,98.75l0-13.38L21,64.15V59.23l-1.35,1.34h29.3c4.07,0,8.4-.44,12.18,1.36,8.24,3.91,12.15,13.51,12.18,22.19,0,3.83,0,7.66,0,11.5v17.63c0,1.23,0,2.45,0,3.69A30.94,30.94,0,0,1,69.75,131a20.86,20.86,0,0,1-8.62,9,14,14,0,0,1-6.49,1.37H23.06a1.34,1.34,0,0,0,0,2.68H52.84A35.22,35.22,0,0,0,57.2,144,18.07,18.07,0,0,0,68,138.09c5.56-6,7.95-14.25,7.95-22.29V84.89c0-7.75-2.32-15.62-7.91-21.23a18.93,18.93,0,0,0-11-5.63,34.11,34.11,0,0,0-4.29-.13H19.64a1.35,1.35,0,0,0-1.34,1.34l.05,13.37.07,21.22,0,4.93a1.34,1.34,0,0,0,2.68,0Z"/><path class="cls-3" d="M8.85,41.59c.34-16.19,9.73-33.08,26-37.75A33.24,33.24,0,0,1,60.83,7.57,35.28,35.28,0,0,1,71,17.28a50.27,50.27,0,0,1,7,13.21,37.25,37.25,0,0,1,2.11,12V90.37c0,7.68-.13,15.38,0,23.07v.36a1.34,1.34,0,0,0,2.68,0V45.5a50.1,50.1,0,0,0-1.17-12.26,49.39,49.39,0,0,0-6.37-14.49,43.45,43.45,0,0,0-9.53-11A36.43,36.43,0,0,0,38.54.33C21.43,2.73,9.39,18.28,6.8,34.65a52,52,0,0,0-.62,6.94,1.34,1.34,0,0,0,2.68,0Z"/><path class="cls-2" d="M8.84,42.44v-.92a1.34,1.34,0,1,0-2.68,0h0v.92a1.34,1.34,0,0,0,2.68,0Z"/><path class="cls-2" d="M23.06,141.44a12.07,12.07,0,0,1-6.42-1.28,15,15,0,0,1-5.85-6.67,22.45,22.45,0,0,1-1.95-9.83V56.54c0-4.34.15-8.71,0-13V43.3a1.34,1.34,0,0,0-2.68,0v80a27.57,27.57,0,0,0,1.19,8.79c1.94,5.82,6.51,11.42,13,12,.9.08,1.82,0,2.73,0a1.34,1.34,0,0,0,0-2.68Z"/><path class="cls-1" d="M16.86,148.29a13.45,13.45,0,0,1-5.66-.79,13,13,0,0,1-5.64-5.19,21.06,21.06,0,0,1-2.86-11.1V56.37c0-6.23-.19-12.51,1.17-18.63,2.4-10.94,8.81-21.24,18.58-27A31.77,31.77,0,0,1,53,9.65c10,5.13,17,15,19.9,25.68,2.26,8.22,1.71,16.81,1.71,25.24v2.74a1.35,1.35,0,0,0,2.7,0V54a107.45,107.45,0,0,0-.26-10.92c-1.19-11.92-6.59-23.65-16-31.32a35,35,0,0,0-31.55-7c-11.07,3.11-19.93,11.7-24.75,22A50.32,50.32,0,0,0,.15,44.93C-.07,48.43,0,52,0,55.49c0,3.33,0,6.67,0,10v64.59a32.26,32.26,0,0,0,.55,6.79c1.2,5.64,4.65,11.21,10.23,13.35a16.42,16.42,0,0,0,6.07.76,1.35,1.35,0,0,0,0-2.7Z"/><path class="cls-1" d="M12.5,119.85c.08,2.36,1.58,5,4.24,5s4.16-2.59,4.23-5c.06-1.73-2.62-1.72-2.67,0,0,.87-.45,2.3-1.56,2.3s-1.54-1.43-1.56-2.3C15.12,118.13,12.44,118.12,12.5,119.85Z"/><ellipse class="cls-4" cx="19.63" cy="107.35" rx="1.43" ry="1.51"/><ellipse class="cls-5" cx="19.63" cy="115.83" rx="1.43" ry="1.51"/><ellipse class="cls-4" cx="19.63" cy="103.11" rx="1.43" ry="1.51"/><ellipse class="cls-5" cx="19.63" cy="111.59" rx="1.43" ry="1.51"/></g><path class="cls-3" d="M139.39,34.26H123.58v7.3h14.08v5.52H123.58v14h-5.84V28.46h21.65Z"/><path class="cls-3" d="M168.53,61.11h-6.36L159,52.6h-11.5l-3.09,8.51h-6.36l12.53-32.65h5.29ZM157.16,47.45l-3.88-10.52-3.83,10.52Z"/><path class="cls-3" d="M178,61.11h-5.89V28.46H178Z"/><path class="cls-3" d="M200.84,47a7.65,7.65,0,0,1,1.59,2l7.67,12.11h-6.83L196.63,50c-1-1.68-1.54-2.43-3.65-2.43h-2.34V61.11h-5.89V28.46h11.79c6.31,0,11.17,2.95,11.17,9.73A8.91,8.91,0,0,1,200.84,47Zm-4.26-12.86h-5.94V42.4h5.94c2.95,0,5.24-.79,5.24-4.21S199.44,34.12,196.58,34.12Z"/><path class="cls-6" d="M237,61.11h-9.22V28.46H237c12.72,0,15.29,4.21,15.29,16.33S249.71,61.11,237,61.11Zm8.37-24.51c-1.08-1.78-3.18-2.34-7.06-2.34h-4.63V55.31h4.63c3.92,0,6-.61,7.1-2.43.8-1.41,1-3.46,1-8.05S246.2,38,245.36,36.6Z"/><path class="cls-6" d="M283.8,61.11h-6.36l-3.13-8.51H262.8l-3.09,8.51h-6.36l12.54-32.65h5.28ZM272.43,47.45l-3.88-10.52-3.83,10.52Z"/><path class="cls-6" d="M306.2,34.26h-9.4V61.11h-5.89V34.26h-9.4v-5.8H306.2Z"/><path class="cls-6" d="M334.35,61.11H328l-3.13-8.51H313.35l-3.08,8.51h-6.36l12.53-32.65h5.28ZM323,47.45l-3.88-10.52-3.84,10.52Z"/><path class="cls-3" d="M123.77,117.22h-5.89V84.58h5.89Z"/><path class="cls-3" d="M154.22,117.22H149.4l-13-20.43v20.43h-5.89V84.58h4.87l13,20.44V84.58h5.85Z"/><path class="cls-3" d="M184.52,117.22H179.7L166.75,96.79v20.43h-5.9V84.58h4.87L178.67,105V84.58h5.85Z"/><path class="cls-3" d="M203.27,117.6c-9.82,0-13.52-8-13.52-16.7s3.7-16.69,13.52-16.69,13.52,8,13.52,16.69S213.09,117.6,203.27,117.6Zm0-27.59c-6.41,0-7.62,5.8-7.62,10.89s1.21,10.9,7.62,10.9,7.58-5.8,7.58-10.9S209.72,90,203.27,90Z"/><path class="cls-3" d="M246,84.58l-11,32.64h-5.61l-11-32.64h6.17l7.62,23.76,7.67-23.76Z"/><path class="cls-3" d="M273.74,117.22h-6.35l-3.14-8.51h-11.5l-3.09,8.51H243.3l12.53-32.64h5.29Zm-11.36-13.65L258.5,93.05l-3.84,10.52Z"/><path class="cls-3" d="M296.15,90.38h-9.41v26.84h-5.89V90.38h-9.4v-5.8h24.7Z"/><path class="cls-3" d="M306.85,117.22H301V84.58h5.89Z"/><path class="cls-3" d="M325.75,117.6c-9.83,0-13.52-8-13.52-16.7s3.69-16.69,13.52-16.69,13.51,8,13.51,16.69S335.57,117.6,325.75,117.6Zm0-27.59c-6.41,0-7.63,5.8-7.63,10.89s1.22,10.9,7.63,10.9,7.57-5.8,7.57-10.9S332.2,90,325.75,90Z"/><path class="cls-3" d="M368.16,117.22h-4.82L350.39,96.79v20.43H344.5V84.58h4.86l13,20.44V84.58h5.84Z"/><path class="cls-3" d="M386.4,117.69c-6.88,0-11.46-3.08-13.1-9.63l5.57-1.08c1,3.65,3.83,5.1,7.53,5.1,2.76,0,6.17-1.4,6.17-4.68,0-6.73-18.19-2.29-18.19-14,0-6.17,5.56-9.16,11.08-9.16,5.8,0,9.5,2.15,12,7.25l-5.1,2.33c-1.54-2.9-3.5-4.11-6.92-4.11-2.1,0-5.19.93-5.19,3.69,0,5.71,18.19,2,18.19,14C398.46,114,392.48,117.69,386.4,117.69Z"/><path class="cls-6" d="M442.09,117.22H436.2v-14H423.25v14h-5.9V84.58h5.9v13.1H436.2V84.58h5.89Z"/><path class="cls-6" d="M473,103.66c0,8.37-3.42,13.94-12.35,13.94s-12.35-5.61-12.35-13.94V84.58h5.85v18.8c0,4.54,1,8.51,6.5,8.51s6.5-3.83,6.5-8.51V84.58H473Z"/><path class="cls-6" d="M491.76,117.22H479.18V84.58H491c6.22,0,11.18,2.62,11.18,9.45a7.74,7.74,0,0,1-2.81,6.08,8.19,8.19,0,0,1,4,7.34C503.31,114.61,498.26,117.22,491.76,117.22Zm-.7-27.07h-6V98.1h6c2.85,0,5.29-.61,5.29-4S493.86,90.15,491.06,90.15Zm.7,13.14h-6.69v8.37h6.69c3,0,5.65-.52,5.65-4.16S494.75,103.29,491.76,103.29Z"/></g></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 505.18 151"><defs><style>.cls-1,.cls-5{fill:#231f20;}.cls-2,.cls-4{fill:#c52790;}.cls-3{fill:#c5268f;}.cls-4{stroke:#c52790;}.cls-4,.cls-5{stroke-miterlimit:10;stroke-width:0.93px;}.cls-5{stroke:#231f20;}.cls-6{fill:#010101;}</style></defs><g id="Layer_2" data-name="Layer 2"><g id="Layer_1-2" data-name="Layer 1"><g id="Layer_14" data-name="Layer 14"><path class="cls-1" d="M15.2,119.92v-54l-1.36,1.36H48.57A15.94,15.94,0,0,1,57,69.63c7.31,4.52,10.63,13.52,10.66,21.79,0,4.36,0,8.71,0,13.07v17.35c0,1.77,0,3.54-.14,5.3a27.51,27.51,0,0,1-4.62,13,18.79,18.79,0,0,1-9.39,7.35,18.76,18.76,0,0,1-6,.77H15A1.36,1.36,0,0,0,15,151H45.47c1.24,0,2.47,0,3.71,0a19.1,19.1,0,0,0,11.73-4.59c6.54-5.44,9.49-14.2,9.49-22.5V92.64c0-7.48-1.78-14.81-6.64-20.66a20.55,20.55,0,0,0-10.51-6.9,23.72,23.72,0,0,0-6-.57H13.84a1.37,1.37,0,0,0-1.36,1.36v54.05a1.36,1.36,0,0,0,2.71,0Z"/><path class="cls-2" d="M21.11,98.75l0-13.38L21,64.15V59.23l-1.35,1.34h29.3c4.07,0,8.4-.44,12.18,1.36,8.24,3.91,12.15,13.51,12.18,22.19,0,3.83,0,7.66,0,11.5v17.63c0,1.23,0,2.45,0,3.69A30.94,30.94,0,0,1,69.75,131a20.86,20.86,0,0,1-8.62,9,14,14,0,0,1-6.49,1.37H23.06a1.34,1.34,0,0,0,0,2.68H52.84A35.22,35.22,0,0,0,57.2,144,18.07,18.07,0,0,0,68,138.09c5.56-6,7.95-14.25,7.95-22.29V84.89c0-7.75-2.32-15.62-7.91-21.23a18.93,18.93,0,0,0-11-5.63,34.11,34.11,0,0,0-4.29-.13H19.64a1.35,1.35,0,0,0-1.34,1.34l.05,13.37.07,21.22,0,4.93a1.34,1.34,0,0,0,2.68,0Z"/><path class="cls-3" d="M8.85,41.59c.34-16.19,9.73-33.08,26-37.75A33.24,33.24,0,0,1,60.83,7.57,35.28,35.28,0,0,1,71,17.28a50.27,50.27,0,0,1,7,13.21,37.25,37.25,0,0,1,2.11,12V90.37c0,7.68-.13,15.38,0,23.07v.36a1.34,1.34,0,0,0,2.68,0V45.5a50.1,50.1,0,0,0-1.17-12.26,49.39,49.39,0,0,0-6.37-14.49,43.45,43.45,0,0,0-9.53-11A36.43,36.43,0,0,0,38.54.33C21.43,2.73,9.39,18.28,6.8,34.65a52,52,0,0,0-.62,6.94,1.34,1.34,0,0,0,2.68,0Z"/><path class="cls-2" d="M8.84,42.44v-.92a1.34,1.34,0,1,0-2.68,0h0v.92a1.34,1.34,0,0,0,2.68,0Z"/><path class="cls-2" d="M23.06,141.44a12.07,12.07,0,0,1-6.42-1.28,15,15,0,0,1-5.85-6.67,22.45,22.45,0,0,1-1.95-9.83V56.54c0-4.34.15-8.71,0-13V43.3a1.34,1.34,0,0,0-2.68,0v80a27.57,27.57,0,0,0,1.19,8.79c1.94,5.82,6.51,11.42,13,12,.9.08,1.82,0,2.73,0a1.34,1.34,0,0,0,0-2.68Z"/><path class="cls-1" d="M16.86,148.29a13.45,13.45,0,0,1-5.66-.79,13,13,0,0,1-5.64-5.19,21.06,21.06,0,0,1-2.86-11.1V56.37c0-6.23-.19-12.51,1.17-18.63,2.4-10.94,8.81-21.24,18.58-27A31.77,31.77,0,0,1,53,9.65c10,5.13,17,15,19.9,25.68,2.26,8.22,1.71,16.81,1.71,25.24v2.74a1.35,1.35,0,0,0,2.7,0V54a107.45,107.45,0,0,0-.26-10.92c-1.19-11.92-6.59-23.65-16-31.32a35,35,0,0,0-31.55-7c-11.07,3.11-19.93,11.7-24.75,22A50.32,50.32,0,0,0,.15,44.93C-.07,48.43,0,52,0,55.49c0,3.33,0,6.67,0,10v64.59a32.26,32.26,0,0,0,.55,6.79c1.2,5.64,4.65,11.21,10.23,13.35a16.42,16.42,0,0,0,6.07.76,1.35,1.35,0,0,0,0-2.7Z"/><path class="cls-1" d="M12.5,119.85c.08,2.36,1.58,5,4.24,5s4.16-2.59,4.23-5c.06-1.73-2.62-1.72-2.67,0,0,.87-.45,2.3-1.56,2.3s-1.54-1.43-1.56-2.3C15.12,118.13,12.44,118.12,12.5,119.85Z"/><ellipse class="cls-4" cx="19.63" cy="107.35" rx="1.43" ry="1.51"/><ellipse class="cls-5" cx="19.63" cy="115.83" rx="1.43" ry="1.51"/><ellipse class="cls-4" cx="19.63" cy="103.11" rx="1.43" ry="1.51"/><ellipse class="cls-5" cx="19.63" cy="111.59" rx="1.43" ry="1.51"/></g><path class="cls-3" d="M139.39,34.26H123.58v7.3h14.08v5.52H123.58v14h-5.84V28.46h21.65Z"/><path class="cls-3" d="M168.53,61.11h-6.36L159,52.6h-11.5l-3.09,8.51h-6.36l12.53-32.65h5.29ZM157.16,47.45l-3.88-10.52-3.83,10.52Z"/><path class="cls-3" d="M178,61.11h-5.89V28.46H178Z"/><path class="cls-3" d="M200.84,47a7.65,7.65,0,0,1,1.59,2l7.67,12.11h-6.83L196.63,50c-1-1.68-1.54-2.43-3.65-2.43h-2.34V61.11h-5.89V28.46h11.79c6.31,0,11.17,2.95,11.17,9.73A8.91,8.91,0,0,1,200.84,47Zm-4.26-12.86h-5.94V42.4h5.94c2.95,0,5.24-.79,5.24-4.21S199.44,34.12,196.58,34.12Z"/><path class="cls-6" d="M237,61.11h-9.22V28.46H237c12.72,0,15.29,4.21,15.29,16.33S249.71,61.11,237,61.11Zm8.37-24.51c-1.08-1.78-3.18-2.34-7.06-2.34h-4.63V55.31h4.63c3.92,0,6-.61,7.1-2.43.8-1.41,1-3.46,1-8.05S246.2,38,245.36,36.6Z"/><path class="cls-6" d="M283.8,61.11h-6.36l-3.13-8.51H262.8l-3.09,8.51h-6.36l12.54-32.65h5.28ZM272.43,47.45l-3.88-10.52-3.83,10.52Z"/><path class="cls-6" d="M306.2,34.26h-9.4V61.11h-5.89V34.26h-9.4v-5.8H306.2Z"/><path class="cls-6" d="M334.35,61.11H328l-3.13-8.51H313.35l-3.08,8.51h-6.36l12.53-32.65h5.28ZM323,47.45l-3.88-10.52-3.84,10.52Z"/><path class="cls-3" d="M123.77,117.22h-5.89V84.58h5.89Z"/><path class="cls-3" d="M154.22,117.22H149.4l-13-20.43v20.43h-5.89V84.58h4.87l13,20.44V84.58h5.85Z"/><path class="cls-3" d="M184.52,117.22H179.7L166.75,96.79v20.43h-5.9V84.58h4.87L178.67,105V84.58h5.85Z"/><path class="cls-3" d="M203.27,117.6c-9.82,0-13.52-8-13.52-16.7s3.7-16.69,13.52-16.69,13.52,8,13.52,16.69S213.09,117.6,203.27,117.6Zm0-27.59c-6.41,0-7.62,5.8-7.62,10.89s1.21,10.9,7.62,10.9,7.58-5.8,7.58-10.9S209.72,90,203.27,90Z"/><path class="cls-3" d="M246,84.58l-11,32.64h-5.61l-11-32.64h6.17l7.62,23.76,7.67-23.76Z"/><path class="cls-3" d="M273.74,117.22h-6.35l-3.14-8.51h-11.5l-3.09,8.51H243.3l12.53-32.64h5.29Zm-11.36-13.65L258.5,93.05l-3.84,10.52Z"/><path class="cls-3" d="M296.15,90.38h-9.41v26.84h-5.89V90.38h-9.4v-5.8h24.7Z"/><path class="cls-3" d="M306.85,117.22H301V84.58h5.89Z"/><path class="cls-3" d="M325.75,117.6c-9.83,0-13.52-8-13.52-16.7s3.69-16.69,13.52-16.69,13.51,8,13.51,16.69S335.57,117.6,325.75,117.6Zm0-27.59c-6.41,0-7.63,5.8-7.63,10.89s1.22,10.9,7.63,10.9,7.57-5.8,7.57-10.9S332.2,90,325.75,90Z"/><path class="cls-3" d="M368.16,117.22h-4.82L350.39,96.79v20.43H344.5V84.58h4.86l13,20.44V84.58h5.84Z"/><path class="cls-3" d="M386.4,117.69c-6.88,0-11.46-3.08-13.1-9.63l5.57-1.08c1,3.65,3.83,5.1,7.53,5.1,2.76,0,6.17-1.4,6.17-4.68,0-6.73-18.19-2.29-18.19-14,0-6.17,5.56-9.16,11.08-9.16,5.8,0,9.5,2.15,12,7.25l-5.1,2.33c-1.54-2.9-3.5-4.11-6.92-4.11-2.1,0-5.19.93-5.19,3.69,0,5.71,18.19,2,18.19,14C398.46,114,392.48,117.69,386.4,117.69Z"/><path class="cls-6" d="M442.09,117.22H436.2v-14H423.25v14h-5.9V84.58h5.9v13.1H436.2V84.58h5.89Z"/><path class="cls-6" d="M473,103.66c0,8.37-3.42,13.94-12.35,13.94s-12.35-5.61-12.35-13.94V84.58h5.85v18.8c0,4.54,1,8.51,6.5,8.51s6.5-3.83,6.5-8.51V84.58H473Z"/><path class="cls-6" d="M491.76,117.22H479.18V84.58H491c6.22,0,11.18,2.62,11.18,9.45a7.74,7.74,0,0,1-2.81,6.08,8.19,8.19,0,0,1,4,7.34C503.31,114.61,498.26,117.22,491.76,117.22Zm-.7-27.07h-6V98.1h6c2.85,0,5.29-.61,5.29-4S493.86,90.15,491.06,90.15Zm.7,13.14h-6.69v8.37h6.69c3,0,5.65-.52,5.65-4.16S494.75,103.29,491.76,103.29Z"/></g></g></svg>
diff --git a/docs/test-dataset/code/adjusted-code.py b/docs/test-dataset/code/adjusted-code.py
index d23450ef4..7d80ac164 100644
--- a/docs/test-dataset/code/adjusted-code.py
+++ b/docs/test-dataset/code/adjusted-code.py
@@ -37,7 +37,7 @@
 from validator_soda import pathToJsonStruct, validate_high_level_folder_structure, validate_high_level_metadata_files, \
 validate_sub_level_organization, validate_submission_file, validate_dataset_description_file
 
-from pysoda import ( 
+from pysoda import (
     # clear_queue,
     agent_running, check_forbidden_characters, check_forbidden_characters_bf, bf_dataset_size
 )
diff --git a/docs/test-dataset/code/some-code.py b/docs/test-dataset/code/some-code.py
index f72a3a7ba..0154cd229 100644
--- a/docs/test-dataset/code/some-code.py
+++ b/docs/test-dataset/code/some-code.py
@@ -1 +1 @@
-print('Hello! This is an example python file.')
\ No newline at end of file
+print('Hello! This is an example python file.')
diff --git a/docs/test-dataset/metadata-files/CHANGES.txt b/docs/test-dataset/metadata-files/CHANGES.txt
index 1e3be56d1..592bbd662 100644
--- a/docs/test-dataset/metadata-files/CHANGES.txt
+++ b/docs/test-dataset/metadata-files/CHANGES.txt
@@ -6,4 +6,4 @@ Changes in submssion in August, 2020
 3. Materials and Methods are stated in one Word document loaded in 'protocol" folder
 4. New original confocal microscopic images added in the "primary" folder
 5. New digital traces added in "derivatives" folder
-6. Every microscopic and digital tracing image is accompanied by a png file with the same name for preview
\ No newline at end of file
+6. Every microscopic and digital tracing image is accompanied by a png file with the same name for preview
diff --git a/docs/test-dataset/metadata-files/README.txt b/docs/test-dataset/metadata-files/README.txt
index 6d821766e..c3d4bca6b 100644
--- a/docs/test-dataset/metadata-files/README.txt
+++ b/docs/test-dataset/metadata-files/README.txt
@@ -1,5 +1,5 @@
 The dataset contains morphological data only.
-Two kinds of images: confocal microscopic and 3D digital neuronal tracing 
+Two kinds of images: confocal microscopic and 3D digital neuronal tracing
 The forms with information about mice, samples and microscopy are in the "source" folder
 Origianl microscopic images without any modification or anotation are in the "primary".
-The digital traces are in "derivatives".
\ No newline at end of file
+The digital traces are in "derivatives".
diff --git a/docs/test-dataset/source/experiment images/HRW tile 25002-84590.ome.tif b/docs/test-dataset/source/experiment images/HRW tile 25002-84590.ome.tif
index f3a34851d..8e27be7d6 100644
--- a/docs/test-dataset/source/experiment images/HRW tile 25002-84590.ome.tif	
+++ b/docs/test-dataset/source/experiment images/HRW tile 25002-84590.ome.tif	
@@ -1 +1 @@
-text
\ No newline at end of file
+text
diff --git a/entitlements.mac.inherit.plist b/entitlements.mac.inherit.plist
index ad77a2a1e..6bc22e913 100644
--- a/entitlements.mac.inherit.plist
+++ b/entitlements.mac.inherit.plist
@@ -11,4 +11,4 @@
     <key>com.apple.security.cs.disable-library-validation</key>
     <true/>
   </dict>
-</plist>
\ No newline at end of file
+</plist>
diff --git a/index.html b/index.html
index ab7b34f50..71434cfbe 100755
--- a/index.html
+++ b/index.html
@@ -222,7 +222,7 @@
             ></ul>
           </div>
         </div>
-        
+
         <!-- Sidebar Footer -->
         <div class="boxhead">
           <div style="display: block" id="catalystneuro-logo">
@@ -232,7 +232,7 @@
                 text-align: center;
               "
             >
-              <a 
+              <a
                 href="https://catalystneuro.com/"
                 style="border-bottom:0px;text-decoration:none;"
               >
@@ -304,4 +304,4 @@ <h1 class="guided--text-sub-step mb-0 mt-0">Guided Mode</h1>
 
     <script src="./assets/lotties.js" type="text/javascript"></script>
   </body>
-</html>
\ No newline at end of file
+</html>
diff --git a/pyflask/apis/apiCollections.py b/pyflask/apis/apiCollections.py
index 4b710dceb..c36da4eb4 100644
--- a/pyflask/apis/apiCollections.py
+++ b/pyflask/apis/apiCollections.py
@@ -1,36 +1,43 @@
 from flask_restx import Resource, reqparse, fields
 from namespaces import get_namespace, NamespaceEnum
-from collectionsDataset import (
-    get_all_collections,
-    upload_new_names
-)
+from collectionsDataset import get_all_collections, upload_new_names
 
 from errorHandlers import notBadRequestException
 
 api = get_namespace(NamespaceEnum.COLLECTIONS)
 
 
-organizationCollections = api.model('collectionDataset', {
-    'id': fields.String(required=True, descripion="The id of collection"),
-    'name': fields.String(required=True, description="Collection name")
-})
+organizationCollections = api.model(
+    "collectionDataset",
+    {
+        "id": fields.String(required=True, descripion="The id of collection"),
+        "name": fields.String(required=True, description="Collection name"),
+    },
+)
+
 
 @api.route("/")
 class organizationCollections(Resource):
     collections_parser = reqparse.RequestParser(bundle_errors=True)
-    collections_parser.add_argument('selected_account', type=str, required=True, help="The target account to work with.", location="args")
+    collections_parser.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        help="The target account to work with.",
+        location="args",
+    )
 
-    #the response object
+    # the response object
     @api.marshal_with(organizationCollections, False, 200)
-    #response types/codes
-    @api.doc(responses={500: 'There was an internal error', 400: 'Bad request'})
-    #the request parameters
+    # response types/codes
+    @api.doc(responses={500: "There was an internal error", 400: "Bad request"})
+    # the request parameters
     @api.expect(collections_parser)
-    #get the self, account from the request object
+    # get the self, account from the request object
     def get(self):
-        account = self.collections_parser.parse_args().get('selected_account')
+        account = self.collections_parser.parse_args().get("selected_account")
 
-        try: 
+        try:
             return get_all_collections(account)
         except Exception as e:
             if notBadRequestException(e):
@@ -38,23 +45,48 @@ def get(self):
             raise e
 
     parser_new_names = reqparse.RequestParser(bundle_errors=True)
-    parser_new_names.add_argument('selected_account', type=str, required=True, help="The target account to work with.", location="args")
-    parser_new_names.add_argument('selected_dataset', type=str, required=True, help="The target dataset to work with.", location="args")
-    parser_new_names.add_argument('collection', type=list, required=True, help='List of the collection tag ids', location="json")
+    parser_new_names.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        help="The target account to work with.",
+        location="args",
+    )
+    parser_new_names.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        help="The target dataset to work with.",
+        location="args",
+    )
+    parser_new_names.add_argument(
+        "collection",
+        type=list,
+        required=True,
+        help="List of the collection tag ids",
+        location="json",
+    )
 
     # @api.marshal_with(model_new_collection_names, False, 200)
-    @api.doc(description="Method for creating new collection names on Pennsieve", responses={200: 'Success', 403: 'User is not owner or manager to dataset', 500: 'There was an internal server error', 400: 'Bad request'})
+    @api.doc(
+        description="Method for creating new collection names on Pennsieve",
+        responses={
+            200: "Success",
+            403: "User is not owner or manager to dataset",
+            500: "There was an internal server error",
+            400: "Bad request",
+        },
+    )
     @api.expect(parser_new_names)
-
     def post(self):
         data = self.parser_new_names.parse_args()
-        account = data.get('selected_account')
-        dataset_name = data.get('selected_dataset')
-        collection_names = data.get('collection')
+        account = data.get("selected_account")
+        dataset_name = data.get("selected_dataset")
+        collection_names = data.get("collection")
 
         try:
             return upload_new_names(account, dataset_name, collection_names)
         except Exception as e:
-                if notBadRequestException(e):
-                    api.abort(500, str(e))
-                raise e
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
diff --git a/pyflask/apis/apiCurate.py b/pyflask/apis/apiCurate.py
index 1987c41b9..126d2149b 100644
--- a/pyflask/apis/apiCurate.py
+++ b/pyflask/apis/apiCurate.py
@@ -18,16 +18,26 @@
 
 api = get_namespace(NamespaceEnum.CURATE_DATASETS)
 
-model_check_empty_files_folders_response = api.model( "CheckEmptyFilesFoldersResponse", {
-    "empty_files": fields.List(fields.String),
-    "empty_folders": fields.List(fields.String),
-    "soda_json_structure": fields.String(description="JSON structure of the SODA dataset"),
-})
+model_check_empty_files_folders_response = api.model(
+    "CheckEmptyFilesFoldersResponse",
+    {
+        "empty_files": fields.List(fields.String),
+        "empty_folders": fields.List(fields.String),
+        "soda_json_structure": fields.String(
+            description="JSON structure of the SODA dataset"
+        ),
+    },
+)
+
 
 @api.route("/empty_files_and_folders")
 class CheckEmptyFilesFolders(Resource):
     # response types/codes
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request'}, description="Given a sodajsonobject return a list of empty files and folders should they exist, as well as the sodajsonobject.", params={'soda_json_structure': 'JSON structure of the SODA dataset'})
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad Request"},
+        description="Given a sodajsonobject return a list of empty files and folders should they exist, as well as the sodajsonobject.",
+        params={"soda_json_structure": "JSON structure of the SODA dataset"},
+    )
     def post(self):
         data = request.get_json()
 
@@ -43,20 +53,32 @@ def post(self):
             api.abort(500, str(e))
 
 
+model_main_curation_function_response = api.model(
+    "MainCurationFunctionResponse",
+    {
+        "main_curate_progress_message": fields.String(
+            description="Progress message from the main curation function"
+        ),
+        "main_total_generate_dataset_size": fields.String(
+            description="Total size of the dataset"
+        ),
+        "main_curation_uploaded_files": fields.Integer(
+            description="Number of files that are being generated. "
+        ),
+    },
+)
 
 
-
-model_main_curation_function_response = api.model( "MainCurationFunctionResponse", {
-    "main_curate_progress_message": fields.String(description="Progress message from the main curation function"),
-    "main_total_generate_dataset_size": fields.String(description="Total size of the dataset"),
-    "main_curation_uploaded_files": fields.Integer(description="Number of files that are being generated. ")
-})
-
 @api.route("/curation")
 class Curation(Resource):
-
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request', 403: 'Forbidden'}, 
-    description="Given a sodajsonobject generate a dataset. Used in the final step of Organize Datasets.")   
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad Request",
+            403: "Forbidden",
+        },
+        description="Given a sodajsonobject generate a dataset. Used in the final step of Organize Datasets.",
+    )
     @api.marshal_with(model_main_curation_function_response)
     def post(self):
         data = request.get_json()
@@ -66,7 +88,7 @@ def post(self):
 
         soda_json_structure = data["soda_json_structure"]
 
-        api.logger.info('/curation POST request')
+        api.logger.info("/curation POST request")
 
         try:
             return main_curate_function(soda_json_structure)
@@ -76,24 +98,38 @@ def post(self):
             raise e
 
 
+model_curation_progress_response = api.model(
+    "CurationProgressResponse",
+    {
+        "main_curate_status": fields.String(
+            description="Status of the main curation function"
+        ),
+        "start_generate": fields.Integer(
+            description="True if the main curation function is running"
+        ),
+        "main_curate_progress_message": fields.String(
+            description="Progress message from the main curation function"
+        ),
+        "main_total_generate_dataset_size": fields.Integer(
+            description="Total size of the dataset"
+        ),
+        "main_generated_dataset_size": fields.Integer(
+            description="Size of the dataset that has been generated thus far"
+        ),
+        "elapsed_time_formatted": fields.String(
+            description="Elapsed time of the main curation function"
+        ),
+    },
+)
 
 
-
-
-model_curation_progress_response = api.model( "CurationProgressResponse", {
-    "main_curate_status": fields.String(description="Status of the main curation function"),
-    "start_generate": fields.Integer(description="True if the main curation function is running"),
-    "main_curate_progress_message": fields.String(description="Progress message from the main curation function"),
-    "main_total_generate_dataset_size": fields.Integer(description="Total size of the dataset"),
-    "main_generated_dataset_size": fields.Integer(description="Size of the dataset that has been generated thus far"),
-    "elapsed_time_formatted": fields.String(description="Elapsed time of the main curation function"),
-})
-
 @api.route("/curation/progress")
 class CurationProgress(Resource):
-
     @api.marshal_with(model_curation_progress_response, False, 200)
-    @api.doc(responses={500: 'There was an internal server error'}, description="Return important details to the client about the state of the currently running curation function.")
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Return important details to the client about the state of the currently running curation function.",
+    )
     def get(self):
         try:
             return main_curate_function_progress()
@@ -101,45 +137,56 @@ def get(self):
             api.abort(500, str(e))
 
 
+model_curation_file_details_response = api.model(
+    "CurationFileDetailsResponse",
+    {
+        "main_curation_uploaded_files": fields.Integer(
+            description="Number of files that have been uploaded thus far. "
+        ),
+        "current_size_of_uploaded_files": fields.Integer(
+            description="Size of the files that have been uploaded thus far. "
+        ),
+        "uploaded_folder_counter": fields.Integer(
+            description="Number of folders that have been uploaded thus far. "
+        ),
+        "generated_dataset_id": fields.String(
+            description="ID of the dataset that has been generated. "
+        ),
+    },
+)
 
 
-
-
-
-
-model_curation_file_details_response = api.model( "CurationFileDetailsResponse", {
-    "main_curation_uploaded_files": fields.Integer(description="Number of files that have been uploaded thus far. "),
-    "current_size_of_uploaded_files": fields.Integer(description="Size of the files that have been uploaded thus far. "),
-    "uploaded_folder_counter": fields.Integer(description="Number of folders that have been uploaded thus far. "),
-    "generated_dataset_id": fields.String(description="ID of the dataset that has been generated. ")
-})
-
 @api.route("/curation/upload_details")
 class CurationFileDetails(Resource):
-    
-        @api.marshal_with(model_curation_file_details_response, False, 200)
-        @api.doc(responses={500: 'There was an internal server error'}, description="Function frequently called by front end to help keep track of the amount of files that have been successfully uploaded to Pennsieve, and the size of the uploaded files. Also tells us how many files have been copied (double usage of both variables) to a destination folder for local dataset generation.")
-        def get(self):
-            try:
-                return main_curate_function_upload_details()
-            except Exception as e:
-                api.abort(500, str(e))
-
-
-
-
-
+    @api.marshal_with(model_curation_file_details_response, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Function frequently called by front end to help keep track of the amount of files that have been successfully uploaded to Pennsieve, and the size of the uploaded files. Also tells us how many files have been copied (double usage of both variables) to a destination folder for local dataset generation.",
+    )
+    def get(self):
+        try:
+            return main_curate_function_upload_details()
+        except Exception as e:
+            api.abort(500, str(e))
 
 
 @api.route("/manifest_files/local")
 class GenerateManifestFiles(Resource):
     parser = reqparse.RequestParser()
-    parser.add_argument("filepath", type=str, required=True, help="Path to either a local dataset or a SODA directory for storing temporary manifest files. The latter is used for editing manifest files for local datasets. The former for editing manifest files of manifest information pulled from Pennsieve.", location="json")
-    
-
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request'}, description="Generate manifest files in a local temporary directory or in the user's dataset directory. Allows users to edit their manifest files in the standalone manifest file generator feature.")
+    parser.add_argument(
+        "filepath",
+        type=str,
+        required=True,
+        help="Path to either a local dataset or a SODA directory for storing temporary manifest files. The latter is used for editing manifest files for local datasets. The former for editing manifest files of manifest information pulled from Pennsieve.",
+        location="json",
+    )
+
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad Request"},
+        description="Generate manifest files in a local temporary directory or in the user's dataset directory. Allows users to edit their manifest files in the standalone manifest file generator feature.",
+    )
     @api.expect(parser)
-    def post(self):   # sourcery skip: use-named-expression
+    def post(self):  # sourcery skip: use-named-expression
 
         # get the filepath from the request object
         data = self.parser.parse_args()
@@ -147,27 +194,45 @@ def post(self):   # sourcery skip: use-named-expression
         filepath = data.get("filepath")
 
         try:
-            return create_high_level_manifest_files_existing_local_starting_point(filepath)
+            return create_high_level_manifest_files_existing_local_starting_point(
+                filepath
+            )
         except Exception as e:
             api.abort(500, str(e))
 
 
+model_generate_manifest_locally_response = api.model(
+    "GenerateManifestLocallyResponse",
+    {
+        "success_message_or_manifest_destinationa": fields.String(
+            description="Success message or path to the manifest file"
+        ),
+    },
+)
 
 
-
-
-
-model_generate_manifest_locally_response = api.model( "GenerateManifestLocallyResponse", {
-    "success_message_or_manifest_destinationa": fields.String(description="Success message or path to the manifest file"),
-})
-
-@api.route('/manifest_files')
+@api.route("/manifest_files")
 class GenerateManifestLocally(Resource):
     parser = reqparse.RequestParser()
-    parser.add_argument('generate_purpose', type=str, required=True, help='Can be edit-manifest or otherwise. Use edit-manifest when a user wants to edit their manifest files in the standalone manifest file generation feature.', location='json')
-    parser.add_argument('soda_json_object', type=dict, required=True, help='SODA dataset structure', location='json')
-
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request'}, description="Generate manifest files locally. Used in the standalone manifest file generation feature. Can take edit-manifest keyword that stores the manifest file in a separate directory. Allows ease of editing manifest information for the client.")
+    parser.add_argument(
+        "generate_purpose",
+        type=str,
+        required=True,
+        help="Can be edit-manifest or otherwise. Use edit-manifest when a user wants to edit their manifest files in the standalone manifest file generation feature.",
+        location="json",
+    )
+    parser.add_argument(
+        "soda_json_object",
+        type=dict,
+        required=True,
+        help="SODA dataset structure",
+        location="json",
+    )
+
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad Request"},
+        description="Generate manifest files locally. Used in the standalone manifest file generation feature. Can take edit-manifest keyword that stores the manifest file in a separate directory. Allows ease of editing manifest information for the client.",
+    )
     @api.marshal_with(model_generate_manifest_locally_response, False, 200)
     @api.expect(parser)
     def post(self):
@@ -183,17 +248,21 @@ def post(self):
             api.abort(500, str(e))
 
 
-
-
-
-
-
-
-@api.route('/guided_generate_high_level_folder_manifest_data')
+@api.route("/guided_generate_high_level_folder_manifest_data")
 class GenerateManifestData(Resource):
     parser = reqparse.RequestParser()
-    parser.add_argument('dataset_structure_obj', type=dict, required=True, help='dataset structure used to generate manifest files for each high level folder', location='json')
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request'}, description="Generate Manifest Data for each of the high level folders. Returns an array of arrays to be inserted into jspreadsheet.")
+    parser.add_argument(
+        "dataset_structure_obj",
+        type=dict,
+        required=True,
+        help="dataset structure used to generate manifest files for each high level folder",
+        location="json",
+    )
+
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad Request"},
+        description="Generate Manifest Data for each of the high level folders. Returns an array of arrays to be inserted into jspreadsheet.",
+    )
     @api.expect(parser)
     def post(self):
 
@@ -205,17 +274,21 @@ def post(self):
             api.abort(500, str(e))
 
 
-            
-model_dataset_size_response = api.model( "DatasetSizeResponse", {
-    "dataset_size": fields.Integer(description="Size of the dataset"),
-})
+model_dataset_size_response = api.model(
+    "DatasetSizeResponse",
+    {
+        "dataset_size": fields.Integer(description="Size of the dataset"),
+    },
+)
 
-@api.route('/dataset_size')
-class DatasetSize(Resource):
 
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request'}, 
-    description="Estimate the size of a dataset that will be generated on a user's device.", 
-    params={'soda_json_structure': "SODA dataset structure"})
+@api.route("/dataset_size")
+class DatasetSize(Resource):
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad Request"},
+        description="Estimate the size of a dataset that will be generated on a user's device.",
+        params={"soda_json_structure": "SODA dataset structure"},
+    )
     @api.marshal_with(model_dataset_size_response, False, 200)
     def post(self):
 
diff --git a/pyflask/apis/apiDatasets.py b/pyflask/apis/apiDatasets.py
index c3c379f86..40abd6d45 100644
--- a/pyflask/apis/apiDatasets.py
+++ b/pyflask/apis/apiDatasets.py
@@ -1,77 +1,98 @@
 from flask_restx import Resource, reqparse, fields
 from namespaces import get_namespace, NamespaceEnum
 from errorHandlers import notBadRequestException, handle_http_error
-from datasets import get_role, get_dataset_by_id, get_current_collection_names, upload_collection_names, remove_collection_names
-import platform 
+from datasets import (
+    get_role,
+    get_dataset_by_id,
+    get_current_collection_names,
+    upload_collection_names,
+    remove_collection_names,
+)
+import platform
 import subprocess
 import os
 
 api = get_namespace(NamespaceEnum.DATASETS)
 
 
-
-
-model_get_role_response = api.model("GetRoleResponse", {
-  "role": fields.String(description="The role of the dataset")
-})
+model_get_role_response = api.model(
+    "GetRoleResponse", {"role": fields.String(description="The role of the dataset")}
+)
 
 
 @api.route("/<string:dataset_name_or_id>/role")
 @api.doc(params={"dataset_name_or_id": "The name or id of the dataset"})
-
-@api.route('/<string:dataset_name_or_id>/role')
+@api.route("/<string:dataset_name_or_id>/role")
 class DatasetRole(Resource):
-  parser = reqparse.RequestParser()
-  parser.add_argument('pennsieve_account', type=str, required=True, help='Pennsieve account', location="args")
+    parser = reqparse.RequestParser()
+    parser.add_argument(
+        "pennsieve_account",
+        type=str,
+        required=True,
+        help="Pennsieve account",
+        location="args",
+    )
 
-  @api.expect(parser)
-  @api.doc(responses={200: 'Success', 400: 'Bad Request', 500: "Internal server error"})
-  def get(self, dataset_name_or_id):
-    args = self.parser.parse_args()
-    pennsieve_account = args.get('pennsieve_account')
+    @api.expect(parser)
+    @api.doc(
+        responses={200: "Success", 400: "Bad Request", 500: "Internal server error"}
+    )
+    def get(self, dataset_name_or_id):
+        args = self.parser.parse_args()
+        pennsieve_account = args.get("pennsieve_account")
 
-    try:
-      return get_role(pennsieve_account, dataset_name_or_id) 
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
+        try:
+            return get_role(pennsieve_account, dataset_name_or_id)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
 
-@api.route('/<string:dataset_id>')
+@api.route("/<string:dataset_id>")
 class Dataset(Resource):
-  @api.doc(responses={200: 'Success', 400: 'Bad Request', 500: "Internal server error"})
-  def get(self, dataset_id):
+    @api.doc(
+        responses={200: "Success", 400: "Bad Request", 500: "Internal server error"}
+    )
+    def get(self, dataset_id):
 
-    try:
-      return get_dataset_by_id(dataset_id) 
-    except Exception as e:
-      # if exception is an HTTPError then check if 400 or 500 
-      if type(e).__name__ == "HTTPError":
-          handle_http_error(e)
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
+        try:
+            return get_dataset_by_id(dataset_id)
+        except Exception as e:
+            # if exception is an HTTPError then check if 400 or 500
+            if type(e).__name__ == "HTTPError":
+                handle_http_error(e)
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
 
+get_current_collections_model = api.model(
+    "currCollections",
+    {
+        "id": fields.String(required=True, description="The id of collection name"),
+        "name": fields.String(required=True, description="Collection name"),
+    },
+)
 
 
-get_current_collections_model = api.model("currCollections", {
-    'id': fields.String(required=True, description="The id of collection name"),
-    'name': fields.String(required=True, description="Collection name")
-})   
-@api.route('/<string:dataset_name>/collections')
+@api.route("/<string:dataset_name>/collections")
 class datasetCollection(Resource):
     curr_collections_parse = reqparse.RequestParser(bundle_errors=True)
-    curr_collections_parse.add_argument('selected_account', type=str, required=True, help="The target account to work with.", location="args")
+    curr_collections_parse.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        help="The target account to work with.",
+        location="args",
+    )
 
     @api.marshal_with(get_current_collections_model, False, 200)
-    @api.doc(responses={500: 'There was an internal error', 400: 'Bad request'})
+    @api.doc(responses={500: "There was an internal error", 400: "Bad request"})
     @api.expect(curr_collections_parse)
-
     def get(self, dataset_name):
         data = self.curr_collections_parse.parse_args()
-        selected_account = data.get('selected_account')
+        selected_account = data.get("selected_account")
 
         try:
             return get_current_collection_names(selected_account, dataset_name)
@@ -80,75 +101,119 @@ def get(self, dataset_name):
                 api.abort(500, str(e))
             raise e
 
-        #remove selected dataset from add argument
-    #change the urls to have dataset ids when being used
+        # remove selected dataset from add argument
+
+    # change the urls to have dataset ids when being used
     upload_collection_parse = reqparse.RequestParser(bundle_errors=True)
-    upload_collection_parse.add_argument('selected_account', type=str, required=True, help="The target account to work with.", location="args")
-    upload_collection_parse.add_argument('collection', type=list, required=True, help='List of the collection tag ids', location="json")
+    upload_collection_parse.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        help="The target account to work with.",
+        location="args",
+    )
+    upload_collection_parse.add_argument(
+        "collection",
+        type=list,
+        required=True,
+        help="List of the collection tag ids",
+        location="json",
+    )
 
     # @api.marshal_with(model_upload_collection_names, False, 200)
     @api.expect(upload_collection_parse)
-    @api.doc(responses={200: 'Success', 403: 'User is not owner or manager to dataset', 500: 'There was an internal server error', 400: 'Bad request'}, description="Returns the updated list of updated collection names and ids.")
+    @api.doc(
+        responses={
+            200: "Success",
+            403: "User is not owner or manager to dataset",
+            500: "There was an internal server error",
+            400: "Bad request",
+        },
+        description="Returns the updated list of updated collection names and ids.",
+    )
     def put(self, dataset_name):
         data = self.upload_collection_parse.parse_args()
 
-        selected_account = data.get('selected_account')
-        collection_tags = data.get('collection')
+        selected_account = data.get("selected_account")
+        collection_tags = data.get("collection")
 
         try:
-            return upload_collection_names(selected_account, dataset_name, collection_tags)
+            return upload_collection_names(
+                selected_account, dataset_name, collection_tags
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
     parser_remove_collections = reqparse.RequestParser(bundle_errors=True)
-    parser_remove_collections.add_argument('selected_account', type=str, required=True, help="The target account to work with.", location="args")
-    parser_remove_collections.add_argument('collection', type=list, required=True, help='List of the collection tag ids', location="json")
-    
-    @api.doc(responses={500: 'There was an server error', 400: 'Bad request', 403: 'User is not owner or manager to dataset', 200: 'Success'})
+    parser_remove_collections.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        help="The target account to work with.",
+        location="args",
+    )
+    parser_remove_collections.add_argument(
+        "collection",
+        type=list,
+        required=True,
+        help="List of the collection tag ids",
+        location="json",
+    )
+
+    @api.doc(
+        responses={
+            500: "There was an server error",
+            400: "Bad request",
+            403: "User is not owner or manager to dataset",
+            200: "Success",
+        }
+    )
     @api.expect(parser_remove_collections)
     def delete(self, dataset_name):
         data = self.parser_remove_collections.parse_args()
-        selected_account = data.get('selected_account')
-        collection_ids = data.get('collection')
+        selected_account = data.get("selected_account")
+        collection_ids = data.get("collection")
 
         try:
-            return remove_collection_names(selected_account, dataset_name, collection_ids)
+            return remove_collection_names(
+                selected_account, dataset_name, collection_ids
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
-
-
-@api.route('/open')
+@api.route("/open")
 class OpenDataset(Resource):
     parser = reqparse.RequestParser()
-    parser.add_argument('dataset_path', type=str, required=True, help='Dataset name', location="args")
+    parser.add_argument(
+        "dataset_path", type=str, required=True, help="Dataset name", location="args"
+    )
 
     @api.expect(parser)
-    @api.doc(responses={200: 'Success', 400: 'Bad Request', 500: "Internal server error"})
+    @api.doc(
+        responses={200: "Success", 400: "Bad Request", 500: "Internal server error"}
+    )
     def get(self):
         args = self.parser.parse_args()
-        dataset_path = args.get('dataset_path')
-
-        
+        dataset_path = args.get("dataset_path")
 
         try:
-          if platform.system() == "Windows":
-            # check the children of the dataset path to see if there is a .pennsieve folder
-            children = os.listdir(dataset_path)
-            # join first child with dataset path
-            child_path = os.path.join(dataset_path, children[0])
-            api.logger.info(f"Opening dataset: {child_path}")
-            subprocess.Popen(f"explorer /select,{str(child_path)}")
-          elif platform.system() == "Darwin":
-            subprocess.Popen(["open", dataset_path])
-          else:
-            subprocess.Popen(["xdg-open", dataset_path])
-
-          return "SUCCESS"
+            if platform.system() == "Windows":
+                # check the children of the dataset path to see if there is a .pennsieve folder
+                children = os.listdir(dataset_path)
+                # join first child with dataset path
+                child_path = os.path.join(dataset_path, children[0])
+                api.logger.info(f"Opening dataset: {child_path}")
+                subprocess.Popen(f"explorer /select,{str(child_path)}")
+            elif platform.system() == "Darwin":
+                subprocess.Popen(["open", dataset_path])
+            else:
+                subprocess.Popen(["xdg-open", dataset_path])
+
+            return "SUCCESS"
         except Exception as e:
-          api.abort(500, str(e))
\ No newline at end of file
+            api.abort(500, str(e))
diff --git a/pyflask/apis/apiDisseminate.py b/pyflask/apis/apiDisseminate.py
index 3198b96ff..66700f1c4 100644
--- a/pyflask/apis/apiDisseminate.py
+++ b/pyflask/apis/apiDisseminate.py
@@ -6,7 +6,7 @@
     bf_withdraw_review_dataset,
     get_files_excluded_from_publishing,
     get_metadata_files,
-    update_files_excluded_from_publishing
+    update_files_excluded_from_publishing,
 )
 from flask_restx import Resource, fields, reqparse
 from namespaces import NamespaceEnum, get_namespace
@@ -16,21 +16,34 @@
 api = get_namespace(NamespaceEnum.DISSEMINATE_DATASETS)
 
 
-model_success_message_response = api.model('SuccessMessageResponse', {
-    "message": fields.String(required=True, description="Success message")
-})
+model_success_message_response = api.model(
+    "SuccessMessageResponse",
+    {"message": fields.String(required=True, description="Success message")},
+)
 
-model_get_doi_response = api.model('DOIResponse', {
-    "doi": fields.String(required=True, description="DOI")
-})
+model_get_doi_response = api.model(
+    "DOIResponse", {"doi": fields.String(required=True, description="DOI")}
+)
 
 
 @api.route("/datasets/<string:dataset_name_or_id>/doi")
 class BfGetDoi(Resource):
     parser = api.parser()
-    parser.add_argument("selected_account", type=str, help="Pennsieve account name", location="args", required=True)
-
-    @api.doc(responses={200: "Success", 400: "Validation Error", 500: "Internal Server Error"})
+    parser.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="args",
+        required=True,
+    )
+
+    @api.doc(
+        responses={
+            200: "Success",
+            400: "Validation Error",
+            500: "Internal Server Error",
+        }
+    )
     @api.expect(parser)
     @api.marshal_with(model_get_doi_response)
     def get(self, dataset_name_or_id):
@@ -45,10 +58,12 @@ def get(self, dataset_name_or_id):
                 api.abort(500, str(e))
             raise e
 
-
     @api.expect(parser)
     @api.marshal_with(model_success_message_response, 200, False)
-    @api.doc(responses={400: "Validation Error", 500: "Internal Server Error"}, description="Reserve a DOI for a dataset")
+    @api.doc(
+        responses={400: "Validation Error", 500: "Internal Server Error"},
+        description="Reserve a DOI for a dataset",
+    )
     def post(self, dataset_name_or_id):
         # get the arguments
         data = self.parser.parse_args()
@@ -62,27 +77,46 @@ def post(self, dataset_name_or_id):
             raise e
 
 
+model_ignore_files_object = api.model(
+    "IgnoreFilesObject",
+    {
+        "datasetId": fields.String(required=True, description="Dataset ID"),
+        "fileName": fields.String(required=True, description="File name"),
+        "id": fields.String(required=True, description="File ID"),
+    },
+)
 
 
-
-model_ignore_files_object = api.model('IgnoreFilesObject', {
-    "datasetId": fields.String(required=True, description="Dataset ID"),
-    "fileName": fields.String(required=True, description="File name"),
-    "id": fields.String(required=True, description="File ID")
-})
-
-
-model_ignore_files_response = api.model('IgnoreFilesResponse', {
-    "ignore_files": fields.List(fields.Nested(model_ignore_files_object), required=True, description="Files excluded from publishing")
-})
+model_ignore_files_response = api.model(
+    "IgnoreFilesResponse",
+    {
+        "ignore_files": fields.List(
+            fields.Nested(model_ignore_files_object),
+            required=True,
+            description="Files excluded from publishing",
+        )
+    },
+)
 
 
-@api.route('/datasets/<string:dataset_name_or_id>/ignore-files')
+@api.route("/datasets/<string:dataset_name_or_id>/ignore-files")
 class BfIgnoreFiles(Resource):
     parser = reqparse.RequestParser()
-    parser.add_argument("selected_account", type=str, help="Pennsieve account name", location="args", required=True)
-
-    @api.doc(responses={200: "Success", 400: "Validation Error", 500: "Internal Server Error"})
+    parser.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="args",
+        required=True,
+    )
+
+    @api.doc(
+        responses={
+            200: "Success",
+            400: "Validation Error",
+            500: "Internal Server Error",
+        }
+    )
     @api.expect(parser)
     @api.marshal_with(model_ignore_files_response)
     def get(self, dataset_name_or_id):
@@ -91,19 +125,29 @@ def get(self, dataset_name_or_id):
         selected_bfaccount = data.get("selected_account")
 
         try:
-            return get_files_excluded_from_publishing(dataset_name_or_id,  selected_bfaccount)
+            return get_files_excluded_from_publishing(
+                dataset_name_or_id, selected_bfaccount
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
-    
 
     parser_ignore_files_put = reqparse.RequestParser()
-    parser_ignore_files_put.add_argument("ignore_files", type=list, help="Files excluded from publishing", location="json", required=True)
+    parser_ignore_files_put.add_argument(
+        "ignore_files",
+        type=list,
+        help="Files excluded from publishing",
+        location="json",
+        required=True,
+    )
 
     @api.expect(parser_ignore_files_put)
     @api.marshal_with(model_success_message_response, 200, False)
-    @api.doc(responses={400: "Validation Error", 500: "Internal Server Error"}, description="Ignore files from publishing")
+    @api.doc(
+        responses={400: "Validation Error", 500: "Internal Server Error"},
+        description="Ignore files from publishing",
+    )
     def put(self, dataset_name_or_id):
         # get the arguments
         data = self.parser_ignore_files_put.parse_args()
@@ -111,9 +155,11 @@ def put(self, dataset_name_or_id):
         ignore_files = data.get("ignore_files")
 
         try:
-            return update_files_excluded_from_publishing(dataset_name_or_id, ignore_files)
+            return update_files_excluded_from_publishing(
+                dataset_name_or_id, ignore_files
+            )
         except Exception as e:
-            # if exception is an HTTPError then check if 400 or 500 
+            # if exception is an HTTPError then check if 400 or 500
             if type(e).__name__ == "HTTPError":
                 handle_http_error(e)
             if notBadRequestException(e):
@@ -121,21 +167,34 @@ def put(self, dataset_name_or_id):
             raise e
 
 
+model_metadata_files_response = api.model(
+    "MetadataFilesResponse",
+    {
+        "metadata_files": fields.List(
+            fields.String, required=True, description="Metadata files"
+        )
+    },
+)
 
 
-
-
-
-model_metadata_files_response = api.model('MetadataFilesResponse', {
-    "metadata_files": fields.List(fields.String, required=True, description="Metadata files")
-})
-
-@api.route('/datasets/<string:dataset_name_or_id>/metadata-files')
+@api.route("/datasets/<string:dataset_name_or_id>/metadata-files")
 class BfMetadataFiles(Resource):
     parser = api.parser()
-    parser.add_argument("selected_account", type=str, help="Pennsieve account name", location="args", required=True)
-
-    @api.doc(responses={200: "Success", 400: "Validation Error", 500: "Internal Server Error"})
+    parser.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="args",
+        required=True,
+    )
+
+    @api.doc(
+        responses={
+            200: "Success",
+            400: "Validation Error",
+            500: "Internal Server Error",
+        }
+    )
     @api.expect(parser)
     @api.marshal_with(model_metadata_files_response)
     def get(self, dataset_name_or_id):
@@ -144,30 +203,41 @@ def get(self, dataset_name_or_id):
         selected_bfaccount = data.get("selected_account")
 
         try:
-            return get_metadata_files(dataset_name_or_id,  selected_bfaccount)
+            return get_metadata_files(dataset_name_or_id, selected_bfaccount)
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
-
-
-
-
-
-model_publishing_status_response = api.model('PublishingStatusResponse', {
-    "publishing_status": fields.String(required=True, description="Publishing status"),
-    "review_request_status": fields.String(required=True, description="Review request status")
-})
+model_publishing_status_response = api.model(
+    "PublishingStatusResponse",
+    {
+        "publishing_status": fields.String(
+            required=True, description="Publishing status"
+        ),
+        "review_request_status": fields.String(
+            required=True, description="Review request status"
+        ),
+    },
+)
 
 
 @api.route("/datasets/<string:dataset_name_or_id>/publishing_status")
 class PublishingStatus(Resource):
     parser = api.parser()
-    parser.add_argument("selected_account", type=str, help="Pennsieve account name", location="args", required=True)
-
-    @api.doc(responses={400: "Validation Error", 500: "Internal Server Error"}, description="Get the publishing status of a dataset.")
+    parser.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="args",
+        required=True,
+    )
+
+    @api.doc(
+        responses={400: "Validation Error", 500: "Internal Server Error"},
+        description="Get the publishing status of a dataset.",
+    )
     @api.expect(parser)
     @api.marshal_with(model_publishing_status_response, 200, False)
     def get(self, dataset_name_or_id):
@@ -184,22 +254,42 @@ def get(self, dataset_name_or_id):
             raise e
 
 
-
-
-
-
-
 @api.route("/datasets/<string:dataset_name_or_id>/publication/request")
 class PublicationRequest(Resource):
 
     publication_parser_post = reqparse.RequestParser()
-    publication_parser_post.add_argument("selected_account", type=str, help="Pennsieve account name", location="args", required=True)
-    publication_parser_post.add_argument("publication_type", type=str, help="Type of publication (string).", location="json", required=True)
-    publication_parser_post.add_argument("embargo_release_date", type=str, help="(optional) Date at which embargo lifts from dataset after publication", location="json", required=False)
-
+    publication_parser_post.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="args",
+        required=True,
+    )
+    publication_parser_post.add_argument(
+        "publication_type",
+        type=str,
+        help="Type of publication (string).",
+        location="json",
+        required=True,
+    )
+    publication_parser_post.add_argument(
+        "embargo_release_date",
+        type=str,
+        help="(optional) Date at which embargo lifts from dataset after publication",
+        location="json",
+        required=False,
+    )
 
     @api.expect(publication_parser_post)
-    @api.doc(responses={200: "Success", 400: "Validation Error", 500: "Internal Server Error", 403: "Forbidden"}, description="Request publication of a dataset.")
+    @api.doc(
+        responses={
+            200: "Success",
+            400: "Validation Error",
+            500: "Internal Server Error",
+            403: "Forbidden",
+        },
+        description="Request publication of a dataset.",
+    )
     def post(self, dataset_name_or_id):
         # get the arguments
         data = self.publication_parser_post.parse_args()
@@ -207,38 +297,46 @@ def post(self, dataset_name_or_id):
         publication_type = data.get("publication_type")
         embargo_release_date = data.get("embargo_release_date")
 
-
         try:
-            return bf_submit_review_dataset(selected_account, dataset_name_or_id, publication_type, embargo_release_date)
+            return bf_submit_review_dataset(
+                selected_account,
+                dataset_name_or_id,
+                publication_type,
+                embargo_release_date,
+            )
         except Exception as e:
             if type(e).__name__ == "HTTPError":
-                api.abort(400, "Ensure the publication type is valid and that the embargo release date is no more than a year out.")
+                api.abort(
+                    400,
+                    "Ensure the publication type is valid and that the embargo release date is no more than a year out.",
+                )
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
+@api.route("/datasets/<string:dataset_name_or_id>/publication/cancel")
+class PublicationCancel(Resource):
 
+    publication_cancel_parser_post = reqparse.RequestParser()
+    publication_cancel_parser_post.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="json",
+        required=True,
+    )
 
+    @api.expect(publication_cancel_parser_post)
+    def post(self, dataset_name_or_id):
 
+        # get the arguments
+        data = self.publication_cancel_parser_post.parse_args()
+        selected_account = data.get("selected_account")
 
-
-@api.route("/datasets/<string:dataset_name_or_id>/publication/cancel")
-class PublicationCancel(Resource):
-    
-        publication_cancel_parser_post = reqparse.RequestParser()
-        publication_cancel_parser_post.add_argument("selected_account", type=str, help="Pennsieve account name", location="json", required=True)
-        @api.expect(publication_cancel_parser_post)
-        def post(self, dataset_name_or_id):
-
-            # get the arguments
-            data = self.publication_cancel_parser_post.parse_args()
-            selected_account = data.get("selected_account")
-
-            try:
-                return bf_withdraw_review_dataset(selected_account, dataset_name_or_id)
-            except Exception as e:
-                if notBadRequestException(e):
-                    api.abort(500, str(e))
-                raise e
-
+        try:
+            return bf_withdraw_review_dataset(selected_account, dataset_name_or_id)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
diff --git a/pyflask/apis/apiManageDatasets.py b/pyflask/apis/apiManageDatasets.py
index 7a70a1f64..1480753c2 100644
--- a/pyflask/apis/apiManageDatasets.py
+++ b/pyflask/apis/apiManageDatasets.py
@@ -1,6 +1,6 @@
 from flask_restx import Resource, fields, reqparse
-from manageDatasets import ( 
-    get_pennsieve_api_key_secret, 
+from manageDatasets import (
+    get_pennsieve_api_key_secret,
     get_number_of_files_and_folders_locally,
     submit_dataset_progress,
     bf_add_account_api_key,
@@ -35,7 +35,7 @@
     get_dataset_readme,
     get_dataset_tags,
     update_dataset_tags,
-    scale_image
+    scale_image,
 )
 
 from namespaces import get_namespace, NamespaceEnum
@@ -51,989 +51,1554 @@
 
 
 # the model for the pennsieve api key secret endpoint defines what is returned from the endpoint
-pennsieveAPIKeyAndSecret = api.model('PennsieveAPIKeyAndSecret', {
-    "success": fields.String(required=True, description="Success or failure"), 
-    "key": fields.String(required=True, description="API key from the Pennsieve platform"),
-    "secret": fields.String(required=True, description="Secret from the Pennsieve platform"), 
-    "name": fields.String(required=True, description="Name of the user?"),
-})
-
+pennsieveAPIKeyAndSecret = api.model(
+    "PennsieveAPIKeyAndSecret",
+    {
+        "success": fields.String(required=True, description="Success or failure"),
+        "key": fields.String(
+            required=True, description="API key from the Pennsieve platform"
+        ),
+        "secret": fields.String(
+            required=True, description="Secret from the Pennsieve platform"
+        ),
+        "name": fields.String(required=True, description="Name of the user?"),
+    },
+)
 
 
-@api.route('/pennsieve_api_key_secret')
+@api.route("/pennsieve_api_key_secret")
 class PennsieveAPIKeyAndSecret(Resource):
 
-  # the parser for the pennsieve and api key secret endpoint defines the parameters that are accepted in the request
-  api_key_parser = reqparse.RequestParser(bundle_errors=True)
-  api_key_parser.add_argument('username', type=str, required=True, help='Username of the user', location="json")
-  api_key_parser.add_argument('password', type=str, required=True, help='Password of the user', location="json")
-  api_key_parser.add_argument('api_key', type=str, required=True, help='API key from the Pennsieve platform', location="json")
-
-  # the response object
-  @api.marshal_with(pennsieveAPIKeyAndSecret, False, 201)
-  # response types/codes
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Username or password are incorrect'})
-  # the request parameters
-  @api.expect(api_key_parser)
-  # get the self, email, password, keyname=SODA_SPARC_API_KEY from the request object 
-  def post(self):
-    # get the request parameters
-    args = self.api_key_parser.parse_args()
-    # get the username, password, and api key from the request object
-    username = args.get('username')
-    password = args.get('password')
-    api_key = args.get('api_key')
-
-    try: 
-      return get_pennsieve_api_key_secret(username, password, api_key)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-
+    # the parser for the pennsieve and api key secret endpoint defines the parameters that are accepted in the request
+    api_key_parser = reqparse.RequestParser(bundle_errors=True)
+    api_key_parser.add_argument(
+        "username",
+        type=str,
+        required=True,
+        help="Username of the user",
+        location="json",
+    )
+    api_key_parser.add_argument(
+        "password",
+        type=str,
+        required=True,
+        help="Password of the user",
+        location="json",
+    )
+    api_key_parser.add_argument(
+        "api_key",
+        type=str,
+        required=True,
+        help="API key from the Pennsieve platform",
+        location="json",
+    )
+
+    # the response object
+    @api.marshal_with(pennsieveAPIKeyAndSecret, False, 201)
+    # response types/codes
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Username or password are incorrect",
+        }
+    )
+    # the request parameters
+    @api.expect(api_key_parser)
+    # get the self, email, password, keyname=SODA_SPARC_API_KEY from the request object
+    def post(self):
+        # get the request parameters
+        args = self.api_key_parser.parse_args()
+        # get the username, password, and api key from the request object
+        username = args.get("username")
+        password = args.get("password")
+        api_key = args.get("api_key")
+
+        try:
+            return get_pennsieve_api_key_secret(username, password, api_key)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+getNumberOfFilesAndFoldersLocally = api.model(
+    "FilesAndFolders",
+    {
+        "totalFiles": fields.Integer(
+            required=True, description="Total number of files in the dataset"
+        ),
+        "totalDir": fields.Integer(
+            required=True, description="Total number of folders in the dataset"
+        ),
+    },
+)
 
-getNumberOfFilesAndFoldersLocally =  api.model('FilesAndFolders', {
-    "totalFiles": fields.Integer(required=True, description="Total number of files in the dataset"),
-    "totalDir": fields.Integer(required=True, description="Total number of folders in the dataset"),
-})
 
-@api.route('/get_number_of_files_and_folders_locally')
+@api.route("/get_number_of_files_and_folders_locally")
 class GetNumberOfFilesAndFoldersLocally(Resource):
 
-  files_folders_parser = reqparse.RequestParser(bundle_errors=True)
-  files_folders_parser.add_argument('filepath', type=str, required=True, help='Path to the local dataset folder', location="args")
-
-  @api.marshal_with( getNumberOfFilesAndFoldersLocally, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'})
-  # the request parameters
-  @api.expect(files_folders_parser)
-  def get(self):
-    # get the filepath from the request object
-    data = self.files_folders_parser.parse_args()
-    filepath = data.get('filepath')
-
-    api.logger.info(f' get_number_of_files_and_folders_locally --  args -- filepath: {filepath}')
-
-    if filepath is None:
-      api.abort(400, "Cannot get number of files and folders locally without a filepath")
-
-    try:
-      return get_number_of_files_and_folders_locally(filepath)
-    except Exception as e:
-      api.abort(500, e.args[0])
-    
-
+    files_folders_parser = reqparse.RequestParser(bundle_errors=True)
+    files_folders_parser.add_argument(
+        "filepath",
+        type=str,
+        required=True,
+        help="Path to the local dataset folder",
+        location="args",
+    )
+
+    @api.marshal_with(getNumberOfFilesAndFoldersLocally, False, 200)
+    @api.doc(responses={500: "There was an internal server error", 400: "Bad request"})
+    # the request parameters
+    @api.expect(files_folders_parser)
+    def get(self):
+        # get the filepath from the request object
+        data = self.files_folders_parser.parse_args()
+        filepath = data.get("filepath")
 
+        api.logger.info(
+            f" get_number_of_files_and_folders_locally --  args -- filepath: {filepath}"
+        )
 
+        if filepath is None:
+            api.abort(
+                400, "Cannot get number of files and folders locally without a filepath"
+            )
 
+        try:
+            return get_number_of_files_and_folders_locally(filepath)
+        except Exception as e:
+            api.abort(500, e.args[0])
 
 
 ## the model for the submit_dataset_progress endpoint defines what is returned from the endpoint
-successMessage = api.model('SuccessMessage', {
-  'message': fields.String(required=True, description="A message indicating success of the operation."),
-  })
-
-model_status_options = api.model('StatusOptions', {
-  'id': fields.String(required=True, description="The id of the dataset"),
-  'name': fields.String(required=True, description="The name of the dataset"),
-  'displayName': fields.String(required=True, description="The display name of the dataset"),
-  'color': fields.String(required=True, description="The color of the dataset"),
-  'inUse': fields.Boolean(required=True, description="Whether the dataset is in use"),
-})
-
-model_get_dataset_status_response = api.model('GetDatasetStatusResponse', {
-  'status_options': fields.List(fields.Nested(model_status_options), required=True, description="The status of the dataset"),
-  "current_status": fields.String(required=True, description="The current status of the dataset"),
-})
-
-@api.route('/bf_dataset_status')
-class BfChangeDatasetStatus(Resource):
-
-
-  # selected_bfaccount, selected_bfdataset, selected_status
-  parser_change_dataset_status = reqparse.RequestParser(bundle_errors=True)
-  parser_change_dataset_status.add_argument('selected_bfaccount', type=str, required=True, help='The selected bfaccount.', location='json')
-  parser_change_dataset_status.add_argument('selected_bfdataset', type=str, required=True, help='The selected bfdataset id or name.', location='json')
-  parser_change_dataset_status.add_argument('selected_status', type=str, required=True, help='The target status for the dataset.', location='json')
-
-  @api.marshal_with(successMessage, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Change the status of a dataset.")
-  # the request parameters
-  @api.expect(parser_change_dataset_status)
-  def put(self):
-    # get the selected_bfaccount, selected_bfdataset, selected_status from the request object
-    data = self.parser_change_dataset_status.parse_args(strict=True)
-    selected_bfaccount = data['selected_bfaccount']
-    selected_bfdataset = data['selected_bfdataset']
-    selected_status = data['selected_status']
-
-    api.logger.info(f' bf_change_dataset_status --  args -- selected_bfaccount: {selected_bfaccount} selected_bfdataset: {selected_bfdataset} selected_status: {selected_status}')
-
-    try:
-      return bf_change_dataset_status(selected_bfaccount, selected_bfdataset, selected_status)
-    except Exception as e:
-      # something unexpected happened so abort with a 500
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-  parser_dataset_status = reqparse.RequestParser(bundle_errors=True)
-  
-  parser_dataset_status.add_argument('selected_account', type=str, required=True, help='The selected bfaccount.', location='args')
-  parser_dataset_status.add_argument('selected_dataset', type=str, required=True, help='The selected bfdataset id or name.', location='args')
-
-  @api.marshal_with(model_get_dataset_status_response, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Get the status of a dataset and available statuses.")
-  @api.expect(parser_dataset_status)
-  def get(self):
-
-    # get the selected_bfaccount, selected_bfdataset from the request object
-    data = self.parser_dataset_status.parse_args()
-    selected_bfaccount = data.get('selected_account')
-    selected_bfdataset = data.get('selected_dataset')
+successMessage = api.model(
+    "SuccessMessage",
+    {
+        "message": fields.String(
+            required=True, description="A message indicating success of the operation."
+        ),
+    },
+)
 
-    try:
-      return bf_get_dataset_status(selected_bfaccount, selected_bfdataset)
-    except Exception as e:
-      # something unexpected happened so abort with a 500
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
+model_status_options = api.model(
+    "StatusOptions",
+    {
+        "id": fields.String(required=True, description="The id of the dataset"),
+        "name": fields.String(required=True, description="The name of the dataset"),
+        "displayName": fields.String(
+            required=True, description="The display name of the dataset"
+        ),
+        "color": fields.String(required=True, description="The color of the dataset"),
+        "inUse": fields.Boolean(
+            required=True, description="Whether the dataset is in use"
+        ),
+    },
+)
 
+model_get_dataset_status_response = api.model(
+    "GetDatasetStatusResponse",
+    {
+        "status_options": fields.List(
+            fields.Nested(model_status_options),
+            required=True,
+            description="The status of the dataset",
+        ),
+        "current_status": fields.String(
+            required=True, description="The current status of the dataset"
+        ),
+    },
+)
 
 
+@api.route("/bf_dataset_status")
+class BfChangeDatasetStatus(Resource):
 
+    # selected_bfaccount, selected_bfdataset, selected_status
+    parser_change_dataset_status = reqparse.RequestParser(bundle_errors=True)
+    parser_change_dataset_status.add_argument(
+        "selected_bfaccount",
+        type=str,
+        required=True,
+        help="The selected bfaccount.",
+        location="json",
+    )
+    parser_change_dataset_status.add_argument(
+        "selected_bfdataset",
+        type=str,
+        required=True,
+        help="The selected bfdataset id or name.",
+        location="json",
+    )
+    parser_change_dataset_status.add_argument(
+        "selected_status",
+        type=str,
+        required=True,
+        help="The target status for the dataset.",
+        location="json",
+    )
 
+    @api.marshal_with(successMessage, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Change the status of a dataset.",
+    )
+    # the request parameters
+    @api.expect(parser_change_dataset_status)
+    def put(self):
+        # get the selected_bfaccount, selected_bfdataset, selected_status from the request object
+        data = self.parser_change_dataset_status.parse_args(strict=True)
+        selected_bfaccount = data["selected_bfaccount"]
+        selected_bfdataset = data["selected_bfdataset"]
+        selected_status = data["selected_status"]
+
+        api.logger.info(
+            f" bf_change_dataset_status --  args -- selected_bfaccount: {selected_bfaccount} selected_bfdataset: {selected_bfdataset} selected_status: {selected_status}"
+        )
+
+        try:
+            return bf_change_dataset_status(
+                selected_bfaccount, selected_bfdataset, selected_status
+            )
+        except Exception as e:
+            # something unexpected happened so abort with a 500
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_dataset_status = reqparse.RequestParser(bundle_errors=True)
+
+    parser_dataset_status.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        help="The selected bfaccount.",
+        location="args",
+    )
+    parser_dataset_status.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        help="The selected bfdataset id or name.",
+        location="args",
+    )
+
+    @api.marshal_with(model_get_dataset_status_response, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Get the status of a dataset and available statuses.",
+    )
+    @api.expect(parser_dataset_status)
+    def get(self):
 
+        # get the selected_bfaccount, selected_bfdataset from the request object
+        data = self.parser_dataset_status.parse_args()
+        selected_bfaccount = data.get("selected_account")
+        selected_bfdataset = data.get("selected_dataset")
+
+        try:
+            return bf_get_dataset_status(selected_bfaccount, selected_bfdataset)
+        except Exception as e:
+            # something unexpected happened so abort with a 500
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+account_list_model = api.model(
+    "AccountList",
+    {
+        "accounts": fields.List(
+            fields.String, required=True, description="List of the user's accounts"
+        ),
+    },
+)
 
-account_list_model = api.model('AccountList', {
-  'accounts': fields.List(fields.String, required=True, description="List of the user's accounts"),
-  })
 
-@api.route('/bf_account_list')
+@api.route("/bf_account_list")
 class BfAccountList(Resource):
-  @api.marshal_with(account_list_model, False, 200)
-  @api.doc(responses={500: 'There was an internal server error'}, description="Returns a list of the user's accounts stored in the system.")
-  def get(self):
-    try:
-      return bf_account_list()
-    except Exception as e:
-      api.abort(500, str(e))
-
-
-
-
-
-
+    @api.marshal_with(account_list_model, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Returns a list of the user's accounts stored in the system.",
+    )
+    def get(self):
+        try:
+            return bf_account_list()
+        except Exception as e:
+            api.abort(500, str(e))
+
+
+default_account_model = api.model(
+    "DefaultAccount",
+    {
+        "defaultAccounts": fields.List(
+            fields.String, required=True, description="The default account"
+        ),
+    },
+)
 
-default_account_model = api.model('DefaultAccount', {
-  'defaultAccounts': fields.List(fields.String,required=True, description="The default account"),
-})
 
-@api.route('/bf_default_account_load')
+@api.route("/bf_default_account_load")
 class BfDefaultAccountLoad(Resource):
-  @api.marshal_with(default_account_model, False, 200)
-  @api.doc(responses={500: 'There was an internal server error'}, description="Returns the first valid account as the default account. Usually SODA-Pennsieve.")
-  def get(self):
-    try:
-      return bf_default_account_load()
-    except Exception as e:
-      api.abort(500, str(e))
-
-
-
-
-
-
+    @api.marshal_with(default_account_model, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Returns the first valid account as the default account. Usually SODA-Pennsieve.",
+    )
+    def get(self):
+        try:
+            return bf_default_account_load()
+        except Exception as e:
+            api.abort(500, str(e))
+
+
+users_response_model = api.model(
+    "Users",
+    {
+        "users": fields.List(
+            fields.String,
+            required=True,
+            description="List of the accounts in the user's organization.",
+        ),
+    },
+)
 
-users_response_model = api.model('Users', {
-  'users': fields.List(fields.String, required=True, description="List of the accounts in the user's organization."),
-})
 
-@api.route('/bf_get_users')
+@api.route("/bf_get_users")
 class BfGetUsers(Resource):
 
-  parser_get_users = reqparse.RequestParser(bundle_errors=True)
-  parser_get_users.add_argument('selected_account', type=str, required=True, location='args', help='The account to get associated users for.')
-
-
-  @api.marshal_with(users_response_model, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns a list of the users in the given Pennsieve Account's organization.")
-  @api.expect(parser_get_users)
-  def get(self):
-    try:
-      # get the selected account out of the request args
-      data = self.parser_get_users.parse_args()
-
-      selected_account = data.get('selected_account')
-
-      return bf_get_users(selected_account)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-
-
-
+    parser_get_users = reqparse.RequestParser(bundle_errors=True)
+    parser_get_users.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The account to get associated users for.",
+    )
+
+    @api.marshal_with(users_response_model, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns a list of the users in the given Pennsieve Account's organization.",
+    )
+    @api.expect(parser_get_users)
+    def get(self):
+        try:
+            # get the selected account out of the request args
+            data = self.parser_get_users.parse_args()
+
+            selected_account = data.get("selected_account")
+
+            return bf_get_users(selected_account)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_bf_get_teams_response = api.model(
+    "BfGetTeamsResponse",
+    {
+        "teams": fields.List(
+            fields.String,
+            required=True,
+            description="List of the teams in the user's organization.",
+        )
+    },
+)
 
-model_bf_get_teams_response = api.model('BfGetTeamsResponse', {'teams': fields.List(fields.String, required=True, description="List of the teams in the user's organization.")})
 
-@api.route('/bf_get_teams')
+@api.route("/bf_get_teams")
 class BfGetTeams(Resource):
 
-  parser_get_teams = reqparse.RequestParser(bundle_errors=True)
-  parser_get_teams.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve inter-organization teams for.')
-
-  @api.marshal_with(model_bf_get_teams_response, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns a list of the teams in the given Pennsieve Account's organization.")
-  def get(self):
-    try:
-      # get the selected account out of the request args
-      selected_account = self.parser_get_teams.parse_args().get('selected_account')
-      
-      return bf_get_teams(selected_account)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-
-
+    parser_get_teams = reqparse.RequestParser(bundle_errors=True)
+    parser_get_teams.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve inter-organization teams for.",
+    )
+
+    @api.marshal_with(model_bf_get_teams_response, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns a list of the teams in the given Pennsieve Account's organization.",
+    )
+    def get(self):
+        try:
+            # get the selected account out of the request args
+            selected_account = self.parser_get_teams.parse_args().get(
+                "selected_account"
+            )
+
+            return bf_get_teams(selected_account)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_account_details_response = api.model(
+    "AccountDetailsResponse",
+    {
+        "account_details": fields.String(
+            required=True,
+            description="The email and organization for the given Pennsieve account.",
+        ),
+        "organization_id": fields.String(
+            required=True,
+            description="The organization id for the given Pennsieve account.",
+        ),
+    },
+)
 
-model_account_details_response = api.model('AccountDetailsResponse', {
-  'account_details': fields.String(required=True, description="The email and organization for the given Pennsieve account."),
-  "organization_id": fields.String(required=True, description="The organization id for the given Pennsieve account."),
-})
 
-@api.route('/bf_account_details')
+@api.route("/bf_account_details")
 class BfAccountDetails(Resource):
 
-  parser_account_details = reqparse.RequestParser(bundle_errors=True)
-  parser_account_details.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve details for.')
-
-  @api.marshal_with(model_account_details_response, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns the email and organization for the given Pennsieve account.")
-  @api.expect(parser_account_details)
-  def get(self):
-    try:
-      # get the selected account out of the request args
-      selected_account = self.parser_account_details.parse_args().get('selected_account')
-      return bf_account_details(selected_account)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-
-
-
+    parser_account_details = reqparse.RequestParser(bundle_errors=True)
+    parser_account_details.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve details for.",
+    )
+
+    @api.marshal_with(model_account_details_response, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns the email and organization for the given Pennsieve account.",
+    )
+    @api.expect(parser_account_details)
+    def get(self):
+        try:
+            # get the selected account out of the request args
+            selected_account = self.parser_account_details.parse_args().get(
+                "selected_account"
+            )
+            return bf_account_details(selected_account)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_pennsieve_agent_response = api.model(
+    "PennsieveAgentResponse",
+    {
+        "agent_version": fields.String(
+            required=True,
+            description="The version number of the installed Pennsieve Agent.",
+        ),
+    },
+)
 
-model_pennsieve_agent_response = api.model('PennsieveAgentResponse', {
-  'agent_version': fields.String(required=True, description="The version number of the installed Pennsieve Agent."),
-})
 
-@api.route('/check_agent_install')
+@api.route("/check_agent_install")
 class CheckAgentInstall(Resource):
-  @api.marshal_with(model_pennsieve_agent_response, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: "Pennsieve Agent is not installed"}, description="Returns the Pennsieve Agent version if it is installed.")
-  def get(self):
-    from pennsieve.api.agent import AgentError
-    try:
-      return check_agent_install()
-    except Exception as e:
-      # if the exception is an AgentError, then return a 500 
-      if isinstance(e, AgentError):
-        api.abort(400, str(e))
-      api.abort(500, str(e))
-
-
-
-
-
-
-
+    @api.marshal_with(model_pennsieve_agent_response, False, 200)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Pennsieve Agent is not installed",
+        },
+        description="Returns the Pennsieve Agent version if it is installed.",
+    )
+    def get(self):
+        from pennsieve.api.agent import AgentError
+
+        try:
+            return check_agent_install()
+        except Exception as e:
+            # if the exception is an AgentError, then return a 500
+            if isinstance(e, AgentError):
+                api.abort(400, str(e))
+            api.abort(500, str(e))
+
+
+model_account_dataset = api.model(
+    "AccountDataset",
+    {
+        "id": fields.String(required=True, description="The UUID of the dataset."),
+        "name": fields.String(
+            required=True,
+            description="The name of the dataset for the given Pennsieve account.",
+        ),
+        "role": fields.String(
+            required=True, description="The dataset account's role for the dataset"
+        ),
+    },
+)
 
-model_account_dataset = api.model('AccountDataset', {
-  'id': fields.String(required=True, description="The UUID of the dataset."),
-  'name': fields.String(required=True, description="The name of the dataset for the given Pennsieve account."),
-  'role': fields.String(required=True, description="The dataset account's role for the dataset"),
-})
+model_account_datasets_list_response = api.model(
+    "AccountDatasetsResponse",
+    {
+        "datasets": fields.List(
+            fields.Nested(model_account_dataset),
+            required=True,
+            description="List of the datasets in the user's organization.",
+        ),
+    },
+)
 
-model_account_datasets_list_response = api.model('AccountDatasetsResponse', {
-  'datasets': fields.List(fields.Nested(model_account_dataset), required=True, description="List of the datasets in the user's organization."),
-})
 
-@api.route('/bf_dataset_account')
+@api.route("/bf_dataset_account")
 class BfDatasetAccount(Resource):
 
-  parser_dataset_account = reqparse.RequestParser(bundle_errors=True)
-  parser_dataset_account.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve datasets for.')
-
-  @api.marshal_with(model_account_datasets_list_response, False, 200)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns a list of the datasets the given Pennsieve account has access to.")
-  @api.expect(parser_dataset_account)
-  def get(self):
-    try:
-      # get the selected account out of the request args
-      selected_account = self.parser_dataset_account.parse_args().get('selected_account')
-      return bf_dataset_account(selected_account)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-
-
-
+    parser_dataset_account = reqparse.RequestParser(bundle_errors=True)
+    parser_dataset_account.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve datasets for.",
+    )
+
+    @api.marshal_with(model_account_datasets_list_response, False, 200)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns a list of the datasets the given Pennsieve account has access to.",
+    )
+    @api.expect(parser_dataset_account)
+    def get(self):
+        try:
+            # get the selected account out of the request args
+            selected_account = self.parser_dataset_account.parse_args().get(
+                "selected_account"
+            )
+            return bf_dataset_account(selected_account)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_get_dataset_subtitle_response = api.model(
+    "GetDatasetSubtitleResponse",
+    {
+        "subtitle": fields.String(
+            required=True, description="The subtitle for the given dataset."
+        ),
+    },
+)
 
-model_get_dataset_subtitle_response = api.model('GetDatasetSubtitleResponse', {
-  'subtitle': fields.String(required=True, description="The subtitle for the given dataset."),
-})
 
-@api.route('/bf_dataset_subtitle')
+@api.route("/bf_dataset_subtitle")
 class DatasetSubtitle(Resource):
 
-  parser_dataset_subtitle = reqparse.RequestParser(bundle_errors=True)
-  parser_dataset_subtitle.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve the dataset subitle for.')
-  parser_dataset_subtitle.add_argument('selected_dataset', type=str, required=True, location='args', help='The name or id of the dataset to retrieve the subtitle for.')
-
-
-  @api.marshal_with(model_get_dataset_subtitle_response, False, 200)
-  @api.expect(parser_dataset_subtitle)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns the subtitle for the given dataset.")
-  def get(self):
-    data = self.parser_dataset_subtitle.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-
-    try:
-      return bf_get_subtitle(selected_account, selected_dataset)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-  parser_add_dataset_subtitle = parser_dataset_subtitle.copy()
-  parser_add_dataset_subtitle.add_argument('input_subtitle', type=str, required=True, location='json', help='The subtitle to add to the dataset.')
-
-  @api.marshal_with(successMessage, False, 200)
-  @api.expect(parser_add_dataset_subtitle)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 403: 'Forbidden'}, description="Adds a subtitle to the given dataset.")
-  def put(self): 
-    # update the dataset subtitle for the selected account and dataset ID
-    data = self.parser_add_dataset_subtitle.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-    input_subtitle = data.get('input_subtitle')
-
-    try:
-      return bf_add_subtitle(selected_account, selected_dataset, input_subtitle)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-
-
+    parser_dataset_subtitle = reqparse.RequestParser(bundle_errors=True)
+    parser_dataset_subtitle.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve the dataset subitle for.",
+    )
+    parser_dataset_subtitle.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        location="args",
+        help="The name or id of the dataset to retrieve the subtitle for.",
+    )
+
+    @api.marshal_with(model_get_dataset_subtitle_response, False, 200)
+    @api.expect(parser_dataset_subtitle)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns the subtitle for the given dataset.",
+    )
+    def get(self):
+        data = self.parser_dataset_subtitle.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+
+        try:
+            return bf_get_subtitle(selected_account, selected_dataset)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_add_dataset_subtitle = parser_dataset_subtitle.copy()
+    parser_add_dataset_subtitle.add_argument(
+        "input_subtitle",
+        type=str,
+        required=True,
+        location="json",
+        help="The subtitle to add to the dataset.",
+    )
 
+    @api.marshal_with(successMessage, False, 200)
+    @api.expect(parser_add_dataset_subtitle)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            403: "Forbidden",
+        },
+        description="Adds a subtitle to the given dataset.",
+    )
+    def put(self):
+        # update the dataset subtitle for the selected account and dataset ID
+        data = self.parser_add_dataset_subtitle.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        input_subtitle = data.get("input_subtitle")
+
+        try:
+            return bf_add_subtitle(selected_account, selected_dataset, input_subtitle)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_get_dataset_description_response = api.model(
+    "GetDatasetDescriptionResponse",
+    {
+        "description": fields.String(
+            required=True, description="The description for the given dataset."
+        ),
+    },
+)
 
-model_get_dataset_description_response = api.model('GetDatasetDescriptionResponse', {
-  'description': fields.String(required=True, description="The description for the given dataset."),
-})
 
-@api.route('/bf_dataset_description')
+@api.route("/bf_dataset_description")
 class DatasetDescription(Resource):
-  
+
     parser_dataset_description = reqparse.RequestParser(bundle_errors=True)
-    parser_dataset_description.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve the dataset description for.')
-    parser_dataset_description.add_argument('selected_dataset', type=str, required=True, location='args', help='The name or id of the dataset to retrieve the description for.')
+    parser_dataset_description.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve the dataset description for.",
+    )
+    parser_dataset_description.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        location="args",
+        help="The name or id of the dataset to retrieve the description for.",
+    )
 
     @api.marshal_with(model_get_dataset_description_response, False, 200)
     @api.expect(parser_dataset_description)
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns the description for the given dataset.")
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns the description for the given dataset.",
+    )
     def get(self):
-      data = self.parser_dataset_description.parse_args()
-      selected_account = data.get('selected_account')
-      selected_dataset = data.get('selected_dataset')
-
-      try:
-        return bf_get_description(selected_account, selected_dataset)
-      except Exception as e:
-        if notBadRequestException(e):
-          api.abort(500, str(e))
-        raise e
+        data = self.parser_dataset_description.parse_args()
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
 
+        try:
+            return bf_get_description(selected_account, selected_dataset)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
     parser_add_dataset_description = parser_dataset_description.copy()
-    parser_add_dataset_description.add_argument('input_description', type=str, required=True, location='json', help='The description to add to the dataset.')
+    parser_add_dataset_description.add_argument(
+        "input_description",
+        type=str,
+        required=True,
+        location="json",
+        help="The description to add to the dataset.",
+    )
 
     @api.marshal_with(successMessage, False, 200)
     @api.expect(parser_add_dataset_description)
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 403: 'Forbidden'}, description="Adds a description to the given dataset.")
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            403: "Forbidden",
+        },
+        description="Adds a description to the given dataset.",
+    )
     def put(self):
-      # update the dataset description for the selected account and dataset ID
-      data = self.parser_add_dataset_description.parse_args()
-
-      selected_account = data.get('selected_account')
-      selected_dataset = data.get('selected_dataset')
-      input_description = data.get('input_description')
-
-      try:
-        return bf_add_description(selected_account, selected_dataset, input_description)
-      except Exception as e:
-        if notBadRequestException(e):
-          api.abort(500, str(e))
-        raise e
-
-
-
-
+        # update the dataset description for the selected account and dataset ID
+        data = self.parser_add_dataset_description.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        input_description = data.get("input_description")
+
+        try:
+            return bf_add_description(
+                selected_account, selected_dataset, input_description
+            )
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_get_permissions_team = api.model(
+    "GetPermissionsTeam",
+    {
+        "team_id": fields.String(required=True, description="The name of the team."),
+        "team_role": fields.String(required=True, description="The role of the team."),
+    },
+)
 
+model_get_permissions_response = api.model(
+    "GetPermissionsResponse",
+    {
+        "permissions": fields.List(
+            fields.String,
+            required=True,
+            description="A list of the users/organizations/teams and their roles (viewer, manager, owner, etc) for the given dataset.",
+        ),
+        "team_ids": fields.List(
+            fields.Nested(model_get_permissions_team),
+            required=True,
+            description="A list of the team ids for the given dataset.",
+        ),
+    },
+)
 
 
-model_get_permissions_team = api.model('GetPermissionsTeam', {
-  'team_id': fields.String(required=True, description="The name of the team."),
-  'team_role': fields.String(required=True, description="The role of the team."),
-})
+@api.route("/bf_dataset_permissions")
+class DatasetPermissions(Resource):
+    parser_dataset_permissions = reqparse.RequestParser(bundle_errors=True)
+    parser_dataset_permissions.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve the dataset permissions for.",
+    )
+    parser_dataset_permissions.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        location="args",
+        help="The name or id of the dataset to retrieve the permissions for.",
+    )
+
+    @api.marshal_with(model_get_permissions_response, False, 200)
+    @api.expect(parser_dataset_permissions)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns the permissions for the given dataset. Permissions are a list of the users/organizations/teams and their roles (viewer, manager, owner, etc) for the given dataset. Format: ['organization: org_name, role: viewer', 'user: username, role: manager]",
+    )
+    def get(self):
+        data = self.parser_dataset_permissions.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+
+        try:
+            return bf_get_permission(selected_account, selected_dataset)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_add_dataset_permissions = parser_dataset_permissions.copy()
+    parser_add_dataset_permissions.add_argument(
+        "scope",
+        type=str,
+        required=True,
+        location="args",
+        help="Defines who or what will have their permissions for the dataset changed. Options are: team or user.",
+    )
+    parser_add_dataset_permissions.add_argument(
+        "input_role",
+        type=str,
+        required=True,
+        location="json",
+        help="The permissions to add to the dataset. Can be either: owner, manager, viewer, remove current permissions.",
+    )
+    parser_add_dataset_permissions.add_argument(
+        "name",
+        type=str,
+        required=True,
+        location="args",
+        help="The name of the team or user to change permissions for.",
+    )
 
-model_get_permissions_response = api.model('GetPermissionsResponse', {
-  'permissions': fields.List(fields.String, required=True, description="A list of the users/organizations/teams and their roles (viewer, manager, owner, etc) for the given dataset."),
-  'team_ids': fields.List(fields.Nested(model_get_permissions_team), required=True, description="A list of the team ids for the given dataset."),
-})
+    @api.marshal_with(successMessage, False, 200)
+    @api.expect(parser_add_dataset_permissions)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            403: "Forbidden",
+        },
+        description="Adds permissions to the given dataset. Permissions are a list of the users/organizations/teams and their roles (viewer, manager, owner, etc) for the given dataset.",
+    )
+    def patch(self):
+        # update the dataset permissions for the selected account and dataset ID
+        data = self.parser_add_dataset_permissions.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        scope = data.get("scope")
+        input_role = data.get("input_role")
+        name = data.get("name")
+
+        if scope not in ["team", "user"]:
+            api.abort(400, "Invalid scope. Must be either team or user.")
+
+        if scope == "team":
+            try:
+                return bf_add_permission_team(
+                    selected_account, selected_dataset, name, input_role
+                )
+            except Exception as e:
+                if notBadRequestException(e):
+                    api.abort(500, str(e))
+                raise e
+        else:
+            try:
+                return bf_add_permission(
+                    selected_account, selected_dataset, name, input_role
+                )
+            except Exception as e:
+                if notBadRequestException(e):
+                    api.abort(500, str(e))
+                raise e
+
+
+scale_image_model = api.model(
+    "postScaledImage",
+    {
+        "scaled_image_path": fields.String(
+            required=True, description="The file path for the scaled image."
+        ),
+    },
+)
 
-@api.route('/bf_dataset_permissions')
-class DatasetPermissions(Resource):
-  parser_dataset_permissions = reqparse.RequestParser(bundle_errors=True)
-  parser_dataset_permissions.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve the dataset permissions for.')
-  parser_dataset_permissions.add_argument('selected_dataset', type=str, required=True, location='args', help='The name or id of the dataset to retrieve the permissions for.')
-
- 
-  @api.marshal_with(model_get_permissions_response, False, 200)
-  @api.expect(parser_dataset_permissions)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns the permissions for the given dataset. Permissions are a list of the users/organizations/teams and their roles (viewer, manager, owner, etc) for the given dataset. Format: ['organization: org_name, role: viewer', 'user: username, role: manager]")
-  def get(self):
-    data = self.parser_dataset_permissions.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-
-    try:
-      return bf_get_permission(selected_account, selected_dataset)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-  
-  parser_add_dataset_permissions = parser_dataset_permissions.copy()
-  parser_add_dataset_permissions.add_argument('scope', type=str, required=True, location='args', help='Defines who or what will have their permissions for the dataset changed. Options are: team or user.')
-  parser_add_dataset_permissions.add_argument('input_role', type=str, required=True, location='json', help='The permissions to add to the dataset. Can be either: owner, manager, viewer, remove current permissions.')
-  parser_add_dataset_permissions.add_argument('name', type=str, required=True, location='args', help='The name of the team or user to change permissions for.')
-
-  @api.marshal_with(successMessage, False, 200)
-  @api.expect(parser_add_dataset_permissions)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 403: 'Forbidden'}, description="Adds permissions to the given dataset. Permissions are a list of the users/organizations/teams and their roles (viewer, manager, owner, etc) for the given dataset.")
-  def patch(self):
-    # update the dataset permissions for the selected account and dataset ID
-    data = self.parser_add_dataset_permissions.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-    scope = data.get('scope')
-    input_role = data.get('input_role')
-    name = data.get('name')
-
-    if scope not in ['team', 'user']:
-      api.abort(400, 'Invalid scope. Must be either team or user.')
-
-    if scope == 'team':
-      try:
-        return bf_add_permission_team(selected_account, selected_dataset, name, input_role)
-      except Exception as e:
-        if notBadRequestException(e):
-          api.abort(500, str(e))
-        raise e
-    else:
-      try:
-        return bf_add_permission(selected_account, selected_dataset, name, input_role)
-      except Exception as e:
-        if notBadRequestException(e):
-          api.abort(500, str(e))
-        raise e
-
-
-scale_image_model = api.model("postScaledImage", {
-  'scaled_image_path': fields.String(required=True, description="The file path for the scaled image."),
-})
 
 @api.route("/bf_banner_image/scale_image")
 class scaleBannerImage(Resource):
-  parser_image = reqparse.RequestParser(bundle_errors=True)
-  parser_image.add_argument('image_file_path', type=str, required=True, location='json', help='The file path of the image to be resized.')
-
-  @api.doc(responses={500: 'There was an internal server error'}, description="Scale an image to be under 5Mb in size.")
-  @api.expect(parser_image)
-  @api.marshal_with(scale_image_model, False, 200)
-  def post(self):
-    data = self.parser_image.parse_args()
-    image_path = data.get('image_file_path')
-    try:
-      return scale_image(image_path)
-    except Exception as e:
-      api.abort(500, str(e))
-
-
-model_get_banner_image_response = api.model('GetBannerImageResponse', {
-  'banner_image': fields.String(required=True, description="AWS URI for the dataset banner image."),
-})
-@api.route("/bf_banner_image")
-class BfBannerImage(Resource):
-  parser_banner_image = reqparse.RequestParser(bundle_errors=True)
-  parser_banner_image.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve the banner image for.')
-  parser_banner_image.add_argument('selected_dataset', type=str, required=True, location='args', help='The name or id of the dataset to retrieve the banner image for.')
-
-  @api.marshal_with(model_get_banner_image_response, False, 200)
-  @api.expect(parser_banner_image)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns the AWS URI for the dataset banner image.")
-  def get(self):
-    data = self.parser_banner_image.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-
-    try:
-      return bf_get_banner_image(selected_account, selected_dataset)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-  parser_add_banner_image = parser_banner_image.copy()
-  parser_add_banner_image.add_argument('input_banner_image_path', type=str, required=True, location='json', help='File path to the local banner image. Will be uploaded to AWS.')
-
-  @api.marshal_with(successMessage, False, 200)
-  @api.expect(parser_add_banner_image)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 403: 'Forbidden'}, description="Adds a banner image to the given dataset. The banner image will be uploaded to AWS.")
-  def put(self):
-    # update the dataset banner image for the selected account and dataset ID
-    data = self.parser_add_banner_image.parse_args()
+    parser_image = reqparse.RequestParser(bundle_errors=True)
+    parser_image.add_argument(
+        "image_file_path",
+        type=str,
+        required=True,
+        location="json",
+        help="The file path of the image to be resized.",
+    )
+
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Scale an image to be under 5Mb in size.",
+    )
+    @api.expect(parser_image)
+    @api.marshal_with(scale_image_model, False, 200)
+    def post(self):
+        data = self.parser_image.parse_args()
+        image_path = data.get("image_file_path")
+        try:
+            return scale_image(image_path)
+        except Exception as e:
+            api.abort(500, str(e))
+
+
+model_get_banner_image_response = api.model(
+    "GetBannerImageResponse",
+    {
+        "banner_image": fields.String(
+            required=True, description="AWS URI for the dataset banner image."
+        ),
+    },
+)
 
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-    input_banner_image_path = data.get('input_banner_image_path')
 
-    try:
-      return bf_add_banner_image(selected_account, selected_dataset, input_banner_image_path)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
+@api.route("/bf_banner_image")
+class BfBannerImage(Resource):
+    parser_banner_image = reqparse.RequestParser(bundle_errors=True)
+    parser_banner_image.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve the banner image for.",
+    )
+    parser_banner_image.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        location="args",
+        help="The name or id of the dataset to retrieve the banner image for.",
+    )
+
+    @api.marshal_with(model_get_banner_image_response, False, 200)
+    @api.expect(parser_banner_image)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns the AWS URI for the dataset banner image.",
+    )
+    def get(self):
+        data = self.parser_banner_image.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+
+        try:
+            return bf_get_banner_image(selected_account, selected_dataset)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_add_banner_image = parser_banner_image.copy()
+    parser_add_banner_image.add_argument(
+        "input_banner_image_path",
+        type=str,
+        required=True,
+        location="json",
+        help="File path to the local banner image. Will be uploaded to AWS.",
+    )
 
+    @api.marshal_with(successMessage, False, 200)
+    @api.expect(parser_add_banner_image)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            403: "Forbidden",
+        },
+        description="Adds a banner image to the given dataset. The banner image will be uploaded to AWS.",
+    )
+    def put(self):
+        # update the dataset banner image for the selected account and dataset ID
+        data = self.parser_add_banner_image.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        input_banner_image_path = data.get("input_banner_image_path")
+
+        try:
+            return bf_add_banner_image(
+                selected_account, selected_dataset, input_banner_image_path
+            )
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_get_license_response = api.model(
+    "GetLicenseResponse",
+    {
+        "license": fields.String(required=True, description="License for the dataset."),
+    },
+)
 
-model_get_license_response = api.model('GetLicenseResponse', {
-  'license': fields.String(required=True, description="License for the dataset."),
-})
 
 @api.route("/bf_license")
 class BfLicense(Resource):
-  parser_license = reqparse.RequestParser(bundle_errors=True)
-  parser_license.add_argument('selected_account', type=str, required=True, location='args', help='The target account to retrieve the license for.')
-  parser_license.add_argument('selected_dataset', type=str, required=True, location='args', help='The name or id of the dataset to retrieve the license for.')
-
-  @api.marshal_with(model_get_license_response, False, 200)
-  @api.expect(parser_license)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Returns the license for the given dataset.")
-  def get(self):
-    data = self.parser_license.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-
-    try:
-      return bf_get_license(selected_account, selected_dataset)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-  
-  parser_add_license = parser_license.copy()
-  parser_add_license.add_argument('input_license', type=str, required=True, location='json', help='License for the dataset.')
-
-  @api.marshal_with(successMessage, False, 200)
-  @api.expect(parser_add_license)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 403: 'Forbidden'}, description="Adds a license to the given dataset.")
-  def put(self):
-    # update the dataset license for the selected account and dataset ID
-    data = self.parser_add_license.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-    input_license = data.get('input_license')
-
-    try:
-      return bf_add_license(selected_account, selected_dataset, input_license)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
+    parser_license = reqparse.RequestParser(bundle_errors=True)
+    parser_license.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to retrieve the license for.",
+    )
+    parser_license.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        location="args",
+        help="The name or id of the dataset to retrieve the license for.",
+    )
+
+    @api.marshal_with(model_get_license_response, False, 200)
+    @api.expect(parser_license)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Returns the license for the given dataset.",
+    )
+    def get(self):
+        data = self.parser_license.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+
+        try:
+            return bf_get_license(selected_account, selected_dataset)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_add_license = parser_license.copy()
+    parser_add_license.add_argument(
+        "input_license",
+        type=str,
+        required=True,
+        location="json",
+        help="License for the dataset.",
+    )
 
+    @api.marshal_with(successMessage, False, 200)
+    @api.expect(parser_add_license)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            403: "Forbidden",
+        },
+        description="Adds a license to the given dataset.",
+    )
+    def put(self):
+        # update the dataset license for the selected account and dataset ID
+        data = self.parser_add_license.parse_args()
 
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        input_license = data.get("input_license")
 
+        try:
+            return bf_add_license(selected_account, selected_dataset, input_license)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
 
 @api.route("/bf_rename_dataset")
 class BfRenameDataset(Resource):
-  parser_rename_dataset = reqparse.RequestParser(bundle_errors=True)
-  parser_rename_dataset.add_argument('selected_account', type=str, required=True, location='args', help='The target account to rename the dataset for.')
-  parser_rename_dataset.add_argument('selected_dataset', type=str, required=True, location='args', help='The target account to rename the dataset for.')
-  parser_rename_dataset.add_argument('input_new_name', type=str, required=True, location='json', help='The new name for the dataset.')
-
-  @api.expect(parser_rename_dataset)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 403: 'Forbidden', 200: 'OK'}, description="Renames the given dataset.")
-  def put(self):
-    # update the dataset name for the selected account and dataset ID
-    data = self.parser_rename_dataset.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-    input_new_name = data.get('input_new_name')
-
-    try:
-      return bf_rename_dataset(selected_account, selected_dataset, input_new_name)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-
-
-
+    parser_rename_dataset = reqparse.RequestParser(bundle_errors=True)
+    parser_rename_dataset.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to rename the dataset for.",
+    )
+    parser_rename_dataset.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to rename the dataset for.",
+    )
+    parser_rename_dataset.add_argument(
+        "input_new_name",
+        type=str,
+        required=True,
+        location="json",
+        help="The new name for the dataset.",
+    )
+
+    @api.expect(parser_rename_dataset)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            403: "Forbidden",
+            200: "OK",
+        },
+        description="Renames the given dataset.",
+    )
+    def put(self):
+        # update the dataset name for the selected account and dataset ID
+        data = self.parser_rename_dataset.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        input_new_name = data.get("input_new_name")
+
+        try:
+            return bf_rename_dataset(selected_account, selected_dataset, input_new_name)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+
+model_get_username_response = api.model(
+    "GetUsernameResponse",
+    {
+        "username": fields.String(
+            required=True,
+            description="The current SODA user's first and last name stored in the Pennsieve system.",
+        )
+    },
+)
 
-model_get_username_response = api.model("GetUsernameResponse", {
-  'username': fields.String(required=True, description="The current SODA user's first and last name stored in the Pennsieve system.")
-})
 
 @api.route("/account/username")
 class BfGetUsername(Resource):
 
-  parser_get_username = reqparse.RequestParser(bundle_errors=True)
-  parser_get_username.add_argument('selected_account', type=str, required=True, location='args', help='The target account to rename the dataset for.')
-
-  @api.marshal_with(model_get_username_response, 200, False)
-  @api.doc(responses={500: "Internal Server Error", 400: "Bad Request"}, description="Retrieves the current SODA user's first and last name stored in the Pennsieve system.")
-  @api.expect(parser_get_username)
-  def get(self):
-    
-    data = self.parser_get_username.parse_args()
-
-    selected_account = data.get("selected_account")
-
-    try:
-      return get_username(selected_account)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-  
-  parser_add_username = reqparse.RequestParser(bundle_errors=True)
-  parser_add_username.add_argument('keyname', type=str, required=True, location='json', help="Name of the account to be associated with the given credentials.")
-  parser_add_username.add_argument('key', type=str, required=True, location='json', help="The API key the user generated on Pennsieve.")
-  parser_add_username.add_argument('secret', type=str, required=True, location='json', help="The API secret the user generated on Pennsieve.")
-
-
-  @api.expect(parser_add_username)
-  @api.doc(responses={500: "Internal Server Error", 400: "Bad Request", 401: "Unauthenticated", 403: "Forbidden"}, description="Adds account username to the Pennsieve configuration file.")
-  @api.marshal_with(successMessage, 200, False)
-  def put(self):
-
-    data = self.parser_add_username.parse_args()
-
-    keyname = data.get('keyname')
-    key = data.get('key')
-    secret = data.get('secret')
-
-
-    try:
-      return bf_add_account_username(keyname, key, secret)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
+    parser_get_username = reqparse.RequestParser(bundle_errors=True)
+    parser_get_username.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to rename the dataset for.",
+    )
+
+    @api.marshal_with(model_get_username_response, 200, False)
+    @api.doc(
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+        description="Retrieves the current SODA user's first and last name stored in the Pennsieve system.",
+    )
+    @api.expect(parser_get_username)
+    def get(self):
 
+        data = self.parser_get_username.parse_args()
+
+        selected_account = data.get("selected_account")
+
+        try:
+            return get_username(selected_account)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_add_username = reqparse.RequestParser(bundle_errors=True)
+    parser_add_username.add_argument(
+        "keyname",
+        type=str,
+        required=True,
+        location="json",
+        help="Name of the account to be associated with the given credentials.",
+    )
+    parser_add_username.add_argument(
+        "key",
+        type=str,
+        required=True,
+        location="json",
+        help="The API key the user generated on Pennsieve.",
+    )
+    parser_add_username.add_argument(
+        "secret",
+        type=str,
+        required=True,
+        location="json",
+        help="The API secret the user generated on Pennsieve.",
+    )
+
+    @api.expect(parser_add_username)
+    @api.doc(
+        responses={
+            500: "Internal Server Error",
+            400: "Bad Request",
+            401: "Unauthenticated",
+            403: "Forbidden",
+        },
+        description="Adds account username to the Pennsieve configuration file.",
+    )
+    @api.marshal_with(successMessage, 200, False)
+    def put(self):
 
+        data = self.parser_add_username.parse_args()
 
+        keyname = data.get("keyname")
+        key = data.get("key")
+        secret = data.get("secret")
 
+        try:
+            return bf_add_account_username(keyname, key, secret)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
 
 @api.route("/account/api_key")
 class BfAddAccountApiKey(Resource):
 
-  parser_add_api_key = reqparse.RequestParser(bundle_errors=True)
-  parser_add_api_key.add_argument('keyname', type=str, required=True, location='json', help="Name of the account to be associated with the given credentials.")
-  parser_add_api_key.add_argument('key', type=str, required=True, location='json', help="The API key the user generated on Pennsieve.")
-  parser_add_api_key.add_argument('secret', type=str, required=True, location='json', help="The API secret the user generated on Pennsieve.")
-
-  @api.expect(parser_add_api_key)
-  @api.doc(responses={500: "Internal Server Error", 400: "Bad Request", 401: "Unauthenticated", 403: "Forbidden"}, description="Adds account to the Pennsieve configuration file. Used when connecting account to Pennsieve with an API key and secret.")
-  @api.marshal_with(successMessage, 200, False)
-  def put(self):
-
-    data = self.parser_add_api_key.parse_args()
-
-    keyname = data.get('keyname')
-    key = data.get('key')
-    secret = data.get('secret')
-
-    try:
-      return bf_add_account_api_key(keyname, key, secret)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
+    parser_add_api_key = reqparse.RequestParser(bundle_errors=True)
+    parser_add_api_key.add_argument(
+        "keyname",
+        type=str,
+        required=True,
+        location="json",
+        help="Name of the account to be associated with the given credentials.",
+    )
+    parser_add_api_key.add_argument(
+        "key",
+        type=str,
+        required=True,
+        location="json",
+        help="The API key the user generated on Pennsieve.",
+    )
+    parser_add_api_key.add_argument(
+        "secret",
+        type=str,
+        required=True,
+        location="json",
+        help="The API secret the user generated on Pennsieve.",
+    )
+
+    @api.expect(parser_add_api_key)
+    @api.doc(
+        responses={
+            500: "Internal Server Error",
+            400: "Bad Request",
+            401: "Unauthenticated",
+            403: "Forbidden",
+        },
+        description="Adds account to the Pennsieve configuration file. Used when connecting account to Pennsieve with an API key and secret.",
+    )
+    @api.marshal_with(successMessage, 200, False)
+    def put(self):
 
+        data = self.parser_add_api_key.parse_args()
 
+        keyname = data.get("keyname")
+        key = data.get("key")
+        secret = data.get("secret")
 
+        try:
+            return bf_add_account_api_key(keyname, key, secret)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
 
+model_dataset_folder_response = api.model(
+    "DatasetFolderResponse",
+    {
+        "id": fields.String(
+            required=True, description="The ID of the dataset that has been created."
+        )
+    },
+)
 
-model_dataset_folder_response = api.model("DatasetFolderResponse", {
-  'id': fields.String(required=True, description="The ID of the dataset that has been created.")
-})
 
-@api.route('/datasets')
+@api.route("/datasets")
 class BfCreateDatasetFolder(Resource):
-  parser_create_dataset_folder = reqparse.RequestParser(bundle_errors=True)
-  parser_create_dataset_folder.add_argument('selected_account', type=str, required=True, location='args', help='The target account to rename the dataset for.')
-  parser_create_dataset_folder.add_argument('input_dataset_name', type=str, required=True, location='json', help='The name of the dataset to create.')
-
-  @api.expect(parser_create_dataset_folder)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 200: 'OK'}, description="Creates a new dataset on the Pennsieve platform.")
-  @api.marshal_with(model_dataset_folder_response, 200, False)
-  def post(self):
-    # create a new dataset folder for the selected account and dataset ID
-    data = self.parser_create_dataset_folder.parse_args()
-
-    selected_account = data.get('selected_account')
-    dataset_name = data.get('input_dataset_name')
-
-    try:
-      return bf_new_dataset_folder(dataset_name, selected_account)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-  parser_submit_dataset = reqparse.RequestParser(bundle_errors=True)
-  parser_submit_dataset.add_argument('selected_account', type=str, required=True, location='args', help='The target account to rename the dataset for.')
-  parser_submit_dataset.add_argument('selected_dataset', type=str, required=True, location='args', help='The name of the dataset to create.')
-  parser_submit_dataset.add_argument('filepath', type=str, required=True, location='json', help='The local data/dataset folder that will upload to the target dataset.')
-
-  @api.expect(parser_submit_dataset)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 200: 'OK'}, description="Add data to an existing dataset entity on the Pennsieve platform.")
-  def put(self):
-    from pennsieve.api.agent import AgentError
-
-    data = self.parser_submit_dataset.parse_args()
-
-    selected_account = data.get('selected_account')
-    selected_dataset = data.get('selected_dataset')
-    filepath = data.get('filepath')
-
-
-    try:
-      return bf_submit_dataset(selected_account, selected_dataset, filepath)
-    except Exception as e:
-      # TODO: Test this has 'message' property
-      if isinstance(e, AgentError):
-        # for now raise the mysterious AgentError all the way back to the client. 
-        # pretty sure we don't have to do this but I'll have to verify with tests later
-        api.abort(400, str(e))
-      elif notBadRequestException(e): 
-        api.abort(500, str(e))
-      else:
-        raise e
-
-
-
-
-
-
+    parser_create_dataset_folder = reqparse.RequestParser(bundle_errors=True)
+    parser_create_dataset_folder.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to rename the dataset for.",
+    )
+    parser_create_dataset_folder.add_argument(
+        "input_dataset_name",
+        type=str,
+        required=True,
+        location="json",
+        help="The name of the dataset to create.",
+    )
+
+    @api.expect(parser_create_dataset_folder)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            200: "OK",
+        },
+        description="Creates a new dataset on the Pennsieve platform.",
+    )
+    @api.marshal_with(model_dataset_folder_response, 200, False)
+    def post(self):
+        # create a new dataset folder for the selected account and dataset ID
+        data = self.parser_create_dataset_folder.parse_args()
+
+        selected_account = data.get("selected_account")
+        dataset_name = data.get("input_dataset_name")
+
+        try:
+            return bf_new_dataset_folder(dataset_name, selected_account)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_submit_dataset = reqparse.RequestParser(bundle_errors=True)
+    parser_submit_dataset.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to rename the dataset for.",
+    )
+    parser_submit_dataset.add_argument(
+        "selected_dataset",
+        type=str,
+        required=True,
+        location="args",
+        help="The name of the dataset to create.",
+    )
+    parser_submit_dataset.add_argument(
+        "filepath",
+        type=str,
+        required=True,
+        location="json",
+        help="The local data/dataset folder that will upload to the target dataset.",
+    )
+
+    @api.expect(parser_submit_dataset)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            200: "OK",
+        },
+        description="Add data to an existing dataset entity on the Pennsieve platform.",
+    )
+    def put(self):
+        from pennsieve.api.agent import AgentError
+
+        data = self.parser_submit_dataset.parse_args()
+
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        filepath = data.get("filepath")
+
+        try:
+            return bf_submit_dataset(selected_account, selected_dataset, filepath)
+        except Exception as e:
+            # TODO: Test this has 'message' property
+            if isinstance(e, AgentError):
+                # for now raise the mysterious AgentError all the way back to the client.
+                # pretty sure we don't have to do this but I'll have to verify with tests later
+                api.abort(400, str(e))
+            elif notBadRequestException(e):
+                api.abort(500, str(e))
+            else:
+                raise e
+
+
+model_upload_progress_response = api.model(
+    "UploadProgressResponse",
+    {
+        "progress": fields.String(
+            required=True, description="The current progress of the upload."
+        ),
+        "submit_dataset_status": fields.String(
+            required=True, description="The status of the upload."
+        ),
+        "submit_print_status": fields.String(
+            required=True, description="The status of the print."
+        ),
+        "total_file_size": fields.Integer(
+            required=True, description="The total size of the file being uploaded."
+        ),
+        "upload_file_size": fields.Integer(
+            required=True, description="The size of the file being uploaded."
+        ),
+        "elapsed_time_formatted": fields.String(
+            required=True, description="The elapsed time of the upload."
+        ),
+    },
+)
 
-model_upload_progress_response = api.model("UploadProgressResponse", {
-  'progress': fields.String(required=True, description="The current progress of the upload."),
-  'submit_dataset_status': fields.String(required=True, description="The status of the upload."),
-  'submit_print_status': fields.String(required=True, description="The status of the print."),
-  'total_file_size': fields.Integer(required=True, description="The total size of the file being uploaded."),
-  'upload_file_size': fields.Integer(required=True, description="The size of the file being uploaded."),
-  'elapsed_time_formatted': fields.String(required=True, description="The elapsed time of the upload."),
-})
 
-@api.route('/datasets/upload_progress')
+@api.route("/datasets/upload_progress")
 class BfGetUploadProgress(Resource):
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Get the progress of the upload.",
+    )
+    @api.marshal_with(model_upload_progress_response, 200, False)
+    def get(self):
+        try:
+            return submit_dataset_progress()
+        except Exception as e:
+            api.abort(500, str(e))
+
+
+model_upload_details_response = api.model(
+    "UploadDetailsResponse",
+    {
+        "uploaded_files": fields.Integer(
+            required=True, description="The number of files uploaded."
+        ),
+        "uploaded_file_size": fields.Integer(
+            required=True, description="The size of the file being uploaded in bytes."
+        ),
+        "did_fail": fields.Boolean(
+            required=True, description="Whether or not the upload failed."
+        ),
+        "did_upload": fields.Boolean(
+            required=True,
+            description="To inform the user that the upload failed and that it failed after uploading data - important for logging upload sessions",
+        ),
+        "upload_folder_count": fields.Integer(
+            required=True, description="The number of folders that have been uploaded."
+        ),
+    },
+)
 
-  @api.doc(responses={500: 'There was an internal server error'}, description="Get the progress of the upload.")
-  @api.marshal_with(model_upload_progress_response, 200, False)
-  def get(self):
-    try:
-      return submit_dataset_progress()
-    except Exception as e:
-      api.abort(500, str(e))
-
-
-
-
-
-
-
-model_upload_details_response = api.model("UploadDetailsResponse", {
-  'uploaded_files':  fields.Integer(required=True, description="The number of files uploaded."),
-  'uploaded_file_size': fields.Integer(required=True, description="The size of the file being uploaded in bytes."),
-  'did_fail': fields.Boolean(required=True, description="Whether or not the upload failed."),
-  'did_upload': fields.Boolean(required=True, description="To inform the user that the upload failed and that it failed after uploading data - important for logging upload sessions"),
-  'upload_folder_count': fields.Integer(required=True, description="The number of folders that have been uploaded."),
-})
 
-@api.route('/datasets/upload_details')
+@api.route("/datasets/upload_details")
 class BfSubmitDatasetUploadDetails(Resource):
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Get the upload details required for logging the upload session correctly.",
+    )
+    @api.marshal_with(model_upload_details_response, 200, False)
+    def get(self):
+        try:
+            return bf_submit_dataset_upload_details()
+        except Exception as e:
+            api.abort(500, str(e))
+
+
+model_get_readme_response = api.model(
+    "GetReadmeResponse",
+    {
+        "readme": fields.String(
+            required=True, description="The readme for the dataset."
+        ),
+    },
+)
 
 
-  @api.doc(responses={500: 'There was an internal server error'}, description="Get the upload details required for logging the upload session correctly.")
-  @api.marshal_with(model_upload_details_response, 200, False)
-  def get(self):
-    try: 
-      return bf_submit_dataset_upload_details()
-    except Exception as e:
-      api.abort(500, str(e))
-
-
-
-
-
-
-model_get_readme_response = api.model("GetReadmeResponse", {
-  'readme': fields.String(required=True, description="The readme for the dataset."),
-})
-
-@api.route('/datasets/<string:dataset_name_or_id>/readme')
+@api.route("/datasets/<string:dataset_name_or_id>/readme")
 class BfGetDatasetReadme(Resource):
 
+    parser_readme = reqparse.RequestParser(bundle_errors=True)
+    parser_readme.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to rename the dataset for.",
+    )
+    parser_readme.add_argument(
+        "updated_readme",
+        type=str,
+        required=True,
+        location="json",
+        help="The updated readme content to save.",
+    )
+
+    @api.expect(parser_readme)
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            200: "OK",
+        },
+        description="Update the readme for a dataset.",
+    )
+    @api.marshal_with(successMessage, False, 200)
+    def put(self, dataset_name_or_id):
+        data = self.parser_readme.parse_args()
+
+        selected_account = data.get("selected_account")
+        updated_readme = data.get("updated_readme")
+
+        try:
+            return update_dataset_readme(
+                selected_account, dataset_name_or_id, updated_readme
+            )
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
+
+    parser_readme_get = reqparse.RequestParser(bundle_errors=True)
+    parser_readme_get.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The target account to rename the dataset for.",
+    )
+
+    @api.expect(parser_readme_get)
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Get the readme for a dataset.",
+    )
+    @api.marshal_with(model_get_readme_response, False, 200)
+    def get(self, dataset_name_or_id):
+        data = self.parser_readme_get.parse_args()
 
-  parser_readme = reqparse.RequestParser(bundle_errors=True)
-  parser_readme.add_argument('selected_account', type=str, required=True, location='args', help='The target account to rename the dataset for.')
-  parser_readme.add_argument('updated_readme', type=str, required=True, location='json', help='The updated readme content to save.')
-
-  @api.expect(parser_readme)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 200: 'OK'}, description="Update the readme for a dataset.")
-  @api.marshal_with(successMessage, False, 200)
-  def put(self, dataset_name_or_id):
-    data = self.parser_readme.parse_args()
-
-    selected_account = data.get('selected_account')
-    updated_readme = data.get('updated_readme')
-
-    try:
-      return update_dataset_readme(selected_account, dataset_name_or_id , updated_readme)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
-  parser_readme_get = reqparse.RequestParser(bundle_errors=True)
-  parser_readme_get.add_argument('selected_account', type=str, required=True, location='args', help='The target account to rename the dataset for.')
-
-  @api.expect(parser_readme_get)
-  @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Get the readme for a dataset.")
-  @api.marshal_with(model_get_readme_response, False, 200)
-  def get(self, dataset_name_or_id):
-    data = self.parser_readme_get.parse_args()
-
-    selected_account = data.get('selected_account')
-
-    try:
-      return get_dataset_readme(selected_account, dataset_name_or_id)
-    except Exception as e:
-      if notBadRequestException(e):
-        api.abort(500, str(e))
-      raise e
-
-
-
+        selected_account = data.get("selected_account")
 
+        try:
+            return get_dataset_readme(selected_account, dataset_name_or_id)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
 
+model_get_ds_tags = api.model(
+    "GetDsTagsResponse",
+    {
+        "tags": fields.List(
+            fields.String, required=True, description="The tags for the dataset."
+        ),
+    },
+)
 
-model_get_ds_tags = api.model("GetDsTagsResponse", {
-  'tags': fields.List(fields.String, required=True, description="The tags for the dataset."),
-})
 
-@api.route('/datasets/<string:dataset_name_or_id>/tags')
+@api.route("/datasets/<string:dataset_name_or_id>/tags")
 class BfGetDatasetTags(Resource):
-  
+
     parser_tags = reqparse.RequestParser(bundle_errors=True)
-    parser_tags.add_argument('selected_account', type=str, required=True, location='args', help='The account to get dataset tags for.')
+    parser_tags.add_argument(
+        "selected_account",
+        type=str,
+        required=True,
+        location="args",
+        help="The account to get dataset tags for.",
+    )
 
     @api.expect(parser_tags)
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request'}, description="Get the tags for a dataset.")
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad request"},
+        description="Get the tags for a dataset.",
+    )
     @api.marshal_with(model_get_ds_tags, False, 200)
     def get(self, dataset_name_or_id):
-      data = self.parser_tags.parse_args()
-
-      selected_account = data.get('selected_account')
+        data = self.parser_tags.parse_args()
 
-      try:
-        return get_dataset_tags(selected_account, dataset_name_or_id)
-      except Exception as e:
-        if notBadRequestException(e):
-          api.abort(500, str(e))
-        raise e
+        selected_account = data.get("selected_account")
 
-    
+        try:
+            return get_dataset_tags(selected_account, dataset_name_or_id)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
 
     parser_tags_put = parser_tags.copy()
-    parser_tags_put.add_argument('tags', type=list, required=True, location='json', help='The tags to add to the dataset.')
+    parser_tags_put.add_argument(
+        "tags",
+        type=list,
+        required=True,
+        location="json",
+        help="The tags to add to the dataset.",
+    )
 
     @api.expect(parser_tags_put)
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad request', 403: 'Forbidden'}, description="Add tags to a dataset.")
+    @api.doc(
+        responses={
+            500: "There was an internal server error",
+            400: "Bad request",
+            403: "Forbidden",
+        },
+        description="Add tags to a dataset.",
+    )
     @api.marshal_with(successMessage, False, 200)
     def put(self, dataset_name_or_id):
-      data = self.parser_tags_put.parse_args()
-
-      selected_account = data.get('selected_account')
-      tags = data.get('tags')
+        data = self.parser_tags_put.parse_args()
 
-      try:
-        return update_dataset_tags(selected_account, dataset_name_or_id, tags)
-      except Exception as e:
-        if notBadRequestException(e):
-          api.abort(500, str(e))
-        raise e
+        selected_account = data.get("selected_account")
+        tags = data.get("tags")
 
+        try:
+            return update_dataset_tags(selected_account, dataset_name_or_id, tags)
+        except Exception as e:
+            if notBadRequestException(e):
+                api.abort(500, str(e))
+            raise e
diff --git a/pyflask/apis/apiNeuroConv.py b/pyflask/apis/apiNeuroConv.py
index 1584776e0..cbd1d78a5 100644
--- a/pyflask/apis/apiNeuroConv.py
+++ b/pyflask/apis/apiNeuroConv.py
@@ -7,12 +7,16 @@
 api = get_namespace(NamespaceEnum.NEUROCONV)
 
 parser = reqparse.RequestParser()
-parser.add_argument("interfaces", type=str, action="split", help="Interfaces cannot be converted")
+parser.add_argument(
+    "interfaces", type=str, action="split", help="Interfaces cannot be converted"
+)
 
 
 @api.route("/")
 class AllInterfaces(Resource):
-    @api.doc(responses={200: "Success", 400: "Bad Request", 500: "Internal server error"})
+    @api.doc(
+        responses={200: "Success", 400: "Bad Request", 500: "Internal server error"}
+    )
     def get(self):
 
         try:
diff --git a/pyflask/apis/apiOrganizeDatasets.py b/pyflask/apis/apiOrganizeDatasets.py
index 02a8d6c14..4826930d3 100644
--- a/pyflask/apis/apiOrganizeDatasets.py
+++ b/pyflask/apis/apiOrganizeDatasets.py
@@ -3,7 +3,7 @@
     create_soda_json_object_backend,
     monitor_local_json_progress,
     monitor_pennsieve_json_progress,
-    import_pennsieve_dataset
+    import_pennsieve_dataset,
 )
 
 from namespaces import NamespaceEnum, get_namespace
@@ -15,10 +15,6 @@
 api = get_namespace(NamespaceEnum.ORGANIZE_DATASETS)
 
 
-
-
-
-
 # TODO: Return SODA JSON object in model without setting type as string. This causes the client to parse the object as a string.
 # model_get_dataset_files_folders_response = api.model(
 #     "GetDatasetFilesFoldersResponse",
@@ -29,14 +25,18 @@
 #     }
 # )
 
-@api.route('/dataset_files_and_folders')
+
+@api.route("/dataset_files_and_folders")
 class BfGetDatasetFilesFolders(Resource):
-    #parser_file_folders = reqparse.RequestParser(bundle_errors=True)
-    #parser_file_folders.add_argument('sodajsonobject', type=dict, required=True, help='The sodajsonobject filled with the bfaccount and dataset info available.', location="json")
+    # parser_file_folders = reqparse.RequestParser(bundle_errors=True)
+    # parser_file_folders.add_argument('sodajsonobject', type=dict, required=True, help='The sodajsonobject filled with the bfaccount and dataset info available.', location="json")
 
     # @api.expect(parser_file_folders)
-    @api.doc(responses={200: "Success", 400: "Bad Request", 500: "Internal Server Error"}, description="Import a dataset from Pennsieve and populate the local SODA JSON object.")
-    #@api.marshal_with(model_get_dataset_files_folders_response)
+    @api.doc(
+        responses={200: "Success", 400: "Bad Request", 500: "Internal Server Error"},
+        description="Import a dataset from Pennsieve and populate the local SODA JSON object.",
+    )
+    # @api.marshal_with(model_get_dataset_files_folders_response)
     def post(self):
         data = request.get_json()
 
@@ -53,97 +53,165 @@ def post(self):
             raise e
 
 
-
-
-
-
-
-@api.route('/datasets')
+@api.route("/datasets")
 class GenerateDatasetLocally(Resource):
 
     parser_change_dataset_status = reqparse.RequestParser(bundle_errors=True)
-    parser_change_dataset_status.add_argument('generation_type', type=str, required=True, help='The final destination to generate the dataset in. Valid option is create new.', location="json")
-    parser_change_dataset_status.add_argument('generation_destination_path', type=str, required=True, help='The local path to generate the dataset.', location="json")
-    parser_change_dataset_status.add_argument('dataset_name', type=str, required=True, help='The name of the dataset being generated.', location="json")
-    parser_change_dataset_status.add_argument('soda_json_directory_structure', type=dict, required=True, help='The sodajsonobject dataset directory structure.', location="json")
+    parser_change_dataset_status.add_argument(
+        "generation_type",
+        type=str,
+        required=True,
+        help="The final destination to generate the dataset in. Valid option is create new.",
+        location="json",
+    )
+    parser_change_dataset_status.add_argument(
+        "generation_destination_path",
+        type=str,
+        required=True,
+        help="The local path to generate the dataset.",
+        location="json",
+    )
+    parser_change_dataset_status.add_argument(
+        "dataset_name",
+        type=str,
+        required=True,
+        help="The name of the dataset being generated.",
+        location="json",
+    )
+    parser_change_dataset_status.add_argument(
+        "soda_json_directory_structure",
+        type=dict,
+        required=True,
+        help="The sodajsonobject dataset directory structure.",
+        location="json",
+    )
 
     @api.expect(parser_change_dataset_status)
-    @api.doc(responses={200: "Success", 400: "Bad Request", 500: "Internal Server Error"}, description="Generate a dataset at the given local directory using the sodajsonobject dataset directory structure.")
+    @api.doc(
+        responses={200: "Success", 400: "Bad Request", 500: "Internal Server Error"},
+        description="Generate a dataset at the given local directory using the sodajsonobject dataset directory structure.",
+    )
     def post(self):
         data = self.parser_change_dataset_status.parse_args()
 
-        generation_type = data.get('generation_type')
-        generation_destination_path = data.get('generation_destination_path')
-        dataset_name = data.get('dataset_name')
-        soda_json_directory_structure = data.get('soda_json_directory_structure')
-        
+        generation_type = data.get("generation_type")
+        generation_destination_path = data.get("generation_destination_path")
+        dataset_name = data.get("dataset_name")
+        soda_json_directory_structure = data.get("soda_json_directory_structure")
+
         try:
-            return generate_dataset_locally(generation_type, generation_destination_path, dataset_name, soda_json_directory_structure)
+            return generate_dataset_locally(
+                generation_type,
+                generation_destination_path,
+                dataset_name,
+                soda_json_directory_structure,
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
-
-
-
-
-
-@api.route('/datasets/import')
+@api.route("/datasets/import")
 class ImportDataset(Resource):
-    
+
     parser_import_dataset = reqparse.RequestParser(bundle_errors=True)
-    parser_import_dataset.add_argument('sodajsonobject', type=dict, required=True, help='The sodajsonobject filled with the bfaccount and dataset info available.', location="json")
-    parser_import_dataset.add_argument('root_folder_path', type=str, required=True, help='The local path to import the dataset.', location="json")
-    parser_import_dataset.add_argument('irregular_folders', type=list, required=True, help='The name of the dataset being imported.', location="json")    
-    parser_import_dataset.add_argument('replaced', type=list, required=True, help='The name of the dataset being imported.', location="json")
-    
+    parser_import_dataset.add_argument(
+        "sodajsonobject",
+        type=dict,
+        required=True,
+        help="The sodajsonobject filled with the bfaccount and dataset info available.",
+        location="json",
+    )
+    parser_import_dataset.add_argument(
+        "root_folder_path",
+        type=str,
+        required=True,
+        help="The local path to import the dataset.",
+        location="json",
+    )
+    parser_import_dataset.add_argument(
+        "irregular_folders",
+        type=list,
+        required=True,
+        help="The name of the dataset being imported.",
+        location="json",
+    )
+    parser_import_dataset.add_argument(
+        "replaced",
+        type=list,
+        required=True,
+        help="The name of the dataset being imported.",
+        location="json",
+    )
+
     @api.expect(parser_import_dataset)
-    @api.doc(responses={200: "Success", 500: "Internal Server Error"}, description="Import files from local machine into the soda json object.")
+    @api.doc(
+        responses={200: "Success", 500: "Internal Server Error"},
+        description="Import files from local machine into the soda json object.",
+    )
     def post(self):
-        
+
         data = self.parser_import_dataset.parse_args()
 
-        sodajsonobject = data.get('sodajsonobject')
-        root_folder_path = data.get('root_folder_path')
-        irregular_folders = data.get('irregular_folders')
-        replaced = data.get('replaced')
+        sodajsonobject = data.get("sodajsonobject")
+        root_folder_path = data.get("root_folder_path")
+        irregular_folders = data.get("irregular_folders")
+        replaced = data.get("replaced")
 
         try:
-            return create_soda_json_object_backend(sodajsonobject, root_folder_path, irregular_folders, replaced)
+            return create_soda_json_object_backend(
+                sodajsonobject, root_folder_path, irregular_folders, replaced
+            )
         except Exception as e:
             api.abort(500, str(e))
 
 
+model_import_dataset_organize_datasets_progress_response = api.model(
+    "ImportDatasetOrganizeDatasetsProgressResponse",
+    {
+        "create_soda_json_progress": fields.Integer(
+            required=True,
+            description="The progress of the create soda json object operation.",
+        ),
+        "create_soda_json_total_items": fields.Integer(
+            required=True,
+            description="The total number of items to be processed in the create soda json object operation.",
+        ),
+        "progress_percentage": fields.Integer(
+            required=True,
+            description="The percentage of the create soda json object operation completed.",
+        ),
+        "create_soda_json_completed": fields.Integer(
+            required=True,
+            description="Whether the create soda json object operation has completed.",
+        ),
+    },
+)
 
 
-
-
-
-model_import_dataset_organize_datasets_progress_response = api.model("ImportDatasetOrganizeDatasetsProgressResponse", {
-    "create_soda_json_progress": fields.Integer( required=True, description="The progress of the create soda json object operation."),
-    "create_soda_json_total_items": fields.Integer( required=True, description="The total number of items to be processed in the create soda json object operation."),
-    "progress_percentage": fields.Integer( required=True, description="The percentage of the create soda json object operation completed."),
-    "create_soda_json_completed": fields.Integer( required=True, description="Whether the create soda json object operation has completed.")
-})
-
-@api.route('/datasets/import/progress')
+@api.route("/datasets/import/progress")
 class ImportDatasetOrganizeDatasetsProgress(Resource):
     @api.marshal_with(model_import_dataset_organize_datasets_progress_response)
-    @api.doc(responses={200: "Success", 500: "Internal Server Error"}, description="Get the progress of the Organize Datasets import dataset operation.")
+    @api.doc(
+        responses={200: "Success", 500: "Internal Server Error"},
+        description="Get the progress of the Organize Datasets import dataset operation.",
+    )
     def get(self):
-        try: 
+        try:
             return monitor_local_json_progress()
         except Exception as e:
             api.abort(500, str(e))
 
 
-@api.route('/dataset_files_and_folders/progress')
+@api.route("/dataset_files_and_folders/progress")
 class ImportDatasetPennsieveProgress(Resource):
-    @api.doc(responses={200: "Success", 500: "Internal Server Error"}, description="Returns the progress of the current Pennsieve dataset import operation. Used in Organize Datasets.")
+    @api.doc(
+        responses={200: "Success", 500: "Internal Server Error"},
+        description="Returns the progress of the current Pennsieve dataset import operation. Used in Organize Datasets.",
+    )
     def get(self):
-        try: 
+        try:
             return monitor_pennsieve_json_progress()
         except Exception as e:
-            api.abort(500, str(e))
\ No newline at end of file
+            api.abort(500, str(e))
diff --git a/pyflask/apis/apiPrepareMetadata.py b/pyflask/apis/apiPrepareMetadata.py
index edbf84af1..399993005 100644
--- a/pyflask/apis/apiPrepareMetadata.py
+++ b/pyflask/apis/apiPrepareMetadata.py
@@ -13,10 +13,10 @@
     import_bf_RC,
     upload_RC_file,
     delete_manifest_dummy_folders,
-    set_template_path, 
+    set_template_path,
     import_bf_manifest_file,
     manifest_creation_progress,
-    edit_bf_manifest_file
+    edit_bf_manifest_file,
 )
 from flask import request
 import json
@@ -30,62 +30,113 @@
 api = get_namespace(NamespaceEnum.PREPARE_METADATA)
 
 
+model_save_submission_file_response = api.model(
+    "saveSubmissionFileResponse",
+    {
+        "size": fields.Integer(required=True, description="Size of the file in bytes"),
+    },
+)
 
+model_get_submission_file_response = api.model(
+    "getSubmissionFileResponse",
+    {
+        "SPARC Award number": fields.String(
+            required=True, description="SPARC Award number"
+        ),
+        "Milestone achieved": fields.List(
+            fields.String, required=True, description="Milestone achieved"
+        ),
+        "Milestone completion date": fields.String(
+            required=True, description="Milestone completion date"
+        ),
+    },
+)
 
-model_save_submission_file_response = api.model('saveSubmissionFileResponse', {
-    'size': fields.Integer(required=True, description='Size of the file in bytes'),
-})
 
-model_get_submission_file_response = api.model('getSubmissionFileResponse', {
-    "SPARC Award number": fields.String(required=True, description='SPARC Award number'),
-    "Milestone achieved": fields.List(fields.String, required=True, description='Milestone achieved'),
-    "Milestone completion date": fields.String(required=True, description='Milestone completion date'),
-})
-@api.route('/submission_file')
+@api.route("/submission_file")
 class SaveSubmissionFile(Resource):
 
     parser_save_submission_file = reqparse.RequestParser(bundle_errors=True)
-    parser_save_submission_file.add_argument('upload_boolean', type=boolean, help='Boolean to indicate whether to upload the file to the Bionimbus server', location="json", required=True)
-    parser_save_submission_file.add_argument('selected_account', type=str, help='Pennsieve account name', location="args", required=True)
-    parser_save_submission_file.add_argument('selected_dataset', type=str, help='Pennsieve dataset name', location="args", required=True)
-    parser_save_submission_file.add_argument('filepath', type=str, help='Path to the file to be uploaded', location="json")
-    parser_save_submission_file.add_argument('submission_file_rows', type=list, help='List of objects that contain award, milestone, and date properties with appropriate values.', location="json", required=True)
+    parser_save_submission_file.add_argument(
+        "upload_boolean",
+        type=boolean,
+        help="Boolean to indicate whether to upload the file to the Bionimbus server",
+        location="json",
+        required=True,
+    )
+    parser_save_submission_file.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="args",
+        required=True,
+    )
+    parser_save_submission_file.add_argument(
+        "selected_dataset",
+        type=str,
+        help="Pennsieve dataset name",
+        location="args",
+        required=True,
+    )
+    parser_save_submission_file.add_argument(
+        "filepath", type=str, help="Path to the file to be uploaded", location="json"
+    )
+    parser_save_submission_file.add_argument(
+        "submission_file_rows",
+        type=list,
+        help="List of objects that contain award, milestone, and date properties with appropriate values.",
+        location="json",
+        required=True,
+    )
 
     @api.expect(parser_save_submission_file)
-    @api.response(200, 'OK', model_save_submission_file_response)
-    @api.doc(description='Save a submission file locally or in a dataset stored on the Pennsieve account of the current user.', responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"})
+    @api.response(200, "OK", model_save_submission_file_response)
+    @api.doc(
+        description="Save a submission file locally or in a dataset stored on the Pennsieve account of the current user.",
+        responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"},
+    )
     def post(self):
         data = self.parser_save_submission_file.parse_args()
 
-        upload_boolean = data.get('upload_boolean')
-        bfaccount = data.get('selected_account')
-        bfdataset = data.get('selected_dataset')
-        filepath = data.get('filepath')
+        upload_boolean = data.get("upload_boolean")
+        bfaccount = data.get("selected_account")
+        bfdataset = data.get("selected_dataset")
+        filepath = data.get("filepath")
         json_str = data.get("submission_file_rows")
 
-
         if not upload_boolean and filepath is None:
-            api.abort(400, "Please provide a destination in which to save your Submission file.")
+            api.abort(
+                400,
+                "Please provide a destination in which to save your Submission file.",
+            )
 
         try:
-            return save_submission_file(upload_boolean, bfaccount, bfdataset, filepath, json_str)
+            return save_submission_file(
+                upload_boolean, bfaccount, bfdataset, filepath, json_str
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
-
-
     parser_get_submission_file = reqparse.RequestParser(bundle_errors=True)
-    parser_get_submission_file.add_argument('filepath', type=str, help="Path to the submission file on the user's machine", location="args", required=True)
-
+    parser_get_submission_file.add_argument(
+        "filepath",
+        type=str,
+        help="Path to the submission file on the user's machine",
+        location="args",
+        required=True,
+    )
 
     @api.expect(parser_get_submission_file)
     @api.marshal_with(model_get_submission_file_response, 200, False)
-    @api.doc(description='Get the submission file from the user\'s machine.', responses={500: "Internal Server Error", 400: "Bad Request"})
+    @api.doc(
+        description="Get the submission file from the user's machine.",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     def get(self):
         data = self.parser_get_submission_file.parse_args()
-        filepath = data.get('filepath')
+        filepath = data.get("filepath")
 
         try:
             return load_existing_submission_file(filepath)
@@ -95,39 +146,62 @@ def get(self):
             raise e
 
 
+model_upload_RC_file_response = api.model(
+    "uploadRCFileResponse",
+    {
+        "size": fields.Integer(required=True, description="Size of the file in bytes"),
+        "filepath": fields.String(
+            required=True, description="Path to the file on the user's machine"
+        ),
+    },
+)
 
+model_get_RC_file_response = api.model(
+    "getRCFileResponse",
+    {
+        "text": fields.String(required=True, description="Text of the file"),
+    },
+)
 
 
-
-
-model_upload_RC_file_response = api.model('uploadRCFileResponse', {
-    'size': fields.Integer(required=True, description='Size of the file in bytes'),
-    'filepath': fields.String(required=True, description='Path to the file on the user\'s machine'),
-
-})
-
-model_get_RC_file_response = api.model('getRCFileResponse', {
-    'text': fields.String(required=True, description='Text of the file'),
-})
-
-@api.route('/readme_changes_file')
+@api.route("/readme_changes_file")
 class RCFile(Resource):
 
     parser_get_RC_file = reqparse.RequestParser(bundle_errors=True)
-    parser_get_RC_file.add_argument('file_type', type=str, help="Either README or CHANGES from the user\'s Pennsieve account and dataset.", location="args", required=True)
-    parser_get_RC_file.add_argument('selected_account', type=str, help='Pennsieve account name', location="args", required=True)
-    parser_get_RC_file.add_argument('selected_dataset', type=str, help='Pennsieve dataset name', location="args", required=True)
-
+    parser_get_RC_file.add_argument(
+        "file_type",
+        type=str,
+        help="Either README or CHANGES from the user's Pennsieve account and dataset.",
+        location="args",
+        required=True,
+    )
+    parser_get_RC_file.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account name",
+        location="args",
+        required=True,
+    )
+    parser_get_RC_file.add_argument(
+        "selected_dataset",
+        type=str,
+        help="Pennsieve dataset name",
+        location="args",
+        required=True,
+    )
 
     @api.marshal_with(model_get_RC_file_response, 200, False)
     @api.expect(parser_get_RC_file)
-    @api.doc(description='Get the readme or changes file from Pennsieve.', responses={500: "Internal Server Error", 400: "Bad Request"})
+    @api.doc(
+        description="Get the readme or changes file from Pennsieve.",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     def get(self):
         data = self.parser_get_RC_file.parse_args()
 
-        file_type = data.get('file_type')
-        bfaccount = data.get('selected_account')
-        bfdataset = data.get('selected_dataset')
+        file_type = data.get("file_type")
+        bfaccount = data.get("selected_account")
+        bfdataset = data.get("selected_dataset")
 
         try:
             return import_bf_RC(bfaccount, bfdataset, file_type)
@@ -136,21 +210,24 @@ def get(self):
                 api.abort(500, str(e))
             raise e
 
-
     parser_create_RC_file = parser_get_RC_file.copy()
-    parser_create_RC_file.add_argument('text', type=str, help="Text of the file", location="json", required=True)
-
+    parser_create_RC_file.add_argument(
+        "text", type=str, help="Text of the file", location="json", required=True
+    )
 
     @api.expect(parser_create_RC_file)
     @api.marshal_with(model_upload_RC_file_response, 200, False)
-    @api.doc(description='Create a readme or changes file on the given dataset for the given Pennsieve account.', responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"})
+    @api.doc(
+        description="Create a readme or changes file on the given dataset for the given Pennsieve account.",
+        responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"},
+    )
     def post(self):
         data = self.parser_create_RC_file.parse_args()
 
-        file_type = data.get('file_type')
-        bfaccount = data.get('selected_account')
-        bfdataset = data.get('selected_dataset')
-        text = data.get('text')
+        file_type = data.get("file_type")
+        bfaccount = data.get("selected_account")
+        bfdataset = data.get("selected_dataset")
+        text = data.get("text")
 
         try:
             return upload_RC_file(text, file_type, bfaccount, bfdataset)
@@ -158,44 +235,88 @@ def post(self):
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
-    
-
-
-
 
 
+model_list_of_string = api.model(
+    "basicListOfString",
+    {
+        "list_of_string": fields.List(
+            fields.String, required=True, description="List of strings"
+        )
+    },
+)
 
-model_list_of_string = api.model('basicListOfString', {
-    'list_of_string': fields.List(fields.String, required=True, description='List of strings')
-})
+model_get_ds_description_file_response = api.model(
+    "getDSDescriptionFileResponse",
+    {
+        "Basic information": fields.List(
+            fields.List(fields.String, required=True),
+            required=True,
+            description="Basic information",
+        ),
+        "Study information": fields.List(
+            fields.List(fields.String, required=True),
+            required=True,
+            description="Study information",
+        ),
+        "Contributor information": fields.List(
+            fields.List(fields.String, required=True),
+            required=True,
+            description="Contributor information",
+        ),
+        "Award information": fields.List(
+            fields.List(fields.String, required=True),
+            required=True,
+            description="Award information",
+        ),
+        "Related information": fields.List(
+            fields.List(fields.String, required=True),
+            required=True,
+            description="Related information",
+        ),
+    },
+)
 
-model_get_ds_description_file_response = api.model('getDSDescriptionFileResponse', {
-    "Basic information": fields.List(fields.List(fields.String, required=True), required=True, description="Basic information"),
-    "Study information": fields.List(fields.List(fields.String, required=True), required=True, description="Study information"),
-    "Contributor information": fields.List(fields.List(fields.String, required=True), required=True, description="Contributor information"),
-    "Award information": fields.List(fields.List(fields.String, required=True), required=True, description="Award information"),
-    "Related information": fields.List(fields.List(fields.String, required=True), required=True, description="Related information")
-})
+model_save_ds_description_file_response = api.model(
+    "saveDSDescriptionFileResponse",
+    {
+        "size": fields.Integer(
+            required=True, description="Path to the file on the user's machine"
+        ),
+    },
+)
 
-model_save_ds_description_file_response = api.model('saveDSDescriptionFileResponse', {
-    'size': fields.Integer(required=True, description='Path to the file on the user\'s machine'),
-})
 
-@api.route('/dataset_description_file')
+@api.route("/dataset_description_file")
 class DatasetDescriptionFile(Resource):
 
     parser_get_ds_description_file = reqparse.RequestParser(bundle_errors=True)
-    parser_get_ds_description_file.add_argument('filepath', type=str, help="Path to the dataset description file on the user\'s machine or Pennsieve.", location="args", required=True)
-    parser_get_ds_description_file.add_argument('import_type', type=str, help='For this endpoint needs to be local.', location="args", required=True)
+    parser_get_ds_description_file.add_argument(
+        "filepath",
+        type=str,
+        help="Path to the dataset description file on the user's machine or Pennsieve.",
+        location="args",
+        required=True,
+    )
+    parser_get_ds_description_file.add_argument(
+        "import_type",
+        type=str,
+        help="For this endpoint needs to be local.",
+        location="args",
+        required=True,
+    )
 
     @api.expect(parser_get_ds_description_file)
     @api.marshal_with(model_get_ds_description_file_response, 200, False)
-    @api.doc(description='Get the dataset description file from the user\'s machine. A separate route exists for grabbing from Pennsieve.', responses={500: "Internal Server Error", 400: "Bad Request"})
+    @api.doc(
+        description="Get the dataset description file from the user's machine. A separate route exists for grabbing from Pennsieve.",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     def get(self):
         data = self.parser_get_ds_description_file.parse_args()
 
-        filepath = data.get('filepath')
-        import_type = data.get('import_type')
+        filepath = data.get("filepath")
+        import_type = data.get("import_type")
 
         try:
             return load_existing_DD_file(import_type, filepath)
@@ -204,137 +325,241 @@ def get(self):
                 api.abort(500, str(e))
             raise e
 
-    
-
-
-
     parser_dataset_description_file = reqparse.RequestParser(bundle_errors=True)
-    parser_dataset_description_file.add_argument('dataset_str', type=dict, required=True, location="json")
-    parser_dataset_description_file.add_argument('filepath', type=str, location="json")
-    parser_dataset_description_file.add_argument('upload_boolean', type=boolean, required=True, location="args")
-    parser_dataset_description_file.add_argument('selected_account', type=str, location="json")
-    parser_dataset_description_file.add_argument('selected_dataset', type=str, location="json")
-    parser_dataset_description_file.add_argument('study_str', type=dict, required=True, location="json")
-    parser_dataset_description_file.add_argument('contributor_str', type=dict, required=True, location="json")
-    parser_dataset_description_file.add_argument('related_info_str', type=list, required=True, location="json")
-
+    parser_dataset_description_file.add_argument(
+        "dataset_str", type=dict, required=True, location="json"
+    )
+    parser_dataset_description_file.add_argument("filepath", type=str, location="json")
+    parser_dataset_description_file.add_argument(
+        "upload_boolean", type=boolean, required=True, location="args"
+    )
+    parser_dataset_description_file.add_argument(
+        "selected_account", type=str, location="json"
+    )
+    parser_dataset_description_file.add_argument(
+        "selected_dataset", type=str, location="json"
+    )
+    parser_dataset_description_file.add_argument(
+        "study_str", type=dict, required=True, location="json"
+    )
+    parser_dataset_description_file.add_argument(
+        "contributor_str", type=dict, required=True, location="json"
+    )
+    parser_dataset_description_file.add_argument(
+        "related_info_str", type=list, required=True, location="json"
+    )
 
     @api.expect(parser_dataset_description_file)
     @api.marshal_with(model_save_ds_description_file_response, 200, False)
-    @api.doc(description='Save the dataset description file to the user\'s machine. A separate route exists for saving to Pennsieve.', responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"})
+    @api.doc(
+        description="Save the dataset description file to the user's machine. A separate route exists for saving to Pennsieve.",
+        responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"},
+    )
     def post(self):
         data = self.parser_dataset_description_file.parse_args()
 
         print(data)
 
-        dataset_str = data.get('dataset_str')
-        filepath = data.get('filepath')
-        upload_boolean = data.get('upload_boolean')
-        selected_account = data.get('selected_account')
-        selected_dataset = data.get('selected_dataset')
-        study_str = data.get('study_str')
-        contributor_str = data.get('contributor_str')
-        related_info_str = data.get('related_info_str')
+        dataset_str = data.get("dataset_str")
+        filepath = data.get("filepath")
+        upload_boolean = data.get("upload_boolean")
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        study_str = data.get("study_str")
+        contributor_str = data.get("contributor_str")
+        related_info_str = data.get("related_info_str")
 
         if upload_boolean and not selected_account and not selected_dataset:
-            api.abort(400, "Error:  To save a dataset description file on Pennsieve provide a dataset and pennsieve account.")
+            api.abort(
+                400,
+                "Error:  To save a dataset description file on Pennsieve provide a dataset and pennsieve account.",
+            )
 
         if not upload_boolean and not filepath:
-            api.abort(400, "Error:  To save a dataset description file on the user\'s machine provide a filepath.")
+            api.abort(
+                400,
+                "Error:  To save a dataset description file on the user's machine provide a filepath.",
+            )
 
         try:
-            return save_ds_description_file(upload_boolean, selected_account, selected_dataset, filepath, dataset_str, study_str, contributor_str, related_info_str)
+            return save_ds_description_file(
+                upload_boolean,
+                selected_account,
+                selected_dataset,
+                filepath,
+                dataset_str,
+                study_str,
+                contributor_str,
+                related_info_str,
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
-
-
-
-
-@api.route('/code_description_file')
+@api.route("/code_description_file")
 class CodeDescriptionFile(Resource):
 
     parser_upload_code_description_file = reqparse.RequestParser(bundle_errors=True)
-    parser_upload_code_description_file.add_argument('filepath', type=str, help="Path to the code description file on the user\'s machine", location="json", required=True)
-    parser_upload_code_description_file.add_argument('selected_account', type=str, help='Pennsieve account to save the code_description file to', location="json", required=True)
-    parser_upload_code_description_file.add_argument('selected_dataset', type=str, help='Pennsieve dataset to save the code_description file to', location="json", required=True)
+    parser_upload_code_description_file.add_argument(
+        "filepath",
+        type=str,
+        help="Path to the code description file on the user's machine",
+        location="json",
+        required=True,
+    )
+    parser_upload_code_description_file.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account to save the code_description file to",
+        location="json",
+        required=True,
+    )
+    parser_upload_code_description_file.add_argument(
+        "selected_dataset",
+        type=str,
+        help="Pennsieve dataset to save the code_description file to",
+        location="json",
+        required=True,
+    )
 
     @api.expect(parser_upload_code_description_file)
-    @api.doc(description='Upload the code_description file on the user\'s machine directly to Pennsieve', responses={500: "Internal Server Error", 400: "Bad Request"})
-    
+    @api.doc(
+        description="Upload the code_description file on the user's machine directly to Pennsieve",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     def post(self):
         data = self.parser_upload_code_description_file.parse_args()
 
-        filepath = data.get('filepath')
-        selected_account = data.get('selected_account')
-        selected_dataset = data.get('selected_dataset')
+        filepath = data.get("filepath")
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
 
         try:
-            return upload_code_description_metadata(filepath, selected_account, selected_dataset)
+            return upload_code_description_metadata(
+                filepath, selected_account, selected_dataset
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
-
-
-
-
-@api.route('/subjects_file')
+@api.route("/subjects_file")
 class SubjectsFile(Resource):
 
     parser_save_subjects_file = reqparse.RequestParser(bundle_errors=True)
-    parser_save_subjects_file.add_argument('filepath', type=str, help="Path to the subjects file on the user\'s machine.", location="json", required=False)
-    parser_save_subjects_file.add_argument('upload_boolean', type=boolean, help='Save subjecst on Pennsieve if True else save locally.', location="args", required=True)
-    parser_save_subjects_file.add_argument('selected_account', type=str, help='Pennsieve account to save the subjects file to.', location="json", required=False)
-    parser_save_subjects_file.add_argument('selected_dataset', type=str, help='Pennsieve dataset to save the subjects file to.', location="json", required=False)
-    parser_save_subjects_file.add_argument('subjects_header_row', type=list, help='List of subjects to save.', location="json", required=True)
+    parser_save_subjects_file.add_argument(
+        "filepath",
+        type=str,
+        help="Path to the subjects file on the user's machine.",
+        location="json",
+        required=False,
+    )
+    parser_save_subjects_file.add_argument(
+        "upload_boolean",
+        type=boolean,
+        help="Save subjecst on Pennsieve if True else save locally.",
+        location="args",
+        required=True,
+    )
+    parser_save_subjects_file.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account to save the subjects file to.",
+        location="json",
+        required=False,
+    )
+    parser_save_subjects_file.add_argument(
+        "selected_dataset",
+        type=str,
+        help="Pennsieve dataset to save the subjects file to.",
+        location="json",
+        required=False,
+    )
+    parser_save_subjects_file.add_argument(
+        "subjects_header_row",
+        type=list,
+        help="List of subjects to save.",
+        location="json",
+        required=True,
+    )
 
     @api.expect(parser_save_subjects_file)
-    @api.doc(description='Save the subjects file to the user\'s machine or to Pennsieve.', responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"})
+    @api.doc(
+        description="Save the subjects file to the user's machine or to Pennsieve.",
+        responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"},
+    )
     def post(self):
         data = self.parser_save_subjects_file.parse_args()
 
-        filepath = data.get('filepath')
-        upload_boolean = data.get('upload_boolean')
-        selected_account = data.get('selected_account')
-        selected_dataset = data.get('selected_dataset')
-        subjects_str = data.get('subjects_header_row')
+        filepath = data.get("filepath")
+        upload_boolean = data.get("upload_boolean")
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        subjects_str = data.get("subjects_header_row")
 
         if upload_boolean and not selected_account and not selected_dataset:
-            api.abort(400, "To save a subjects file on Pennsieve provide a dataset and pennsieve account.")
+            api.abort(
+                400,
+                "To save a subjects file on Pennsieve provide a dataset and pennsieve account.",
+            )
 
         if not upload_boolean and not filepath:
-            api.abort(400, "To save a subjects file on the user\'s machine provide a filepath.")
-
+            api.abort(
+                400, "To save a subjects file on the user's machine provide a filepath."
+            )
 
         try:
-            return save_subjects_file(upload_boolean, selected_account, selected_dataset, filepath, subjects_str)
+            return save_subjects_file(
+                upload_boolean,
+                selected_account,
+                selected_dataset,
+                filepath,
+                subjects_str,
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
-
     parser_create_data_frames = reqparse.RequestParser(bundle_errors=True)
-    parser_create_data_frames.add_argument('type', type=str, help="Subjects or Samples are the valid types.", location="args", required=True)
-    parser_create_data_frames.add_argument('filepath', type=str, help="Path to the subjects or samples file on the user's machine.", location="args", required=True)
-    parser_create_data_frames.add_argument('ui_fields', type=str, help='The fields to include in the final data frame.', location="args", required=True)
+    parser_create_data_frames.add_argument(
+        "type",
+        type=str,
+        help="Subjects or Samples are the valid types.",
+        location="args",
+        required=True,
+    )
+    parser_create_data_frames.add_argument(
+        "filepath",
+        type=str,
+        help="Path to the subjects or samples file on the user's machine.",
+        location="args",
+        required=True,
+    )
+    parser_create_data_frames.add_argument(
+        "ui_fields",
+        type=str,
+        help="The fields to include in the final data frame.",
+        location="args",
+        required=True,
+    )
 
     @api.expect(parser_create_data_frames)
-    @api.doc(description='Get a local subjects file data in the form of data frames.', responses={500: "Internal Server Error", 400: "Bad Request"})
+    @api.doc(
+        description="Get a local subjects file data in the form of data frames.",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     def get(self):
         data = self.parser_create_data_frames.parse_args()
 
-        file_type = data.get('type')
-        filepath = data.get('filepath')
-        ui_fields = data.get('ui_fields')
+        file_type = data.get("type")
+        filepath = data.get("filepath")
+        ui_fields = data.get("ui_fields")
 
-        if file_type != 'subjects':
+        if file_type != "subjects":
             api.abort(400, "Error: The type parameter must be subjects.")
 
         ui_fields = metadata_string_to_list(ui_fields)
@@ -347,78 +572,154 @@ def get(self):
             raise e
 
 
+model_save_samples_result = api.model(
+    "SaveSamplesResult",
+    {
+        "size": fields.Integer(
+            description="The size of the sample file that was saved through SODA."
+        ),
+    },
+)
 
+model_field_sub_sam_list = api.model(
+    "FieldSubSamList",
+    {
+        "field": fields.List(
+            fields.String, description="Subject or samples field values"
+        ),
+    },
+)
 
+model_get_samples_result = api.model(
+    "GetSamplesResult",
+    {
+        "sample_file_rows": fields.List(
+            fields.List(fields.String, description="A sample file field."),
+            description="A row of sample file fields.",
+        ),
+    },
+)
 
 
-
-model_save_samples_result = api.model('SaveSamplesResult', {
-    'size': fields.Integer(description='The size of the sample file that was saved through SODA.'),
-})
-
-model_field_sub_sam_list = api.model('FieldSubSamList', {
-    'field': fields.List(fields.String, description='Subject or samples field values'),
-})
-
-model_get_samples_result = api.model('GetSamplesResult', {
-    'sample_file_rows': fields.List(fields.List(fields.String, description="A sample file field."), description='A row of sample file fields.'),
-})
-
-@api.route('/samples_file')
+@api.route("/samples_file")
 class SamplesFile(Resource):
-    
+
     parser_save_samples_file = reqparse.RequestParser(bundle_errors=True)
-    parser_save_samples_file.add_argument('filepath', type=str, help="Path to the samples file on the user\'s machine.", location="json", required=False)
-    parser_save_samples_file.add_argument('upload_boolean', type=boolean, help='Save samples on Pennsieve if True else save locally.', location="args", required=True)
-    parser_save_samples_file.add_argument('selected_account', type=str, help='Pennsieve account to save the samples file to.', location="json", required=False)
-    parser_save_samples_file.add_argument('selected_dataset', type=str, help='Pennsieve dataset to save the samples file to.', location="json", required=False)
-    parser_save_samples_file.add_argument('samples_str', type=list, help='List of samples to save.', location="json", required=True)
+    parser_save_samples_file.add_argument(
+        "filepath",
+        type=str,
+        help="Path to the samples file on the user's machine.",
+        location="json",
+        required=False,
+    )
+    parser_save_samples_file.add_argument(
+        "upload_boolean",
+        type=boolean,
+        help="Save samples on Pennsieve if True else save locally.",
+        location="args",
+        required=True,
+    )
+    parser_save_samples_file.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account to save the samples file to.",
+        location="json",
+        required=False,
+    )
+    parser_save_samples_file.add_argument(
+        "selected_dataset",
+        type=str,
+        help="Pennsieve dataset to save the samples file to.",
+        location="json",
+        required=False,
+    )
+    parser_save_samples_file.add_argument(
+        "samples_str",
+        type=list,
+        help="List of samples to save.",
+        location="json",
+        required=True,
+    )
 
     @api.expect(parser_save_samples_file)
-    @api.doc(description='Save the samples file to the user\'s machine or to Pennsieve.', responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"})
+    @api.doc(
+        description="Save the samples file to the user's machine or to Pennsieve.",
+        responses={500: "Internal Server Error", 400: "Bad Request", 403: "Forbidden"},
+    )
     @api.marshal_with(model_save_samples_result, 200, False)
     def post(self):
         data = self.parser_save_samples_file.parse_args()
 
-        filepath = data.get('filepath')
-        upload_boolean = data.get('upload_boolean')
-        selected_account = data.get('selected_account')
-        selected_dataset = data.get('selected_dataset')
-        samples_str = data.get('samples_str')
+        filepath = data.get("filepath")
+        upload_boolean = data.get("upload_boolean")
+        selected_account = data.get("selected_account")
+        selected_dataset = data.get("selected_dataset")
+        samples_str = data.get("samples_str")
 
         if upload_boolean and not selected_account and not selected_dataset:
-            api.abort(400, "Error:  To save a samples file on Pennsieve provide a dataset and pennsieve account.")
-        
+            api.abort(
+                400,
+                "Error:  To save a samples file on Pennsieve provide a dataset and pennsieve account.",
+            )
+
         if not upload_boolean and not filepath:
-            api.abort(400, "Error:  To save a samples file on the user\'s machine provide a filepath.")
+            api.abort(
+                400,
+                "Error:  To save a samples file on the user's machine provide a filepath.",
+            )
 
-        
         try:
-            return save_samples_file(upload_boolean, selected_account, selected_dataset, filepath, samples_str)
+            return save_samples_file(
+                upload_boolean,
+                selected_account,
+                selected_dataset,
+                filepath,
+                samples_str,
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
-    
-    
+
     parser_create_data_frames = reqparse.RequestParser(bundle_errors=True)
-    parser_create_data_frames.add_argument('type', type=str, help="samples.xlsx is the valid metadata type.", location="args", required=True)
-    parser_create_data_frames.add_argument('filepath', type=str, help="Path to the subjects or samples file on the user's machine.", location="args", required=True)
-    parser_create_data_frames.add_argument('ui_fields', type=str, help='The fields to include in the final data frame.', location="args", required=False)
+    parser_create_data_frames.add_argument(
+        "type",
+        type=str,
+        help="samples.xlsx is the valid metadata type.",
+        location="args",
+        required=True,
+    )
+    parser_create_data_frames.add_argument(
+        "filepath",
+        type=str,
+        help="Path to the subjects or samples file on the user's machine.",
+        location="args",
+        required=True,
+    )
+    parser_create_data_frames.add_argument(
+        "ui_fields",
+        type=str,
+        help="The fields to include in the final data frame.",
+        location="args",
+        required=False,
+    )
 
     @api.expect(parser_create_data_frames)
-    @api.doc(description='Get a local samples file data in the form of data frames.', responses={500: "Internal Server Error", 400: "Bad Request"})
+    @api.doc(
+        description="Get a local samples file data in the form of data frames.",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     @api.marshal_with(model_get_samples_result, 200, False)
     def get(self):
         data = self.parser_create_data_frames.parse_args()
 
-        file_type = data.get('type')
-        filepath = data.get('filepath')
-        ui_fields = data.get('ui_fields')
+        file_type = data.get("type")
+        filepath = data.get("filepath")
+        ui_fields = data.get("ui_fields")
 
         print(ui_fields)
 
-        if file_type != 'samples.xlsx':
+        if file_type != "samples.xlsx":
             api.abort(400, "Error: The type parameter must be samples.")
 
         if ui_fields:
@@ -427,7 +728,12 @@ def get(self):
             # more than that the type in Swagger docs is not recognized as a list even when explicitly called one.
             # Rather than deal with that I will just set type=str and use the below workaround
             # that converts the string representation of the list to an actual list.
-            ui_fields = list(map(str.strip, ui_fields.strip('][').replace("'", '').replace('"', '').split(',')))
+            ui_fields = list(
+                map(
+                    str.strip,
+                    ui_fields.strip("][").replace("'", "").replace('"', "").split(","),
+                )
+            )
 
         try:
             return convert_subjects_samples_file_to_df(file_type, filepath, ui_fields)
@@ -437,49 +743,92 @@ def get(self):
             raise e
 
 
-
-
-
 def none_type_validation(*args):
     return all(arg is not None for arg in args)
 
-model_ui_fields = api.model('UIFields', {
-    'ui_fields': fields.List(fields.String, description='For samples and subjects only. Every header from the respective file in list formatting.', required=False),
-})
 
-@api.route('/import_metadata_file')
+model_ui_fields = api.model(
+    "UIFields",
+    {
+        "ui_fields": fields.List(
+            fields.String,
+            description="For samples and subjects only. Every header from the respective file in list formatting.",
+            required=False,
+        ),
+    },
+)
+
+
+@api.route("/import_metadata_file")
 class ImportBFMetadataFile(Resource):
 
     parser_import_metadata_file = reqparse.RequestParser(bundle_errors=True)
-    parser_import_metadata_file.add_argument('selected_account', type=str, help='Pennsieve account to save the metadata file to.', location="args", required=True)
-    parser_import_metadata_file.add_argument('selected_dataset', type=str, help='Pennsieve dataset to save the metadata file to.', location="args", required=True)
-    parser_import_metadata_file.add_argument('file_type', type=str, help="The type of metadata file that we can import from Pennsieve. Must be [subjects.xlsx, samples.xlsx, dataset_description.xlsx, and submission.xlsx]", location="args", required=True)
-    parser_import_metadata_file.add_argument('ui_fields', type=str, help="Path to the metadata file on the user's machine.", location="args", required=False)
-    
+    parser_import_metadata_file.add_argument(
+        "selected_account",
+        type=str,
+        help="Pennsieve account to save the metadata file to.",
+        location="args",
+        required=True,
+    )
+    parser_import_metadata_file.add_argument(
+        "selected_dataset",
+        type=str,
+        help="Pennsieve dataset to save the metadata file to.",
+        location="args",
+        required=True,
+    )
+    parser_import_metadata_file.add_argument(
+        "file_type",
+        type=str,
+        help="The type of metadata file that we can import from Pennsieve. Must be [subjects.xlsx, samples.xlsx, dataset_description.xlsx, and submission.xlsx]",
+        location="args",
+        required=True,
+    )
+    parser_import_metadata_file.add_argument(
+        "ui_fields",
+        type=str,
+        help="Path to the metadata file on the user's machine.",
+        location="args",
+        required=False,
+    )
 
     # @api.expect(parser_import_bf_metadata_file)
-    @api.doc(description='Import a metadata file from Pennsieve. NOTE: CONTRARY TO THE SWAGGER UI THE PAYLOAD IS ONLY REQUIRED FOR SUBJECTS AND SAMPLES FILES.', 
-            responses={500: "Internal Server Error", 400: "Bad Request"}
-            )
+    @api.doc(
+        description="Import a metadata file from Pennsieve. NOTE: CONTRARY TO THE SWAGGER UI THE PAYLOAD IS ONLY REQUIRED FOR SUBJECTS AND SAMPLES FILES.",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     @api.expect(parser_import_metadata_file)
     def get(self):
         args = self.parser_import_metadata_file.parse_args()
 
-        file_type = args.get('file_type')
-        selected_account = args.get('selected_account')
-        selected_dataset = args.get('selected_dataset')
-        ui_fields = args.get('ui_fields')
-
+        file_type = args.get("file_type")
+        selected_account = args.get("selected_account")
+        selected_dataset = args.get("selected_dataset")
+        ui_fields = args.get("ui_fields")
 
         valid = none_type_validation(file_type, selected_account, selected_dataset)
         if not valid:
-            api.abort(400, "Error: To import a metadata file from Pennsieve provide a file_type, selected_account, and selected_dataset.")
-        
-        if file_type not in ['submission.xlsx', 'samples.xlsx', 'subjects.xlsx', 'dataset_description.xlsx']:
-            api.abort(400, "Error: The file_type parameter must be submission.xlsx, samples.xlsx, subjects.xlsx, or dataset_description.xlsx.")
-        
-        if file_type in ['samples.xlsx', 'subjects.xlsx'] and not ui_fields:
-            api.abort(400, "An ui_fields property is required for fetching samples or subjects file types.")
+            api.abort(
+                400,
+                "Error: To import a metadata file from Pennsieve provide a file_type, selected_account, and selected_dataset.",
+            )
+
+        if file_type not in [
+            "submission.xlsx",
+            "samples.xlsx",
+            "subjects.xlsx",
+            "dataset_description.xlsx",
+        ]:
+            api.abort(
+                400,
+                "Error: The file_type parameter must be submission.xlsx, samples.xlsx, subjects.xlsx, or dataset_description.xlsx.",
+            )
+
+        if file_type in ["samples.xlsx", "subjects.xlsx"] and not ui_fields:
+            api.abort(
+                400,
+                "An ui_fields property is required for fetching samples or subjects file types.",
+            )
 
         if ui_fields:
             # a bug in the reqparser library makes any input with location=args and type=list to be parsed character by character.
@@ -487,38 +836,56 @@ def get(self):
             # more than that the type in Swagger docs is not recognized as a list even when explicitly called one.
             # Rather than deal with that I will just set type=str and use the below workaround
             # that converts the string representation of the list to an actual list.
-            ui_fields = list(map(str.strip, ui_fields.strip('][').replace("'", '').replace('"', '').split(',')))
+            ui_fields = list(
+                map(
+                    str.strip,
+                    ui_fields.strip("][").replace("'", "").replace('"', "").split(","),
+                )
+            )
 
         try:
-            return import_bf_metadata_file(file_type, ui_fields, selected_account, selected_dataset)
+            return import_bf_metadata_file(
+                file_type, ui_fields, selected_account, selected_dataset
+            )
         except Exception as e:
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
-
-
-
-
-
-@api.route('/template_paths')
+@api.route("/template_paths")
 class SetTemplatePath(Resource):
 
     parser_set_template_path = reqparse.RequestParser(bundle_errors=True)
-    parser_set_template_path.add_argument('basepath', type=str, help='Path to the template directory', location="json", required=True)
-    parser_set_template_path.add_argument('resourcesPath', type=str, help='Path to the template directory', location="json", required=True)
+    parser_set_template_path.add_argument(
+        "basepath",
+        type=str,
+        help="Path to the template directory",
+        location="json",
+        required=True,
+    )
+    parser_set_template_path.add_argument(
+        "resourcesPath",
+        type=str,
+        help="Path to the template directory",
+        location="json",
+        required=True,
+    )
 
     @api.expect(parser_set_template_path)
-    @api.doc(responses={500: "Internal Server Error", 400: "Bad Request"}, 
-            description="The prepare metadata section of the application requires knowledge of the location of the application once it has been built and executed. This sets that path for the server no matter the OS.")
+    @api.doc(
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+        description="The prepare metadata section of the application requires knowledge of the location of the application once it has been built and executed. This sets that path for the server no matter the OS.",
+    )
     def put(self):
         data = self.parser_set_template_path.parse_args()
-        basepath = data.get('basepath')
-        resourcesPath = data.get('resourcesPath')
+        basepath = data.get("basepath")
+        resourcesPath = data.get("resourcesPath")
 
         if basepath is None and resourcesPath is None:
-            return api.abort(400, "Missing required parameters: basepath, resourcesPath")
+            return api.abort(
+                400, "Missing required parameters: basepath, resourcesPath"
+            )
 
         try:
             return set_template_path(basepath, resourcesPath)
@@ -526,49 +893,57 @@ def put(self):
             api.abort(500, str(e))
 
 
-
-
-
-
-
-@api.route('/import_milestone')
+@api.route("/import_milestone")
 class ImportMilestone(Resource):
     parser_import_milestone = reqparse.RequestParser(bundle_errors=True)
-    parser_import_milestone.add_argument('path', type=str, help='Path to the local data deliverables document', location="args")
+    parser_import_milestone.add_argument(
+        "path",
+        type=str,
+        help="Path to the local data deliverables document",
+        location="args",
+    )
 
     @api.expect(parser_import_milestone)
-    @api.doc(description='Import a milestone from the user\'s machine.', responses={500: "Internal Server Error", 400: "Bad Request"})
+    @api.doc(
+        description="Import a milestone from the user's machine.",
+        responses={500: "Internal Server Error", 400: "Bad Request"},
+    )
     def get(self):
         args = self.parser_import_milestone.parse_args()
-        path = args['path']
+        path = args["path"]
         try:
             data = import_milestone(path)
             return extract_milestone_info(data)
         except Exception as e:
             # check if invalidDataDeliverablesDocument exception
-            if type(e).__name__  == 'InvalidDataDeliverablesDocument':
+            if type(e).__name__ == "InvalidDataDeliverablesDocument":
                 api.abort(400, str(e))
             if notBadRequestException(e):
                 api.abort(500, str(e))
             raise e
 
 
-
-
-
-
-@api.route('/manifest_dummy_folders')
+@api.route("/manifest_dummy_folders")
 class DeleteManifestDummyFolders(Resource):
 
     parser_delete_manifest_dummy_folders = reqparse.RequestParser(bundle_errors=True)
-    parser_delete_manifest_dummy_folders.add_argument('paths', type=list, help='Path to the local data deliverables document', location="json", required=True)
-
-    @api.doc(description='Delete the dummy folders created by the manifest tool.', responses={500: "Internal Server Error", 400: "Bad Request", 200: "OK"})
+    parser_delete_manifest_dummy_folders.add_argument(
+        "paths",
+        type=list,
+        help="Path to the local data deliverables document",
+        location="json",
+        required=True,
+    )
+
+    @api.doc(
+        description="Delete the dummy folders created by the manifest tool.",
+        responses={500: "Internal Server Error", 400: "Bad Request", 200: "OK"},
+    )
     @api.expect(parser_delete_manifest_dummy_folders)
     def delete(self):
         data = self.parser_delete_manifest_dummy_folders.parse_args()
-        
-        paths = data.get('paths')
+
+        paths = data.get("paths")
 
         try:
             return delete_manifest_dummy_folders(paths)
@@ -576,16 +951,17 @@ def delete(self):
             api.abort(500, str(e))
 
 
-
-
-@api.route('/manifest_files/pennsieve')
+@api.route("/manifest_files/pennsieve")
 class GenerateManifestFilesPennsieve(Resource):
-
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request'}, 
-            description="Generate manifest files locally. Used in the standalone manifest file generation feature. Can take edit-manifest keyword that stores the manifest file in a separate directory. Allows ease of editing manifest information for the client.",
-            params={"soda_json_object": "SODA dataset structure", 
-                    "selected_account": "The pennsieve account for the user", 
-                    "selected_dataset": "The dataset that the user wants to generate manifest files for"})
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad Request"},
+        description="Generate manifest files locally. Used in the standalone manifest file generation feature. Can take edit-manifest keyword that stores the manifest file in a separate directory. Allows ease of editing manifest information for the client.",
+        params={
+            "soda_json_object": "SODA dataset structure",
+            "selected_account": "The pennsieve account for the user",
+            "selected_dataset": "The dataset that the user wants to generate manifest files for",
+        },
+    )
     # @api.marshal_with(model_generate_manifest_locally_response, False, 200)
     def post(self):
         data = request.get_json()
@@ -595,16 +971,22 @@ def post(self):
         soda_json_object = data.get("soda_json_object")
 
         if not selected_account or not selected_dataset or not soda_json_object:
-            api.abort(400, "Error: To generate manifest files for Pennsieve provide a selected_account, selected_dataset, and soda_json_object.")
+            api.abort(
+                400,
+                "Error: To generate manifest files for Pennsieve provide a selected_account, selected_dataset, and soda_json_object.",
+            )
 
         try:
-            return import_bf_manifest_file(soda_json_object, selected_account, selected_dataset)
+            return import_bf_manifest_file(
+                soda_json_object, selected_account, selected_dataset
+            )
         except Exception as e:
             api.abort(500, str(e))
 
-
-    @api.doc(responses={500: 'There was an internal server error', 400: 'Bad Request'},
-             description="Edit manifest files that are stored locally. Used in the standalone manifest generator to edit manifest files before uploading to Pennsieve.")
+    @api.doc(
+        responses={500: "There was an internal server error", 400: "Bad Request"},
+        description="Edit manifest files that are stored locally. Used in the standalone manifest generator to edit manifest files before uploading to Pennsieve.",
+    )
     def put(self):
         data = request.get_json()
 
@@ -612,7 +994,9 @@ def put(self):
         manifest_type = data.get("type")
 
         if not edit_action or not manifest_type:
-            api.abort(400, "Cannot edit manifest files without the action and type provided.")
+            api.abort(
+                400, "Cannot edit manifest files without the action and type provided."
+            )
 
         try:
             return edit_bf_manifest_file(edit_action, manifest_type)
@@ -620,20 +1004,31 @@ def put(self):
             api.abort(500, str(e))
 
 
-manifest_creation_progress_model = api.model('ManifestCreationProgress', {
-    'total_manifest_files': fields.Integer(description='Total amount of manifest files that need to be created for the current dataset.'),
-    'manifest_files_uploaded': fields.Integer(description='Total amount of manifest files that have been created for the client.'),
-    'finished': fields.Boolean(description='Whether or not the manifest creation process has finished.')
-})
+manifest_creation_progress_model = api.model(
+    "ManifestCreationProgress",
+    {
+        "total_manifest_files": fields.Integer(
+            description="Total amount of manifest files that need to be created for the current dataset."
+        ),
+        "manifest_files_uploaded": fields.Integer(
+            description="Total amount of manifest files that have been created for the client."
+        ),
+        "finished": fields.Boolean(
+            description="Whether or not the manifest creation process has finished."
+        ),
+    },
+)
+
 
-@api.route('/manifest_files/pennsieve/progress')
+@api.route("/manifest_files/pennsieve/progress")
 class GetManifestFilesPennsieveProgress(Resource):
-    
-        @api.doc(responses={500: 'There was an internal server error'}, 
-                description="Get the progress of the manifest file generation for Pennsieve. This is used to update the progress bar on the client side.")
-        @api.marshal_with(manifest_creation_progress_model, False, 200)
-        def get(self):
-            try:
-                return manifest_creation_progress()
-            except Exception as e:
-                api.abort(500, str(e))
\ No newline at end of file
+    @api.doc(
+        responses={500: "There was an internal server error"},
+        description="Get the progress of the manifest file generation for Pennsieve. This is used to update the progress bar on the client side.",
+    )
+    @api.marshal_with(manifest_creation_progress_model, False, 200)
+    def get(self):
+        try:
+            return manifest_creation_progress()
+        except Exception as e:
+            api.abort(500, str(e))
diff --git a/pyflask/apis/apiStartup.py b/pyflask/apis/apiStartup.py
index aad21d80c..3858f5324 100644
--- a/pyflask/apis/apiStartup.py
+++ b/pyflask/apis/apiStartup.py
@@ -6,7 +6,14 @@
 api = get_namespace(NamespaceEnum.STARTUP)
 
 parser = api.parser()
-parser.add_argument('arg', type=str, required=True, help='Argument that will be echoed back to the caller', location='args')
+parser.add_argument(
+    "arg",
+    type=str,
+    required=True,
+    help="Argument that will be echoed back to the caller",
+    location="args",
+)
+
 
 @api.route("/echo")
 class Echo(Resource):
@@ -19,4 +26,4 @@ def get(self):
 @api.route("/minimum_api_version")
 class MinimumApiVersion(Resource):
     def get(self):
-        return get_api_version()
\ No newline at end of file
+        return get_api_version()
diff --git a/pyflask/apis/apiTaxonomy.py b/pyflask/apis/apiTaxonomy.py
index 81a042796..0d4ec68c8 100644
--- a/pyflask/apis/apiTaxonomy.py
+++ b/pyflask/apis/apiTaxonomy.py
@@ -8,8 +8,11 @@
 
 @api.route("/species")
 class Species(Resource):
-
-    @api.doc(response={200: "Success", 400: "Bad Request", 500: "Internal Server Error"}, description="Get the scientific name for a species", params={"animals_list": "List of animal names"})
+    @api.doc(
+        response={200: "Success", 400: "Bad Request", 500: "Internal Server Error"},
+        description="Get the scientific name for a species",
+        params={"animals_list": "List of animal names"},
+    )
     def get(self):
         data = request.args.to_dict()
 
@@ -21,4 +24,4 @@ def get(self):
         try:
             return load_taxonomy_species(animals_list)
         except Exception as e:
-            api.abort(500, str(e))
\ No newline at end of file
+            api.abort(500, str(e))
diff --git a/pyflask/apis/apiUser.py b/pyflask/apis/apiUser.py
index 865bfed51..49441058b 100644
--- a/pyflask/apis/apiUser.py
+++ b/pyflask/apis/apiUser.py
@@ -8,37 +8,53 @@
 
 @api.route("/orcid")
 class Orcid(Resource):
-  
-      parser = reqparse.RequestParser(bundle_errors=True)
-  
-      parser.add_argument("access_code", type=str, required=True, help="ORCID", location="json")
-      parser.add_argument("pennsieve_account", type=str, required=True, help="Pennsieve account", location="args")
-  
-      @api.expect(parser)
-      @api.doc(response={200: "Success", 400: "Bad Request", 500: "Internal Server Error"}, description="Given an OAuth access code link a user's ORCID ID to their Pennsieve account.This is required in order to publish a dataset for review with the SPARC Consortium.")
-      def post(self):
-          data = self.parser.parse_args()
 
-          access_code = data.get("access_code")
-          pennsieve_account = data.get("pennsieve_account")
+    parser = reqparse.RequestParser(bundle_errors=True)
 
-  
-          try:
-              return integrate_orcid_with_pennsieve(access_code, pennsieve_account)
-          except Exception as e:
-              api.abort(500, str(e))
+    parser.add_argument(
+        "access_code", type=str, required=True, help="ORCID", location="json"
+    )
+    parser.add_argument(
+        "pennsieve_account",
+        type=str,
+        required=True,
+        help="Pennsieve account",
+        location="args",
+    )
 
+    @api.expect(parser)
+    @api.doc(
+        response={200: "Success", 400: "Bad Request", 500: "Internal Server Error"},
+        description="Given an OAuth access code link a user's ORCID ID to their Pennsieve account.This is required in order to publish a dataset for review with the SPARC Consortium.",
+    )
+    def post(self):
+        data = self.parser.parse_args()
 
+        access_code = data.get("access_code")
+        pennsieve_account = data.get("pennsieve_account")
 
+        try:
+            return integrate_orcid_with_pennsieve(access_code, pennsieve_account)
+        except Exception as e:
+            api.abort(500, str(e))
 
 
-@api.route('/')
+@api.route("/")
 class User(Resource):
     parser = reqparse.RequestParser(bundle_errors=True)
-    parser.add_argument("pennsieve_account", type=str, required=True, help="Pennsieve account", location="args")
+    parser.add_argument(
+        "pennsieve_account",
+        type=str,
+        required=True,
+        help="Pennsieve account",
+        location="args",
+    )
 
     @api.expect(parser)
-    @api.doc(response={200: "Success", 400: "Bad Request", 500: "Internal Server Error"}, description="Get a user's information.")
+    @api.doc(
+        response={200: "Success", 400: "Bad Request", 500: "Internal Server Error"},
+        description="Get a user's information.",
+    )
     def get(self):
         data = self.parser.parse_args()
         pennsieve_account = data.get("pennsieve_account")
@@ -47,4 +63,3 @@ def get(self):
             return get_user(pennsieve_account)
         except Exception as e:
             api.abort(500, str(e))
-
diff --git a/pyflask/apis/apiValidator.py b/pyflask/apis/apiValidator.py
index f778b60cc..527d9ff76 100644
--- a/pyflask/apis/apiValidator.py
+++ b/pyflask/apis/apiValidator.py
@@ -3,11 +3,10 @@
 # from validator import val_dataset_local_pipeline, validate_dataset_pipeline
 # from namespaces import get_namespace, NamespaceEnum
 
-# # get the namespace for the validator 
+# # get the namespace for the validator
 # api = get_namespace(NamespaceEnum.VALIDATE_DATASET)
 
 
-
 # parser = api.parser()
 # parser.add_argument('path', type=str, required=True, help='Path to the target local dataset')
 
diff --git a/pyflask/apis/apiVersion.py b/pyflask/apis/apiVersion.py
index d8d0ec4f2..d72e378b1 100644
--- a/pyflask/apis/apiVersion.py
+++ b/pyflask/apis/apiVersion.py
@@ -1,19 +1,21 @@
 from flask_restx import Namespace, Resource, fields
 from minimumApiVersion import get_api_version
 
-api = Namespace('api_version', description='Version of the API')
+api = Namespace("api_version", description="Version of the API")
 
-version = api.model('ApiVersion', {
-    'version': fields.String(required=True, description='Version of the API')
-})
+version = api.model(
+    "ApiVersion",
+    {"version": fields.String(required=True, description="Version of the API")},
+)
 
 
-@api.route('')
+@api.route("")
 class ApiVersion(Resource):
-    @api.marshal_with(version, False, 200,)
-    @api.doc(responses={500: 'There was an internal server error'})
+    @api.marshal_with(
+        version,
+        False,
+        200,
+    )
+    @api.doc(responses={500: "There was an internal server error"})
     def get(self):
         return get_api_version()
-
-
-
diff --git a/pyflask/app.py b/pyflask/app.py
index 28982b3a9..00747887c 100644
--- a/pyflask/app.py
+++ b/pyflask/app.py
@@ -1,6 +1,8 @@
 from __future__ import print_function
+
 # import config
 from flask import Flask, request
+
 # from flask_cors import CORS
 from namespaces import configure_namespaces
 from flask_restx import Resource
@@ -8,7 +10,7 @@
 
 configure_namespaces()
 
-from setupUtils import (configureLogger, configureRouteHandlers, configureAPI)
+from setupUtils import configureLogger, configureRouteHandlers, configureAPI
 
 # import getenv
 from os import getenv
@@ -37,10 +39,9 @@ def get(self):
         func()
 
 
-if __name__ == '__main__':
+if __name__ == "__main__":
     port = sys.argv[1]
     api.logger.info(f"Starting server on port {port}")
     app.run(host="127.0.0.1", port=port)
 
 # app.run(host="127.0.0.1", port='4242')
-
diff --git a/pyflask/authentication/__init__.py b/pyflask/authentication/__init__.py
index 2f187fd24..e3645b9ee 100644
--- a/pyflask/authentication/__init__.py
+++ b/pyflask/authentication/__init__.py
@@ -1 +1 @@
-from .authenticate import get_access_token
\ No newline at end of file
+from .authenticate import get_access_token
diff --git a/pyflask/authentication/authenticate.py b/pyflask/authentication/authenticate.py
index 7c0ae5184..b8d9fe1fb 100644
--- a/pyflask/authentication/authenticate.py
+++ b/pyflask/authentication/authenticate.py
@@ -7,8 +7,9 @@
 configpath = join(userpath, ".pennsieve", "config.ini")
 PENNSIEVE_URL = "https://api.pennsieve.io"
 
+
 def get_access_token():
-    # get cognito config 
+    # get cognito config
     r = requests.get(f"{PENNSIEVE_URL}/authentication/cognito-config")
     r.raise_for_status()
 
@@ -16,27 +17,29 @@ def get_access_token():
     cognito_region_name = r.json()["region"]
 
     cognito_idp_client = boto3.client(
-    "cognito-idp",
-    region_name=cognito_region_name,
-    aws_access_key_id="",
-    aws_secret_access_key="",
+        "cognito-idp",
+        region_name=cognito_region_name,
+        aws_access_key_id="",
+        aws_secret_access_key="",
     )
-            
+
     login_response = cognito_idp_client.initiate_auth(
-    AuthFlow="USER_PASSWORD_AUTH",
-    AuthParameters={"USERNAME": read_from_config("api_token"), "PASSWORD": read_from_config("api_secret")},
-    ClientId=cognito_app_client_id,
+        AuthFlow="USER_PASSWORD_AUTH",
+        AuthParameters={
+            "USERNAME": read_from_config("api_token"),
+            "PASSWORD": read_from_config("api_secret"),
+        },
+        ClientId=cognito_app_client_id,
     )
 
     # write access token to a file
     with open("access_token.txt", "w") as f:
         f.write(login_response["AuthenticationResult"]["AccessToken"])
-        
-    return login_response["AuthenticationResult"]["AccessToken"]
 
+    return login_response["AuthenticationResult"]["AccessToken"]
 
 
-# get a target key's value from the config file 
+# get a target key's value from the config file
 def read_from_config(key):
     config = ConfigParser()
     config.read(configpath)
@@ -47,4 +50,4 @@ def read_from_config(key):
 
     if keyname in config and key in config[keyname]:
         return config[keyname][key]
-    return None
\ No newline at end of file
+    return None
diff --git a/pyflask/collectionsDataset/__init__.py b/pyflask/collectionsDataset/__init__.py
index 34f5b6acd..9ce679906 100644
--- a/pyflask/collectionsDataset/__init__.py
+++ b/pyflask/collectionsDataset/__init__.py
@@ -1,4 +1 @@
-from .collectionsDataset import (
-    get_all_collections,
-    upload_new_names
-)
\ No newline at end of file
+from .collectionsDataset import get_all_collections, upload_new_names
diff --git a/pyflask/collectionsDataset/collectionsDataset.py b/pyflask/collectionsDataset/collectionsDataset.py
index 1b871439e..023ba3258 100644
--- a/pyflask/collectionsDataset/collectionsDataset.py
+++ b/pyflask/collectionsDataset/collectionsDataset.py
@@ -7,7 +7,6 @@
 from utils import get_dataset, get_authenticated_ps
 
 
-
 def get_all_collections(account):
     """
     Function used to get the collections that belong to an organization
@@ -18,7 +17,6 @@ def get_all_collections(account):
     return ps._api._get("/collections/")
 
 
-
 def upload_new_names(account, dataset, tags):
     """
     Function is used to upload new collection tags that are not already on Pennsieve
@@ -31,11 +29,14 @@ def upload_new_names(account, dataset, tags):
     ps = get_authenticated_ps(account)
 
     try:
-        #get dataset and it's id
+        # get dataset and it's id
         myds = get_dataset(ps, dataset)
         role = bf_get_current_user_permission(ps, myds)
         if role not in ["owner", "manager"]:
-            abort(403, "You do not have permission to view/edit DOI for this Pennsieve dataset.")
+            abort(
+                403,
+                "You do not have permission to view/edit DOI for this Pennsieve dataset.",
+            )
 
     except Exception as e:
         abort(400, "Error: Please select a valid Pennsieve dataset")
@@ -46,5 +47,3 @@ def upload_new_names(account, dataset, tags):
         statusResponses.append(result)
 
     return dict({"collection": statusResponses})
-
-    
\ No newline at end of file
diff --git a/pyflask/curate/__init__.py b/pyflask/curate/__init__.py
index 5baf6a187..6362ee67d 100644
--- a/pyflask/curate/__init__.py
+++ b/pyflask/curate/__init__.py
@@ -9,5 +9,5 @@
     create_high_level_manifest_files_existing_local_starting_point,
     create_high_level_manifest_files_existing_bf_starting_point,
     get_name_extension,
-    guided_generate_manifest_file_data
-)
\ No newline at end of file
+    guided_generate_manifest_file_data,
+)
diff --git a/pyflask/curate/curate.py b/pyflask/curate/curate.py
index b9bc2532e..a58c78c2c 100644
--- a/pyflask/curate/curate.py
+++ b/pyflask/curate/curate.py
@@ -747,9 +747,9 @@ def recursive_empty_local_folders_check(
             error_folders = error_message + [] + error_folders
 
         return {
-            "empty_files": error_files, 
-            "empty_folders": error_folders, 
-            "soda_json_structure": soda_json_structure
+            "empty_files": error_files,
+            "empty_folders": error_folders,
+            "soda_json_structure": soda_json_structure,
         }
 
     except Exception as e:
@@ -1000,12 +1000,13 @@ def file_manifest_entry(file_key, file, relative_path, dict_folder_manifest):
 
 def check_JSON_size(jsonStructure):
     """
-        This function is called to check size of files that will be created locally on a user's device.
+    This function is called to check size of files that will be created locally on a user's device.
     """
     global total_dataset_size
     total_dataset_size = 0
 
     try:
+
         def recursive_dataset_scan(folder):
             global total_dataset_size
 
@@ -1112,7 +1113,6 @@ def recursive_dataset_scan(
                                         )
             return list_copy_files, list_move_files
 
-
         namespace_logger.info("generate_dataset_locally step 1")
         # 1. Create new folder for dataset or use existing merge with existing or create new dataset?
         main_curate_progress_message = "Generating folder structure and list of files to be included in the dataset"
@@ -1137,10 +1137,11 @@ def recursive_dataset_scan(
                 folder, folderpath, list_copy_files, list_move_files
             )
 
-        
         # 3. Add high-level metadata files in the list
         if "metadata-files" in soda_json_structure.keys():
-            namespace_logger.info("generate_dataset_locally (optional) step 3 handling metadata-files")
+            namespace_logger.info(
+                "generate_dataset_locally (optional) step 3 handling metadata-files"
+            )
             metadata_files = soda_json_structure["metadata-files"]
             for file_key, file in metadata_files.items():
                 if file["type"] == "local":
@@ -1155,7 +1156,9 @@ def recursive_dataset_scan(
 
         # 4. Add manifest files in the list
         if "manifest-files" in soda_json_structure.keys():
-            namespace_logger.info("generate_dataset_locally (optional) step 4 handling manifest-files")
+            namespace_logger.info(
+                "generate_dataset_locally (optional) step 4 handling manifest-files"
+            )
             main_curate_progress_message = "Preparing manifest files"
             manifest_files_structure = create_high_level_manifest_files(
                 soda_json_structure
@@ -1167,7 +1170,9 @@ def recursive_dataset_scan(
                     main_total_generate_dataset_size += getsize(manifestpath)
                     list_copy_files.append([manifestpath, destination_path])
 
-        namespace_logger.info("generate_dataset_locally step 5 moving files to new location")
+        namespace_logger.info(
+            "generate_dataset_locally step 5 moving files to new location"
+        )
         # 5. Move files to new location
         main_curate_progress_message = "Moving files to new location"
         for fileinfo in list_move_files:
@@ -1178,7 +1183,9 @@ def recursive_dataset_scan(
             )
             mymovefile_with_metadata(srcfile, distfile)
 
-        namespace_logger.info("generate_dataset_locally step 6 copying files to new location")
+        namespace_logger.info(
+            "generate_dataset_locally step 6 copying files to new location"
+        )
         # 6. Copy files to new location
         main_curate_progress_message = "Copying files to new location"
         start_generate = 1
@@ -1192,12 +1199,13 @@ def recursive_dataset_scan(
             mycopyfile_with_metadata(srcfile, distfile)
             main_curation_uploaded_files += 1
 
-       
         namespace_logger.info("generate_dataset_locally step 7")
         # 7. Delete manifest folder and original folder if merge requested and rename new folder
         shutil.rmtree(manifest_folder_path) if isdir(manifest_folder_path) else 0
         if if_existing == "merge":
-            namespace_logger.info("generate_dataset_locally (optional) step 7.1 delete manifest folder if merge requested")
+            namespace_logger.info(
+                "generate_dataset_locally (optional) step 7.1 delete manifest folder if merge requested"
+            )
             main_curate_progress_message = "Finalizing dataset"
             original_dataset_path = join(dataset_absolute_path, dataset_name)
             shutil.rmtree(original_dataset_path)
@@ -1278,6 +1286,7 @@ def bf_create_new_dataset(datasetname, bf):
     ".bcl.gz",
 ]
 
+
 def get_name_extension(file_name):
     double_ext = False
     for ext in double_extensions:
@@ -1300,7 +1309,11 @@ def get_name_extension(file_name):
     return name, ext
 
 
-def create_high_level_manifest_files_existing_bf_starting_point(soda_json_structure, high_level_folders=["code", "derivative", "docs", "primary", "protocol", "source" ], manifest_progress={}):
+def create_high_level_manifest_files_existing_bf_starting_point(
+    soda_json_structure,
+    high_level_folders=["code", "derivative", "docs", "primary", "protocol", "source"],
+    manifest_progress={},
+):
     """
     Function to create manifest files for each high-level SPARC folder for an existing Pennsieve dataset.
     Args:
@@ -1316,7 +1329,9 @@ def create_high_level_manifest_files_existing_bf_starting_point(soda_json_struct
 
     global namespace_logger
 
-    namespace_logger.info("create_high_level_manifest_files_existing_bf_starting_point step 1")
+    namespace_logger.info(
+        "create_high_level_manifest_files_existing_bf_starting_point step 1"
+    )
 
     def recursive_folder_traversal(folder, dict_folder_manifest):
         if "files" in folder.keys():
@@ -1347,7 +1362,11 @@ def recursive_folder_traversal(folder, dict_folder_manifest):
                             local_timezone
                         )
 
-                        tm = lastmodtime.isoformat().replace(".", ",").replace("+00:00", "Z")
+                        tm = (
+                            lastmodtime.isoformat()
+                            .replace(".", ",")
+                            .replace("+00:00", "Z")
+                        )
                         dict_folder_manifest["timestamp"].append(tm)
                 else:
                     dict_folder_manifest["timestamp"].append("")
@@ -1383,7 +1402,7 @@ def recursive_folder_traversal(folder, dict_folder_manifest):
 
     for high_level_folder in list(dataset_structure["folders"]):
 
-        # do not overwrite an existing manifest file 
+        # do not overwrite an existing manifest file
         if high_level_folder not in high_level_folders:
             continue
 
@@ -1408,10 +1427,10 @@ def recursive_folder_traversal(folder, dict_folder_manifest):
         df = pd.DataFrame.from_dict(dict_folder_manifest)
         df.to_excel(manifestfilepath, index=None, header=True)
 
-        # update the progress of manifest file generation 
+        # update the progress of manifest file generation
         if manifest_progress != {}:
             manifest_progress["manifest_files_uploaded"] += 1
-        
+
         # add the path to the manifest into the structure
         manifest_files_structure[high_level_folder] = manifestfilepath
 
@@ -1914,16 +1933,18 @@ def verify_file_name(file_name, extension):
             item_id = item["content"]["id"]
             item_name = item["content"]["name"]
             if item_id[2:9] == "package":
-                if("extension" not in root_children):
-                    file_name_with_extension = verify_file_name(item_name,"")
+                if "extension" not in root_children:
+                    file_name_with_extension = verify_file_name(item_name, "")
                 else:
-                    file_name_with_extension = verify_file_name(item_name, root_children["extension"])
+                    file_name_with_extension = verify_file_name(
+                        item_name, root_children["extension"]
+                    )
 
             if file_name_with_extension == "":
                 continue
             bf_existing_files_name_with_extension.append(file_name_with_extension)
     else:
-        #is collection
+        # is collection
         folder_details = bf._api._get("/packages/" + str(bf_folder.id))
         folder_content = folder_details["children"]
         for item in folder_content:
@@ -1932,15 +1953,16 @@ def verify_file_name(file_name, extension):
             item_id = item["content"]["id"]
             if item_id[2:9] == "package":
                 if "extension" not in folder_content:
-                    file_name_with_extension = verify_file_name(item_name,"")
+                    file_name_with_extension = verify_file_name(item_name, "")
                 else:
-                    file_name_with_extension = verify_file_name(item_name, folder_content["extension"])
+                    file_name_with_extension = verify_file_name(
+                        item_name, folder_content["extension"]
+                    )
             if file_name_with_extension == "":
                 continue
             bf_existing_files_name_with_extension.append(file_name_with_extension)
 
-
-    #OLD FUNCTION
+    # OLD FUNCTION
     # for file in bf_existing_files:
     #     file_name_with_extension = ""
     #     file_id = file.id
@@ -2030,7 +2052,6 @@ def metadata_file_delete(soda_json_structure):
 
         return
 
-
     def recursive_item_path_create(folder, path):
         """
         Recursively create the path for the item    # Add a new key containing the path to all the files and folders on the
@@ -2038,7 +2059,7 @@ def recursive_item_path_create(folder, path):
         Allows us to see if the folder path of a specfic file already
         exists on Pennsieve.
         """
-        
+
         if "files" in folder.keys():
             for item in list(folder["files"]):
                 if "folderpath" not in folder["files"][item]:
@@ -2161,7 +2182,9 @@ def recursive_folder_rename(folder, mode):
         return
 
     # 1. Remove all existing files on Pennsieve, that the user deleted.
-    namespace_logger.info("bf_update_existing_dataset step 1 remove existing files on Pennsieve the user delted")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 1 remove existing files on Pennsieve the user delted"
+    )
     main_curate_progress_message = "Checking Pennsieve for deleted files"
     dataset_structure = soda_json_structure["dataset-structure"]
     recursive_file_delete(dataset_structure)
@@ -2170,21 +2193,27 @@ def recursive_folder_rename(folder, mode):
     )
 
     # 2. Rename any deleted folders on Pennsieve to allow for replacements.
-    namespace_logger.info("bf_update_existing_dataset step 2 rename deleted folders on Pennsieve to allow for replacements")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 2 rename deleted folders on Pennsieve to allow for replacements"
+    )
     main_curate_progress_message = "Checking Pennsieve for deleted folders"
     dataset_structure = soda_json_structure["dataset-structure"]
     recursive_folder_rename(dataset_structure, "deleted")
     main_curate_progress_message = "Folders on Pennsieve have been marked for deletion"
 
     # 2.5 Rename folders that need to be in the final destination.
-    namespace_logger.info("bf_update_existing_dataset step 2.5 rename folders that need to be in the final destination")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 2.5 rename folders that need to be in the final destination"
+    )
     main_curate_progress_message = "Renaming any folders requested by the user"
     recursive_folder_rename(dataset_structure, "renamed")
     main_curate_progress_message = "Renamed all folders requested by the user"
 
     # 3. Get the status of all files currently on Pennsieve and create
     # the folderpath for all items in both dataset structures.
-    namespace_logger.info("bf_update_existing_dataset step 3 get the status of all files currently on Pennsieve and create the folderpath for all items in both dataset structures")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 3 get the status of all files currently on Pennsieve and create the folderpath for all items in both dataset structures"
+    )
     main_curate_progress_message = "Fetching files and folders from Pennsieve"
     current_bf_dataset_files_folders = import_pennsieve_dataset(
         soda_json_structure.copy()
@@ -2197,19 +2226,25 @@ def recursive_folder_rename(folder, mode):
 
     # 4. Move any files that are marked as moved on Pennsieve.
     # Create any additional folders if required
-    namespace_logger.info("bf_update_existing_dataset step 4 move any files that are marked as moved on Pennsieve")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 4 move any files that are marked as moved on Pennsieve"
+    )
     main_curate_progress_message = "Moving any files requested by the user"
     recursive_check_moved_files(dataset_structure)
     main_curate_progress_message = "Moved all files requested by the user"
 
     # 5. Rename any Pennsieve files that are marked as renamed.
-    namespace_logger.info("bf_update_existing_dataset step 5 rename any Pennsieve files that are marked as renamed")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 5 rename any Pennsieve files that are marked as renamed"
+    )
     main_curate_progress_message = "Renaming any files requested by the user"
     recursive_file_rename(dataset_structure)
     main_curate_progress_message = "Renamed all files requested by the user"
 
     # 6. Delete any Pennsieve folders that are marked as deleted.
-    namespace_logger.info("bf_update_existing_dataset step 6 delete any Pennsieve folders that are marked as deleted")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 6 delete any Pennsieve folders that are marked as deleted"
+    )
     main_curate_progress_message = (
         "Deleting any additional folders present on Pennsieve"
     )
@@ -2217,19 +2252,25 @@ def recursive_folder_rename(folder, mode):
     main_curate_progress_message = "Deletion of additional folders complete"
 
     # 7. Rename any Pennsieve folders that are marked as renamed.
-    namespace_logger.info("bf_update_existing_dataset step 7 rename any Pennsieve folders that are marked as renamed")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 7 rename any Pennsieve folders that are marked as renamed"
+    )
     main_curate_progress_message = "Renaming any folders requested by the user"
     recursive_folder_rename(dataset_structure, "renamed")
     main_curate_progress_message = "Renamed all folders requested by the user"
 
     # 8. Delete any metadata files that are marked as deleted.
-    namespace_logger.info("bf_update_existing_dataset step 8 delete any metadata files that are marked as deleted")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 8 delete any metadata files that are marked as deleted"
+    )
     main_curate_progress_message = "Removing any metadata files marked for deletion"
     metadata_file_delete(soda_json_structure)
     main_curate_progress_message = "Removed metadata files marked for deletion"
 
     # 9. Run the original code to upload any new files added to the dataset.
-    namespace_logger.info("bf_update_existing_dataset step 9 run the bf_generate_new_dataset code to upload any new files added to the dataset")
+    namespace_logger.info(
+        "bf_update_existing_dataset step 9 run the bf_generate_new_dataset code to upload any new files added to the dataset"
+    )
     if "manifest-files" in soda_json_structure.keys():
         soda_json_structure["manifest-files"] = {"destination": "bf"}
 
@@ -2320,7 +2361,7 @@ def recursive_dataset_scan_for_bf(
 
             global main_total_generate_dataset_size
 
-            my_bf_folder = my_tracking_folder["value"] #ds (dataset)
+            my_bf_folder = my_tracking_folder["value"]  # ds (dataset)
 
             if "folders" in my_folder.keys():
                 (
@@ -2331,7 +2372,10 @@ def recursive_dataset_scan_for_bf(
                 for folder_key, folder in my_folder["folders"].items():
                     relative_path = generate_relative_path(my_relative_path, folder_key)
 
-                    if existing_folder_option == "skip" and folder_key not in my_tracking_folder["folders"].keys():
+                    if (
+                        existing_folder_option == "skip"
+                        and folder_key not in my_tracking_folder["folders"].keys()
+                    ):
                         continue
 
                     tracking_folder = my_tracking_folder["folders"][folder_key]
@@ -2354,11 +2398,13 @@ def recursive_dataset_scan_for_bf(
                 for file_key, file in my_folder["files"].items():
                     if file["type"] == "local":
                         file_path = file["path"]
-                        if isfile(file_path) and existing_file_option == "replace" and file_key in my_bf_existing_files_name_with_extension:
-                            index_file = (
-                                my_bf_existing_files_name_with_extension.index(
-                                    file_key
-                                )
+                        if (
+                            isfile(file_path)
+                            and existing_file_option == "replace"
+                            and file_key in my_bf_existing_files_name_with_extension
+                        ):
+                            index_file = my_bf_existing_files_name_with_extension.index(
+                                file_key
                             )
                             my_file = my_bf_existing_files[index_file]
                             my_file.delete()
@@ -2389,7 +2435,11 @@ def recursive_dataset_scan_for_bf(
                             desired_name = splitext(file_key)[0]
                             desired_name_extension = splitext(file_key)[1]
                             desired_name_with_extension = file_key
-                            if existing_file_option == "skip" and desired_name_with_extension in my_bf_existing_files_name_with_extension:
+                            if (
+                                existing_file_option == "skip"
+                                and desired_name_with_extension
+                                in my_bf_existing_files_name_with_extension
+                            ):
                                 continue
 
                             # check if initial filename exists on Pennsieve dataset and get the projected name of the file after upload
@@ -2501,7 +2551,9 @@ def recursive_dataset_scan_for_bf(
 
             return list_upload_files
 
-        namespace_logger.info("bf_generate_new_dataset step 1 create non-existent folders")
+        namespace_logger.info(
+            "bf_generate_new_dataset step 1 create non-existent folders"
+        )
         # 1. Scan the dataset structure to create all non-existent folders
         # create a tracking dict which would track the generation of the dataset on Pennsieve
         main_curate_progress_message = "Creating folder structure"
@@ -2513,7 +2565,9 @@ def recursive_dataset_scan_for_bf(
             dataset_structure, tracking_json_structure, existing_folder_option
         )
 
-        namespace_logger.info("bf_generate_new_dataset step 2 create list of files to be uploaded and handle renaming")
+        namespace_logger.info(
+            "bf_generate_new_dataset step 2 create list of files to be uploaded and handle renaming"
+        )
         # 2. Scan the dataset structure and compile a list of files to be uploaded along with desired renaming
         ds.update()
         main_curate_progress_message = "Preparing a list of files to upload"
@@ -2530,13 +2584,14 @@ def recursive_dataset_scan_for_bf(
             relative_path,
         )
 
-        
         # main_curate_progress_message = "About to update after doing recursive dataset scan"
         # 3. Add high-level metadata files to a list
         ds.update()
         list_upload_metadata_files = []
         if "metadata-files" in soda_json_structure.keys():
-            namespace_logger.info("bf_generate_new_dataset (optional) step 3 create high level metadata list")
+            namespace_logger.info(
+                "bf_generate_new_dataset (optional) step 3 create high level metadata list"
+            )
             (
                 my_bf_existing_files,
                 my_bf_existing_files_name,
@@ -2566,7 +2621,9 @@ def recursive_dataset_scan_for_bf(
         # 4. Prepare and add manifest files to a list
         list_upload_manifest_files = []
         if "manifest-files" in soda_json_structure.keys():
-            namespace_logger.info("bf_generate_new_dataset (optional) step 4 create manifest list")
+            namespace_logger.info(
+                "bf_generate_new_dataset (optional) step 4 create manifest list"
+            )
 
             # prepare manifest files
             if soda_json_structure["starting-point"]["type"] == "bf":
@@ -2609,7 +2666,9 @@ def recursive_dataset_scan_for_bf(
                 main_total_generate_dataset_size += getsize(manifestpath)
 
         # 5. Upload files, rename, and add to tracking list
-        namespace_logger.info("bf_generate_new_dataset step 5 upload files, rename and add to tracking list")
+        namespace_logger.info(
+            "bf_generate_new_dataset step 5 upload files, rename and add to tracking list"
+        )
         main_initial_bfdataset_size = bf_dataset_size()
         start_generate = 1
         clear_queue()
@@ -2656,8 +2715,9 @@ def recursive_dataset_scan_for_bf(
                         relative_path
                     )
 
-                    namespace_logger.info(f"bf_generate_new_dataset step 5.1 uploading files to folder {bf_folder.name}")
-
+                    namespace_logger.info(
+                        f"bf_generate_new_dataset step 5.1 uploading files to folder {bf_folder.name}"
+                    )
 
                     current_os = platform.system()
 
@@ -2701,10 +2761,12 @@ def recursive_dataset_scan_for_bf(
                             ]:
                                 if item.name == projected_name:
                                     item.name = final_name
-                                    try: 
+                                    try:
                                         item.update()
                                     except requests.exceptions.HTTPError as e:
-                                        handle_duplicate_package_name_error(e, soda_json_structure)
+                                        handle_duplicate_package_name_error(
+                                            e, soda_json_structure
+                                        )
                                     if "files" not in tracking_folder:
                                         tracking_folder["files"] = {}
                                         tracking_folder["files"][desired_name] = {
@@ -2727,7 +2789,9 @@ def recursive_dataset_scan_for_bf(
                     relative_path
                 )
 
-                namespace_logger.info(f"bf_generate_new_dataset step 5.1 uploading files to folder {bf_folder.name}")
+                namespace_logger.info(
+                    f"bf_generate_new_dataset step 5.1 uploading files to folder {bf_folder.name}"
+                )
 
                 # fails when a single folder has more than 750 files (at which point I'm not sure)
 
@@ -2754,30 +2818,34 @@ def recursive_dataset_scan_for_bf(
                         for item in my_bf_existing_files:
                             if item.name == projected_name:
                                 item.name = final_name
-                                try: 
+                                try:
                                     item.update()
                                 except requests.exceptions.HTTPError as e:
-                                    handle_duplicate_package_name_error(e, soda_json_structure)
-                                   
+                                    handle_duplicate_package_name_error(
+                                        e, soda_json_structure
+                                    )
+
                                 if "files" not in tracking_folder:
                                     tracking_folder["files"] = {}
                                     tracking_folder["files"][desired_name] = {
                                         "value": item
                                     }
 
-
         # 6. Upload metadata files
         if list_upload_metadata_files:
-            namespace_logger.info("bf_generate_new_dataset (optional) step 6 upload metadata files")
+            namespace_logger.info(
+                "bf_generate_new_dataset (optional) step 6 upload metadata files"
+            )
             main_curate_progress_message = (
                 "Uploading metadata files in high-level dataset folder " + str(ds.name)
             )
             ds.upload(*list_upload_metadata_files)
 
-
         # 7. Upload manifest files
         if list_upload_manifest_files:
-            namespace_logger.info("bf_generate_new_dataset (optional) step 7 upload manifest files")
+            namespace_logger.info(
+                "bf_generate_new_dataset (optional) step 7 upload manifest files"
+            )
             for item in list_upload_manifest_files:
                 manifest_file = item[0]
                 bf_folder = item[1]
@@ -2809,13 +2877,20 @@ def recursive_dataset_scan_for_bf(
 
 # TODO: Make sure copying as we do for the local case is fine. I believe it is since there is no freeze. Just make that case wait for the success or fail to log. Get the result from the backend in the fail case.
 def handle_duplicate_package_name_error(e, soda_json_structure):
-    if e.response.text == '{"type":"BadRequest","message":"package name must be unique","code":400}':
+    if (
+        e.response.text
+        == '{"type":"BadRequest","message":"package name must be unique","code":400}'
+    ):
         if "if-existing-files" in soda_json_structure["generate-dataset"]:
-            if soda_json_structure["generate-dataset"]["if-existing-files"] == "create-duplicate":
+            if (
+                soda_json_structure["generate-dataset"]["if-existing-files"]
+                == "create-duplicate"
+            ):
                 return
 
     raise e
 
+
 def bf_check_dataset_files_validity(soda_json_structure, bf):
     """
     Function to check that the bf data files and folders specified in the dataset are valid
@@ -2908,8 +2983,10 @@ def main_curate_function(soda_json_structure):
     global namespace_logger
 
     namespace_logger.info("Starting main_curate_function")
-    namespace_logger.info(f"main_curate_function metadata generate-options={soda_json_structure['generate-dataset']}")
-        
+    namespace_logger.info(
+        f"main_curate_function metadata generate-options={soda_json_structure['generate-dataset']}"
+    )
+
     global main_curate_status
     global main_curate_progress_message
     global main_total_generate_dataset_size
@@ -2953,7 +3030,10 @@ def main_curate_function(soda_json_structure):
     namespace_logger.info("main_curate_function step 1")
 
     # 1.1. Check that the local destination is valid if generate dataset locally is requested
-    if "generate-dataset" in main_keys and soda_json_structure["generate-dataset"]["destination"] == "local":
+    if (
+        "generate-dataset" in main_keys
+        and soda_json_structure["generate-dataset"]["destination"] == "local"
+    ):
         main_curate_progress_message = "Checking that the local destination selected for generating your dataset is valid"
         generate_dataset = soda_json_structure["generate-dataset"]
         local_dataset_path = generate_dataset["path"]
@@ -3002,7 +3082,10 @@ def main_curate_function(soda_json_structure):
         role = bf_get_current_user_permission(bf, myds)
         if role not in ["owner", "manager", "editor"]:
             main_curate_status = "Done"
-            abort(403, "Error: You don't have permissions for uploading to this Pennsieve dataset")
+            abort(
+                403,
+                "Error: You don't have permissions for uploading to this Pennsieve dataset",
+            )
 
     namespace_logger.info("main_curate_function step 1.3")
 
@@ -3017,8 +3100,11 @@ def main_curate_function(soda_json_structure):
                 "dataset-structure" not in soda_json_structure
                 and "metadata-files" not in soda_json_structure
             ):
-                main_curate_status = "Done" 
-                abort(400, "Error: Your dataset is empty. Please add valid files and non-empty folders to your dataset.")
+                main_curate_status = "Done"
+                abort(
+                    400,
+                    "Error: Your dataset is empty. Please add valid files and non-empty folders to your dataset.",
+                )
         except Exception as e:
             main_curate_status = "Done"
             raise e
@@ -3030,9 +3116,15 @@ def main_curate_function(soda_json_structure):
                 abort(400, error)
 
             # check that dataset is not empty after removing all the empty files and folders
-            if not soda_json_structure["dataset-structure"]["folders"] and "metadata-files" not in soda_json_structure:
+            if (
+                not soda_json_structure["dataset-structure"]["folders"]
+                and "metadata-files" not in soda_json_structure
+            ):
                 main_curate_status = "Done"
-                abort(400, "Error: Your dataset is empty. Please add valid files and non-empty folders to your dataset.")
+                abort(
+                    400,
+                    "Error: Your dataset is empty. Please add valid files and non-empty folders to your dataset.",
+                )
 
         except Exception as e:
             main_curate_status = "Done"
@@ -3045,14 +3137,15 @@ def main_curate_function(soda_json_structure):
                     "Checking that the Pennsieve files and folders are valid"
                 )
                 if soda_json_structure["generate-dataset"]["destination"] == "bf":
-                    if error := bf_check_dataset_files_validity(soda_json_structure, bf):
+                    if error := bf_check_dataset_files_validity(
+                        soda_json_structure, bf
+                    ):
                         main_curate_status = "Done"
                         abort(400, error)
             except Exception as e:
                 main_curate_status = "Done"
                 raise e
 
-
     namespace_logger.info("main_curate_function step 3")
 
     # 3] Generate
@@ -3119,9 +3212,7 @@ def main_curate_function_progress():
     elapsed_time_formatted = time_format(elapsed_time)
 
     if start_generate == 1 and main_generate_destination == "bf":
-        main_generated_dataset_size = (
-            bf_dataset_size() - main_initial_bfdataset_size
-        )
+        main_generated_dataset_size = bf_dataset_size() - main_initial_bfdataset_size
 
     return {
         "main_curate_status": main_curate_status,
@@ -3286,9 +3377,6 @@ def copytree(src, dst, symlinks=False, ignore=None):
     return {"success_message_or_manifest_destination": "success"}
 
 
-
-
-
 def guided_generate_manifest_file_data(dataset_structure_obj):
 
     local_timezone = TZLOCAL()
@@ -3337,7 +3425,6 @@ def guided_recursive_folder_traversal(folder, hlf_data_array, ds_struct_path):
                 # The name of the file eg "file.txt"
                 file_name = os.path.basename(local_path_to_file)
                 filename_entry = "/".join(ds_struct_path) + "/" + file_name
-                
 
                 # The extension of the file eg ".txt"
                 file_type_entry = get_name_extension(file_name)
@@ -3345,10 +3432,14 @@ def guided_recursive_folder_traversal(folder, hlf_data_array, ds_struct_path):
                 # The timestamp of the file on the user's local machine
                 file_path = pathlib.Path(local_path_to_file)
                 mtime = file_path.stat().st_mtime
-                last_mod_time = datetime.fromtimestamp(mtime, tz=local_timezone).fromtimestamp(mtime).astimezone(
-                    local_timezone
+                last_mod_time = (
+                    datetime.fromtimestamp(mtime, tz=local_timezone)
+                    .fromtimestamp(mtime)
+                    .astimezone(local_timezone)
+                )
+                timestamp_entry = (
+                    last_mod_time.isoformat().replace(".", ",").replace("+00:00", "Z")
                 )
-                timestamp_entry = last_mod_time.isoformat().replace(".", ",").replace("+00:00", "Z")
 
                 file_manifest_template_data.append(filename_entry)
                 file_manifest_template_data.append(file_type_entry)
@@ -3370,7 +3461,6 @@ def guided_recursive_folder_traversal(folder, hlf_data_array, ds_struct_path):
     # Initialize the array that the manifest data will be added to.
     hlf_manifest_data = {}
 
-
     # Loop through each high level folder and create a manifest data array for each.
     for high_level_folder in list(dataset_structure_obj["folders"]):
         hlf_data_array = []
@@ -3378,14 +3468,20 @@ def guided_recursive_folder_traversal(folder, hlf_data_array, ds_struct_path):
         # create an array to keep track of the path to the obj being recursed over
         relative_structure_path = []
 
-        hlf_data_array.append([
-        "filename",
-        "file type",
-        "timestamp",
-        "description",
-        "Additional Metadata",
-        ])
-        guided_recursive_folder_traversal(dataset_structure_obj["folders"][high_level_folder], hlf_data_array, relative_structure_path)
+        hlf_data_array.append(
+            [
+                "filename",
+                "file type",
+                "timestamp",
+                "description",
+                "Additional Metadata",
+            ]
+        )
+        guided_recursive_folder_traversal(
+            dataset_structure_obj["folders"][high_level_folder],
+            hlf_data_array,
+            relative_structure_path,
+        )
         hlf_manifest_data[high_level_folder] = hlf_data_array
 
     return hlf_manifest_data
diff --git a/pyflask/datasets/__init__.py b/pyflask/datasets/__init__.py
index 78e762e7b..6ce357c11 100644
--- a/pyflask/datasets/__init__.py
+++ b/pyflask/datasets/__init__.py
@@ -1 +1,7 @@
-from .datasets import get_role, get_dataset_by_id, get_current_collection_names, upload_collection_names, remove_collection_names
\ No newline at end of file
+from .datasets import (
+    get_role,
+    get_dataset_by_id,
+    get_current_collection_names,
+    upload_collection_names,
+    remove_collection_names,
+)
diff --git a/pyflask/datasets/datasets.py b/pyflask/datasets/datasets.py
index d1af39879..e5cf50223 100644
--- a/pyflask/datasets/datasets.py
+++ b/pyflask/datasets/datasets.py
@@ -12,41 +12,41 @@
 
 PENNSIEVE_URL = "https://api.pennsieve.io"
 
-def get_role(pennsieve_account, dataset_name_or_id):
-  ps = get_authenticated_ps(pennsieve_account)
-
-  myds = get_dataset(ps, dataset_name_or_id)
-
-  try:
-    role =  ps._api._get(f"/datasets/{myds.id}/role")["role"]
-    return {"role": role}
-  except Exception as e:
-    if type(e).__name__ == "HTTPError":
-      abort(400, e.response.json()["message"])
-    abort(500, "An internal server error prevented the request from being fulfilled. Please try again later.")
-
 
+def get_role(pennsieve_account, dataset_name_or_id):
+    ps = get_authenticated_ps(pennsieve_account)
 
+    myds = get_dataset(ps, dataset_name_or_id)
 
+    try:
+        role = ps._api._get(f"/datasets/{myds.id}/role")["role"]
+        return {"role": role}
+    except Exception as e:
+        if type(e).__name__ == "HTTPError":
+            abort(400, e.response.json()["message"])
+        abort(
+            500,
+            "An internal server error prevented the request from being fulfilled. Please try again later.",
+        )
 
 
 def get_dataset_by_id(dataset_id):
 
-  token = get_access_token()
+    token = get_access_token()
 
-  headers = {
-      "Accept": "*/*",
-      "Content-Type": "application/json",
-      "Authorization": f"Bearer {token}"
-  }
+    headers = {
+        "Accept": "*/*",
+        "Content-Type": "application/json",
+        "Authorization": f"Bearer {token}",
+    }
 
-  r = requests.put(f"{PENNSIEVE_URL}/datasets/{dataset_id}", headers=headers)
+    r = requests.put(f"{PENNSIEVE_URL}/datasets/{dataset_id}", headers=headers)
 
-  # TODO: log r.text and r.status_code
+    # TODO: log r.text and r.status_code
 
-  r.raise_for_status()
+    r.raise_for_status()
 
-  return r.json()
+    return r.json()
 
 
 def get_current_collection_names(account, dataset):
@@ -69,14 +69,15 @@ def upload_collection_names(account, dataset, tags):
     """
     ps = get_authenticated_ps(account)
 
-
     try:
-        #get dataset and it's id
+        # get dataset and it's id
         myds = get_dataset(ps, dataset)
         dataset_id = myds.id
         role = bf_get_current_user_permission(ps, myds)
         if role not in ["owner", "manager"]:
-            abort(403, "You do not have permissions to view/edit DOI for this Pennsieve")
+            abort(
+                403, "You do not have permissions to view/edit DOI for this Pennsieve"
+            )
 
     except Exception as e:
         abort(400, "Error: Please select a valid Pennsieve dataset")
@@ -84,14 +85,14 @@ def upload_collection_names(account, dataset, tags):
     store = []
     for tag in tags:
         jsonfile = {"collectionId": int(tag)}
-        result = ps._api._put(f"/datasets/{dataset_id}/collections" ,json=jsonfile)
+        result = ps._api._put(f"/datasets/{dataset_id}/collections", json=jsonfile)
         for res_object in result:
             # each result will hold the updated collection names/ids
             collection_id = res_object["id"]
             collection_name = res_object["name"]
             if store is None:
                 store = []
-            store.append({'id': collection_id, 'name': str(collection_name)})
+            store.append({"id": collection_id, "name": str(collection_name)})
 
     return {"collection": store}
 
@@ -108,16 +109,19 @@ def remove_collection_names(account, dataset, tags):
     ps = get_authenticated_ps(account)
 
     try:
-        #get dataset and it's id
+        # get dataset and it's id
         myds = get_dataset(ps, dataset)
         dataset_id = myds.id
         role = bf_get_current_user_permission(ps, myds)
         if role not in ["owner", "manager"]:
-            abort(403, "You do not have permissions to view/edit DOI for this Pennsieve dataset")
+            abort(
+                403,
+                "You do not have permissions to view/edit DOI for this Pennsieve dataset",
+            )
 
     except Exception as e:
         abort(400, "Error: Please select a valid Pennsieve dataset")
-    
+
     for tagid in tags:
         result = ps._api._del(f"/datasets/{str(dataset_id)}/collections/{str(tagid)}")
         statusResponses.append(result)
diff --git a/pyflask/disseminate/__init__.py b/pyflask/disseminate/__init__.py
index 21249b195..113fddcac 100644
--- a/pyflask/disseminate/__init__.py
+++ b/pyflask/disseminate/__init__.py
@@ -6,5 +6,5 @@
     bf_withdraw_review_dataset,
     get_files_excluded_from_publishing,
     get_metadata_files,
-    update_files_excluded_from_publishing
-)
\ No newline at end of file
+    update_files_excluded_from_publishing,
+)
diff --git a/pyflask/disseminate/disseminate.py b/pyflask/disseminate/disseminate.py
index 6f1684431..933c54ed3 100644
--- a/pyflask/disseminate/disseminate.py
+++ b/pyflask/disseminate/disseminate.py
@@ -7,7 +7,7 @@
 monkey.patch_all()
 
 from pennsieve import Pennsieve
-from flask import abort 
+from flask import abort
 import requests
 
 from manageDatasets import bf_get_current_user_permission
@@ -39,10 +39,12 @@ def bf_get_doi(selected_bfaccount, selected_bfdataset):
     except Exception as e:
         abort(400, "Please select a valid Pennsieve dataset")
 
-
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager"]:
-        abort(403, "You don't have permissions to view/edit DOI for this Pennsieve dataset")
+        abort(
+            403,
+            "You don't have permissions to view/edit DOI for this Pennsieve dataset",
+        )
 
     try:
         selected_dataset_id = myds.id
@@ -55,9 +57,6 @@ def bf_get_doi(selected_bfaccount, selected_bfdataset):
             raise e
 
 
-
-
-
 def bf_reserve_doi(selected_bfaccount, selected_bfdataset):
     """
     Function to reserve doi for a selected dataset
@@ -81,8 +80,10 @@ def bf_reserve_doi(selected_bfaccount, selected_bfdataset):
 
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager"]:
-        abort(403, "You don't have permissions to view/edit DOI for this Pennsieve dataset")
-
+        abort(
+            403,
+            "You don't have permissions to view/edit DOI for this Pennsieve dataset",
+        )
 
     try:
         res = bf_get_doi(selected_bfaccount, selected_bfdataset)
@@ -98,8 +99,7 @@ def bf_reserve_doi(selected_bfaccount, selected_bfdataset):
         )
 
         creators_list = [
-            item["firstName"] + " " + item["lastName"]
-            for item in contributors_list
+            item["firstName"] + " " + item["lastName"] for item in contributors_list
         ]
 
         jsonfile = {
@@ -112,8 +112,6 @@ def bf_reserve_doi(selected_bfaccount, selected_bfdataset):
         raise e
 
 
-
-
 def bf_get_publishing_status(selected_bfaccount, selected_bfdataset):
     """
     Function to get the review request status and publishing status of a dataset
@@ -138,38 +136,46 @@ def bf_get_publishing_status(selected_bfaccount, selected_bfdataset):
     try:
         selected_dataset_id = myds.id
 
-        review_request_status = bf._api._get(f"/datasets/{str(selected_dataset_id)}")["publication"]["status"]
+        review_request_status = bf._api._get(f"/datasets/{str(selected_dataset_id)}")[
+            "publication"
+        ]["status"]
 
-        publishing_status = bf._api._get(f"/datasets/{str(selected_dataset_id)}/published")["status"]
+        publishing_status = bf._api._get(
+            f"/datasets/{str(selected_dataset_id)}/published"
+        )["status"]
 
-
-        return { 
-            "publishing_status": review_request_status, 
-            "review_request_status": publishing_status
+        return {
+            "publishing_status": review_request_status,
+            "review_request_status": publishing_status,
         }
     except Exception as e:
         raise e
 
 
-
 def construct_publication_qs(publication_type, embargo_release_date):
     """
     Function to construct the publication query string. Used in bf_submit_review_dataset.
     """
-    return f"?publicationType={publication_type}&embargoReleaseDate={embargo_release_date}" if embargo_release_date else f"?publicationType={publication_type}"
+    return (
+        f"?publicationType={publication_type}&embargoReleaseDate={embargo_release_date}"
+        if embargo_release_date
+        else f"?publicationType={publication_type}"
+    )
 
 
-def bf_submit_review_dataset(selected_bfaccount, selected_bfdataset,publication_type, embargo_release_date):
+def bf_submit_review_dataset(
+    selected_bfaccount, selected_bfdataset, publication_type, embargo_release_date
+):
     """
-        Function to publish for a selected dataset
-
-        Args:
-            selected_bfaccount: name of selected Pennsieve acccount (string)
-            selected_bfdataset: name of selected Pennsieve dataset (string)
-            publication_type: type of publication (string)
-            embargo_release_date: (optional) date at which embargo lifts from dataset after publication
-        Return:
-            Success or error message
+    Function to publish for a selected dataset
+
+    Args:
+        selected_bfaccount: name of selected Pennsieve acccount (string)
+        selected_bfdataset: name of selected Pennsieve dataset (string)
+        publication_type: type of publication (string)
+        embargo_release_date: (optional) date at which embargo lifts from dataset after publication
+    Return:
+        Success or error message
     """
 
     ps = get_authenticated_ps(selected_bfaccount)
@@ -192,10 +198,14 @@ def get_publication_type(ps, myds):
     Function to get the publication type of a dataset
     """
 
-     # get the dataset using the id 
+    # get the dataset using the id
     ds = ps._api._get(f"/datasets/{myds.id}")
 
-    publication_type = ds["publication"]["type"] if "publication" in ds and "type" in ds["publication"] else None
+    publication_type = (
+        ds["publication"]["type"]
+        if "publication" in ds and "type" in ds["publication"]
+        else None
+    )
 
     if not publication_type:
         abort(400, "Cannot cancel publication of a dataset that is not published.")
@@ -215,19 +225,22 @@ def bf_withdraw_review_dataset(selected_bfaccount, selected_bfdataset):
         abort(403, "You must be dataset owner to cancel publication.")
 
     publication_type = get_publication_type(ps, myds)
-   
+
     try:
-        ps._api._post(f"/datasets/{myds.id}/publication/cancel?publicationType={publication_type}")
+        ps._api._post(
+            f"/datasets/{myds.id}/publication/cancel?publicationType={publication_type}"
+        )
     except Exception as e:
         if type(e).__name__ == "HTTPError":
             abort(400, e.response.json()["message"])
-        abort(500, "An internal server error prevented the request from being fulfilled. Please try again later.")
+        abort(
+            500,
+            "An internal server error prevented the request from being fulfilled. Please try again later.",
+        )
 
     return {"message": "Your dataset publication has been cancelled."}
 
 
-
-
 def get_files_excluded_from_publishing(selected_dataset, pennsieve_account):
     """
     Function to get the files excluded from publishing
@@ -252,9 +265,9 @@ def get_files_excluded_from_publishing(selected_dataset, pennsieve_account):
     return {"ignore_files": []}
 
 
-
-
-def update_files_excluded_from_publishing(selected_dataset_id, files_excluded_from_publishing):
+def update_files_excluded_from_publishing(
+    selected_dataset_id, files_excluded_from_publishing
+):
     """
     Function to update the files excluded from publishing
 
@@ -271,10 +284,14 @@ def update_files_excluded_from_publishing(selected_dataset_id, files_excluded_fr
     headers = {
         "Accept": "*/*",
         "Content-Type": "application/json",
-        "Authorization": f"Bearer {token}"
+        "Authorization": f"Bearer {token}",
     }
 
-    r = requests.put(f"{PENNSIEVE_URL}/datasets/{selected_dataset_id}/ignore-files", json=files_excluded_from_publishing, headers=headers)
+    r = requests.put(
+        f"{PENNSIEVE_URL}/datasets/{selected_dataset_id}/ignore-files",
+        json=files_excluded_from_publishing,
+        headers=headers,
+    )
 
     # TODO: log r.text and r.status_code
 
@@ -283,20 +300,17 @@ def update_files_excluded_from_publishing(selected_dataset_id, files_excluded_fr
     return {"message": "Files excluded from publishing."}
 
 
-
-
-
 METADATA_FILES = [
-                  "submission.xlsx", 
-                  "code_description.xlsx", 
-                  "dataset_description.xlsx", 
-                  "outputs_metadata.xlsx", 
-                  "inputs_metadata.xlsx", 
-                  "CHANGES.txt", 
-                  "README.txt", 
-                  "samples.xlsx", 
-                  "subjects.xlsx"
-                  ]
+    "submission.xlsx",
+    "code_description.xlsx",
+    "dataset_description.xlsx",
+    "outputs_metadata.xlsx",
+    "inputs_metadata.xlsx",
+    "CHANGES.txt",
+    "README.txt",
+    "samples.xlsx",
+    "subjects.xlsx",
+]
 
 
 def get_metadata_files(selected_dataset, pennsieve_account):
@@ -323,5 +337,11 @@ def get_metadata_files(selected_dataset, pennsieve_account):
 
     # iterate through children check if content property has name property that equals one of the valid metadata file names and return it if so
     return {
-        "metadata_files": [child["content"]["name"] for child in children if "content" in child and "name" in child["content"] and child["content"]["name"] in METADATA_FILES]
+        "metadata_files": [
+            child["content"]["name"]
+            for child in children
+            if "content" in child
+            and "name" in child["content"]
+            and child["content"]["name"] in METADATA_FILES
+        ]
     }
diff --git a/pyflask/errorHandlers/__init__.py b/pyflask/errorHandlers/__init__.py
index d8436b59d..955d51914 100644
--- a/pyflask/errorHandlers/__init__.py
+++ b/pyflask/errorHandlers/__init__.py
@@ -2,4 +2,4 @@
 from .fileNotFound import is_file_not_found_exception
 from .invalidFileException import is_invalid_file_exception
 from .invalidDataDeliverablesDocument import InvalidDeliverablesDocument
-from .handleHTTPError import handle_http_error
\ No newline at end of file
+from .handleHTTPError import handle_http_error
diff --git a/pyflask/errorHandlers/fileNotFound.py b/pyflask/errorHandlers/fileNotFound.py
index 6693c0e11..1efb7a9d5 100644
--- a/pyflask/errorHandlers/fileNotFound.py
+++ b/pyflask/errorHandlers/fileNotFound.py
@@ -2,4 +2,4 @@ def is_file_not_found_exception(e):
     """
     Checks if the exception is a FileNotFoundException.
     """
-    return isinstance(e, FileNotFoundError) 
\ No newline at end of file
+    return isinstance(e, FileNotFoundError)
diff --git a/pyflask/errorHandlers/handleHTTPError.py b/pyflask/errorHandlers/handleHTTPError.py
index c73fd8c59..865a7c05f 100644
--- a/pyflask/errorHandlers/handleHTTPError.py
+++ b/pyflask/errorHandlers/handleHTTPError.py
@@ -2,9 +2,9 @@
 
 
 def handle_http_error(e):
-    prefix, suffix = get_prefix_suffix(e)    
+    prefix, suffix = get_prefix_suffix(e)
 
-    if "400" in prefix:    
+    if "400" in prefix:
         abort(400, suffix)
     if "401" in prefix:
         abort(401, suffix)
@@ -12,7 +12,10 @@ def handle_http_error(e):
         abort(403, suffix)
     if "404" in prefix:
         abort(404, suffix)
-    abort(500, "Something went wrong while processing your request. Please try again later.")
+    abort(
+        500,
+        "Something went wrong while processing your request. Please try again later.",
+    )
 
 
 def get_prefix_suffix(e):
@@ -21,6 +24,6 @@ def get_prefix_suffix(e):
     """
     split_err = str(e).split(":")
     prefix = split_err[0]
-    suffix = ''.join(split_err[1:]).strip()
+    suffix = "".join(split_err[1:]).strip()
 
-    return prefix, suffix
\ No newline at end of file
+    return prefix, suffix
diff --git a/pyflask/errorHandlers/handlePennsieveError.py b/pyflask/errorHandlers/handlePennsieveError.py
index 25bdc098e..c5678dc11 100644
--- a/pyflask/errorHandlers/handlePennsieveError.py
+++ b/pyflask/errorHandlers/handlePennsieveError.py
@@ -3,9 +3,12 @@
 
 def handle_http_error(e):
     """
-        Pennsieve errors are spawned from the requests library. Handling them is cumbersome so it is placed in this function.
+    Pennsieve errors are spawned from the requests library. Handling them is cumbersome so it is placed in this function.
     """
     if type(e).__name__ == "HTTPError":
         abort(400, e.response.json()["message"])
-    
-    abort(500, "An internal server error prevented the request from being fulfilled. Please try again later.")
\ No newline at end of file
+
+    abort(
+        500,
+        "An internal server error prevented the request from being fulfilled. Please try again later.",
+    )
diff --git a/pyflask/errorHandlers/invalidDataDeliverablesDocument.py b/pyflask/errorHandlers/invalidDataDeliverablesDocument.py
index fbf6f8405..da80da758 100644
--- a/pyflask/errorHandlers/invalidDataDeliverablesDocument.py
+++ b/pyflask/errorHandlers/invalidDataDeliverablesDocument.py
@@ -1,3 +1,3 @@
 # custom Exception class for when a DDD file is in an invalid form
 class InvalidDeliverablesDocument(Exception):
-    pass
\ No newline at end of file
+    pass
diff --git a/pyflask/errorHandlers/invalidFileException.py b/pyflask/errorHandlers/invalidFileException.py
index a267fa86b..00350f4cb 100644
--- a/pyflask/errorHandlers/invalidFileException.py
+++ b/pyflask/errorHandlers/invalidFileException.py
@@ -1,4 +1,5 @@
 from openpyxl.utils.exceptions import InvalidFileException
 
+
 def is_invalid_file_exception(e):
-    return isinstance(e, InvalidFileException)
\ No newline at end of file
+    return isinstance(e, InvalidFileException)
diff --git a/pyflask/errorHandlers/notBadRequestException.py b/pyflask/errorHandlers/notBadRequestException.py
index cd1b3abbf..c0f002952 100644
--- a/pyflask/errorHandlers/notBadRequestException.py
+++ b/pyflask/errorHandlers/notBadRequestException.py
@@ -2,5 +2,4 @@ def notBadRequestException(exception):
     """
     Check if the exception is a generic exception.
     """
-    return type(exception).__name__ not in ['BadRequest', 'Forbidden', 'Unauthorized']
-
+    return type(exception).__name__ not in ["BadRequest", "Forbidden", "Unauthorized"]
diff --git a/pyflask/manageDatasets/__init__.py b/pyflask/manageDatasets/__init__.py
index ff45298a8..a2cc1e152 100644
--- a/pyflask/manageDatasets/__init__.py
+++ b/pyflask/manageDatasets/__init__.py
@@ -1,5 +1,5 @@
 from .manage_datasets import (
-    get_pennsieve_api_key_secret, 
+    get_pennsieve_api_key_secret,
     get_number_of_files_and_folders_locally,
     submit_dataset_progress,
     bf_add_account_api_key,
@@ -35,5 +35,5 @@
     get_dataset_readme,
     get_dataset_tags,
     update_dataset_tags,
-    scale_image
-)
\ No newline at end of file
+    scale_image,
+)
diff --git a/pyflask/manageDatasets/manage_datasets.py b/pyflask/manageDatasets/manage_datasets.py
index e0ba92c59..64b8dd91b 100644
--- a/pyflask/manageDatasets/manage_datasets.py
+++ b/pyflask/manageDatasets/manage_datasets.py
@@ -7,14 +7,7 @@
 monkey.patch_all()
 import os
 from os import listdir, mkdir, walk
-from os.path import (
-    isdir,
-    join,
-    exists,
-    expanduser,
-    dirname,
-    getsize
-)
+from os.path import isdir, join, exists, expanduser, dirname, getsize
 import time
 import shutil
 from configparser import ConfigParser
@@ -42,7 +35,7 @@
 import boto3
 import requests
 
-from flask import abort 
+from flask import abort
 from namespaces import NamespaceEnum, get_namespace_logger
 from utils import get_dataset, get_authenticated_ps
 
@@ -213,9 +206,7 @@ def bf_add_account_api_key(keyname, key, secret):
 
     except Exception:
         bf_delete_account(keyname)
-        abort(401, 
-            "Please check that key name, key, and secret are entered properly"
-        )
+        abort(401, "Please check that key name, key, and secret are entered properly")
 
     # Check that the Pennsieve account is in the SPARC Organization
     try:
@@ -223,8 +214,8 @@ def bf_add_account_api_key(keyname, key, secret):
 
         # CHANGE BACK
         if org_id != "N:organization:618e8dd9-f8d2-4dc4-9abb-c6aaab2e78a0":
-            abort(403,
-                "Please check that your account is within the SPARC Organization"
+            abort(
+                403, "Please check that your account is within the SPARC Organization"
             )
 
         if not config.has_section("global"):
@@ -300,16 +291,12 @@ def bf_add_account_username(keyname, key, secret):
         bf = Pennsieve(temp_keyname)
     except Exception:
         bf_delete_account(temp_keyname)
-        abort(401, 
-            "Please check that key name, key, and secret are entered properly"
-        )
+        abort(401, "Please check that key name, key, and secret are entered properly")
 
     # Check that the Pennsieve account is in the SPARC organization
     if bf.context.id != "N:organization:618e8dd9-f8d2-4dc4-9abb-c6aaab2e78a0":
         bf_delete_account(temp_keyname)
-        abort(403,
-            "Please check that your account is within the SPARC Organization"
-        )
+        abort(403, "Please check that your account is within the SPARC Organization")
 
     try:
         if not config.has_section("global"):
@@ -477,7 +464,7 @@ def bf_dataset_account(accountname):
         bf = Pennsieve(accountname)
     except Exception as e:
         abort(400, str(e))
-    
+
     # bfaccountname = bf.profile.id
     datasets_list = bf.datasets()
     # all_bf_datasets = []
@@ -487,7 +474,9 @@ def filter_dataset(datasets_list, store=None):
             store = []
         for dataset in datasets_list:
             selected_dataset_id = dataset.id
-            user_role = bf._api._get(f"/datasets/{str(selected_dataset_id)}/role")["role"]
+            user_role = bf._api._get(f"/datasets/{str(selected_dataset_id)}/role")[
+                "role"
+            ]
             if user_role not in ["viewer", "editor"]:
                 store.append(
                     {"id": selected_dataset_id, "name": dataset.name, "role": user_role}
@@ -524,7 +513,7 @@ def get_username(accountname):
         bf = Pennsieve(accountname)
     except Exception as e:
         abort(400, "Please select a valid Pennsieve account.")
-    
+
     bfname = f"{bf.profile.first_name} {bf.profile.last_name}"
 
     return {"username": bfname}
@@ -547,7 +536,7 @@ def bf_account_details(accountname):
     acc_details = f"User email: {bf.profile.email}<br>"
     acc_details = f"{acc_details}Organization: {bf.context.name}"
 
-    try: 
+    try:
         if exists(configpath):
             config = ConfigParser()
             config.read(configpath)
@@ -666,10 +655,11 @@ def bf_rename_dataset(accountname, current_dataset_name, renamed_dataset_name):
 
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager"]:
-        error_message = "You don't have permissions to change the name of this Pennsieve dataset"
+        error_message = (
+            "You don't have permissions to change the name of this Pennsieve dataset"
+        )
         abort(403, error_message)
 
-
     dataset_list = [ds.name for ds in bf.datasets()]
     if datasetname in dataset_list:
         raise Exception("Dataset name already exists")
@@ -803,9 +793,7 @@ def bf_submit_dataset(accountname, bfdataset, pathdataset):
 
     if not isdir(pathdataset):
         submitdatastatus = "Done"
-        error_message = (
-            f"{error_message}Please select a valid local dataset folder<br>"
-        )
+        error_message = f"{error_message}Please select a valid local dataset folder<br>"
         did_fail = True
         did_upload = False
         c += 1
@@ -933,7 +921,7 @@ def upload_folder_in_buckets():
             root_pennsieve_folder = myds.create_collection(root_folder_name)
             myds.update()
             folders = {root_folder_name: root_pennsieve_folder}
-            
+
             # top down scan through dataset to upload each file/folder
             for dirpath, child_dirs, files in os.walk(pathdataset, topdown=True):
                 #  get the current root directory's name not its relative path
@@ -1070,10 +1058,10 @@ def bf_submit_dataset_upload_details():
     Function frequently called by front end to help keep track of the amount of files that have
     been successfully uploaded to Pennsieve, and the size of the uploaded files
 
-    Returns: 
-        uploaded_files - 
-        uploaded_file_size - 
-        did_fail - 
+    Returns:
+        uploaded_files -
+        uploaded_file_size -
+        did_fail -
         did_upload -  to inform the user that the upload failed and that it failed after uploading data - important for logging upload sessions
         upload_folder_count - the number of folders that have been uploaded
 
@@ -1119,12 +1107,12 @@ def submit_dataset_progress():
         elapsed_time_formatted_display = "<br>" + "Initiating..." + "<br>"
     # gevent.sleep(0)
     return {
-        'progress': submitdataprogress + elapsed_time_formatted_display,
-        'submit_dataset_status': submitdatastatus,
-        'submit_print_status': submitprintstatus,
-        'total_file_size': total_file_size,
-        'upload_file_size': uploaded_file_size,
-        'elapsed_time_formatted': elapsed_time_formatted,
+        "progress": submitdataprogress + elapsed_time_formatted_display,
+        "submit_dataset_status": submitdatastatus,
+        "submit_print_status": submitprintstatus,
+        "total_file_size": total_file_size,
+        "upload_file_size": uploaded_file_size,
+        "elapsed_time_formatted": elapsed_time_formatted,
     }
 
 
@@ -1145,7 +1133,7 @@ def bf_get_users(selected_bfaccount):
         bf = Pennsieve(selected_bfaccount)
     except Exception as e:
         abort(400, f"{e}")
-        
+
     try:
         # organization_name = bf.context.name
         organization_id = bf.context.id
@@ -1188,7 +1176,9 @@ def bf_get_teams(selected_bfaccount):
     try:
         organization_id = bf.context.id
         list_teams = bf._api._get(f"/organizations/{str(organization_id)}/teams")
-        list_teams_name = [list_teams[i]["team"]["name"] for i in range(len(list_teams))]
+        list_teams_name = [
+            list_teams[i]["team"]["name"] for i in range(len(list_teams))
+        ]
 
         list_teams_name.sort()  # Returning the list of teams in alphabetical order
         return {"teams": list_teams_name}
@@ -1280,7 +1270,10 @@ def bf_get_permission(selected_bfaccount, selected_bfdataset):
                         + organization_role
                     )
 
-        return {"permissions": list_dataset_permission_first_last_role, "team_ids": team_ids}
+        return {
+            "permissions": list_dataset_permission_first_last_role,
+            "team_ids": team_ids,
+        }
 
     except Exception as e:
         raise e
@@ -1387,9 +1380,12 @@ def bf_add_permission(
                     and last_name == last_name_current_user
                 ):
                     if role not in ["owner", "manager"]:
-                        abort(403, "You must be dataset owner or manager to change its permissions")
+                        abort(
+                            403,
+                            "You must be dataset owner or manager to change its permissions",
+                        )
                     elif selected_role == "owner" and role != "owner":
-                        abort(403,"You must be dataset owner to change the ownership")
+                        abort(403, "You must be dataset owner to change the ownership")
                     else:
                         c += 1
                 # check if selected user is owner, dataset permission cannot be changed for owner
@@ -1397,7 +1393,10 @@ def bf_add_permission(
                     abort(400, "Owner's permission cannot be changed")
 
             if c == 0:
-                abort(403,"You must be dataset owner or manager to change its permissions")
+                abort(
+                    403,
+                    "You must be dataset owner or manager to change its permissions",
+                )
 
             if selected_role == "remove current permissions":
 
@@ -1418,7 +1417,14 @@ def bf_add_permission(
                     + "/collaborators/owner".format(dataset_id=selected_dataset_id),
                     json={"id": selected_user_id},
                 )
-                return {"message":  "Permission " + "'" + selected_role + "' " + " added for " + selected_user}
+                return {
+                    "message": "Permission "
+                    + "'"
+                    + selected_role
+                    + "' "
+                    + " added for "
+                    + selected_user
+                }
             else:
                 bf._api.datasets._put(
                     "/"
@@ -1426,7 +1432,14 @@ def bf_add_permission(
                     + "/collaborators/users".format(dataset_id=selected_dataset_id),
                     json={"id": selected_user_id, "role": selected_role},
                 )
-                return {"message": "Permission " + "'" + selected_role + "' " + " added for " + selected_user}
+                return {
+                    "message": "Permission "
+                    + "'"
+                    + selected_role
+                    + "' "
+                    + " added for "
+                    + selected_user
+                }
         except Exception as e:
             raise e
 
@@ -1455,14 +1468,18 @@ def bf_add_permission_team(
         error_message = "Please select a valid Pennsieve account"
         abort(400, error_message)
 
-
     if selected_team == "SPARC Data Curation Team":
         if bf.context.id != "N:organization:618e8dd9-f8d2-4dc4-9abb-c6aaab2e78a0":
-            abort(403, "Please login under the Pennsieve SPARC Organization to share with the Curation Team")
+            abort(
+                403,
+                "Please login under the Pennsieve SPARC Organization to share with the Curation Team",
+            )
     if selected_team == "SPARC Embargoed Data Sharing Group":
         if bf.context.id != "N:organization:618e8dd9-f8d2-4dc4-9abb-c6aaab2e78a0":
-            abort(403, "Please login under the Pennsieve SPARC Organization to share with the SPARC consortium group")
-
+            abort(
+                403,
+                "Please login under the Pennsieve SPARC Organization to share with the SPARC consortium group",
+            )
 
     c = 0
 
@@ -1522,7 +1539,10 @@ def bf_add_permission_team(
                 and last_name == last_name_current_user
             ):
                 if role not in ["owner", "manager"]:
-                    abort(403, "You must be dataset owner or manager to change its permissions")
+                    abort(
+                        403,
+                        "You must be dataset owner or manager to change its permissions",
+                    )
                 else:
                     c += 1
         if c == 0:
@@ -1544,14 +1564,18 @@ def bf_add_permission_team(
                 + "/collaborators/teams".format(dataset_id=selected_dataset_id),
                 json={"id": selected_team_id, "role": selected_role},
             )
-            return {"message": "Permission " + "'" + selected_role + "' " + " added for " + selected_team}
+            return {
+                "message": "Permission "
+                + "'"
+                + selected_role
+                + "' "
+                + " added for "
+                + selected_team
+            }
     except Exception as e:
         raise e
 
 
-
-
-
 def bf_get_subtitle(selected_bfaccount, selected_bfdataset):
     """
     Function to get current subtitle associated with a selected dataset
@@ -1563,7 +1587,6 @@ def bf_get_subtitle(selected_bfaccount, selected_bfdataset):
         License name, if any, or "No license" message
     """
 
-
     try:
         bf = Pennsieve(selected_bfaccount)
     except Exception as e:
@@ -1589,9 +1612,6 @@ def bf_get_subtitle(selected_bfaccount, selected_bfdataset):
         raise Exception(e)
 
 
-
-
-
 def bf_add_subtitle(selected_bfaccount, selected_bfdataset, input_subtitle):
     """
     Args:
@@ -1616,22 +1636,22 @@ def bf_add_subtitle(selected_bfaccount, selected_bfdataset, input_subtitle):
         error_message = "Please select a valid Pennsieve dataset"
         abort(400, error_message)
 
-  
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager"]:
-        error_message = "You don't have permissions for editing metadata on this Pennsieve dataset"
+        error_message = (
+            "You don't have permissions for editing metadata on this Pennsieve dataset"
+        )
         abort(403, error_message)
 
     try:
         selected_dataset_id = myds.id
         jsonfile = {"description": input_subtitle}
         bf._api.datasets._put("/" + str(selected_dataset_id), json=jsonfile)
-        return{ "message": "Subtitle added!"}
+        return {"message": "Subtitle added!"}
     except Exception as e:
         raise Exception(e)
 
 
-
 def bf_get_description(selected_bfaccount, selected_bfdataset):
     """
     Function to get current description associated with a selected dataset
@@ -1657,7 +1677,9 @@ def bf_get_description(selected_bfaccount, selected_bfdataset):
 
     try:
         selected_dataset_id = myds.id
-        dataset_readme_info = bf._api._get(f"/datasets/{str(selected_dataset_id)}/readme")
+        dataset_readme_info = bf._api._get(
+            f"/datasets/{str(selected_dataset_id)}/readme"
+        )
 
         res = dataset_readme_info["readme"]
         return {"description": res}
@@ -1665,9 +1687,6 @@ def bf_get_description(selected_bfaccount, selected_bfdataset):
         raise Exception(e)
 
 
-
-
-
 def bf_add_description(selected_bfaccount, selected_bfdataset, markdown_input):
     """
     Args:
@@ -1692,25 +1711,22 @@ def bf_add_description(selected_bfaccount, selected_bfdataset, markdown_input):
         error_message = "Please select a valid Pennsieve dataset"
         abort(400, error_message)
 
-
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager"]:
-        error_message = "You don't have permissions for editing metadata on this Pennsieve dataset"
+        error_message = (
+            "You don't have permissions for editing metadata on this Pennsieve dataset"
+        )
         abort(403, error_message)
 
-
     try:
         selected_dataset_id = myds.id
         jsonfile = {"readme": markdown_input}
         bf._api.datasets._put(f"/{str(selected_dataset_id)}/readme", json=jsonfile)
-        return{ "message": "Description added!"}
+        return {"message": "Description added!"}
     except Exception as e:
         raise Exception(e)
 
 
-
-
-
 def bf_get_banner_image(selected_bfaccount, selected_bfdataset):
     """
     Function to get url of current banner image associated with a selected dataset
@@ -1736,7 +1752,9 @@ def bf_get_banner_image(selected_bfaccount, selected_bfdataset):
 
     try:
         selected_dataset_id = myds.id
-        dataset_banner_info = bf._api._get(f"/datasets/{str(selected_dataset_id)}/banner")
+        dataset_banner_info = bf._api._get(
+            f"/datasets/{str(selected_dataset_id)}/banner"
+        )
 
         list_keys = dataset_banner_info.keys()
         if "banner" in list_keys:
@@ -1748,9 +1766,6 @@ def bf_get_banner_image(selected_bfaccount, selected_bfdataset):
         raise Exception(e)
 
 
-
-
-
 def bf_add_banner_image(selected_bfaccount, selected_bfdataset, banner_image_path):
     """
     Function to add banner to a selected dataset
@@ -1775,19 +1790,21 @@ def bf_add_banner_image(selected_bfaccount, selected_bfdataset, banner_image_pat
         error_message = "Please select a valid Pennsieve dataset"
         abort(400, error_message)
 
-
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager"]:
-        error_message = "You don't have permissions for editing metadata on this Pennsieve dataset"
+        error_message = (
+            "You don't have permissions for editing metadata on this Pennsieve dataset"
+        )
         abort(403, error_message)
 
-
     try:
         selected_dataset_id = myds.id
 
         def upload_image():
             with open(banner_image_path, "rb") as f:
-                bf._api._put(f"/datasets/{str(selected_dataset_id)}/banner", files={"banner": f})
+                bf._api._put(
+                    f"/datasets/{str(selected_dataset_id)}/banner", files={"banner": f}
+                )
 
         # delete banner image folder if it is located in SODA
         gevent.spawn(upload_image())
@@ -1803,9 +1820,6 @@ def upload_image():
         raise Exception(e)
 
 
-
-
-
 def bf_get_license(selected_bfaccount, selected_bfdataset):
     """
     Function to get current license associated with a selected dataset
@@ -1842,9 +1856,6 @@ def bf_get_license(selected_bfaccount, selected_bfdataset):
         raise Exception(e)
 
 
-
-
-
 def bf_add_license(selected_bfaccount, selected_bfdataset, selected_license):
     """
     Args:
@@ -1869,13 +1880,13 @@ def bf_add_license(selected_bfaccount, selected_bfdataset, selected_license):
         error_message = "Please select a valid Pennsieve dataset"
         abort(400, error_message)
 
-
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager"]:
-        error_message = "You don't have permissions for editing metadata on this Pennsieve dataset"
+        error_message = (
+            "You don't have permissions for editing metadata on this Pennsieve dataset"
+        )
         abort(403, error_message)
 
-
     allowed_licenses_list = [
         "Community Data License Agreement – Permissive",
         "Community Data License Agreement – Sharing",
@@ -1896,17 +1907,13 @@ def bf_add_license(selected_bfaccount, selected_bfdataset, selected_license):
         abort(403, error)
     selected_dataset_id = myds.id
     jsonfile = {"license": selected_license}
-    try: 
+    try:
         bf._api.datasets._put(f"/{str(selected_dataset_id)}", json=jsonfile)
     except Exception as e:
         raise Exception(e) from e
     return {"message": "License added!"}
 
 
-
-
-
-
 def bf_get_dataset_status(selected_bfaccount, selected_bfdataset):
     """
     Function to get current status for a selected dataset
@@ -1934,11 +1941,15 @@ def bf_get_dataset_status(selected_bfaccount, selected_bfdataset):
     try:
         # get list of available status options
         organization_id = bf.context.id
-        list_status = bf._api._get(f"/organizations/{str(organization_id)}/dataset-status")
+        list_status = bf._api._get(
+            f"/organizations/{str(organization_id)}/dataset-status"
+        )
 
         # get current status of select dataset
         selected_dataset_id = myds.id
-        dataset_current_status = bf._api._get(f"/datasets/{str(selected_dataset_id)}")["content"]["status"]
+        dataset_current_status = bf._api._get(f"/datasets/{str(selected_dataset_id)}")[
+            "content"
+        ]["status"]
 
         return {"status_options": list_status, "current_status": dataset_current_status}
     except Exception as e:
@@ -1971,7 +1982,10 @@ def bf_change_dataset_status(selected_bfaccount, selected_bfdataset, selected_st
     try:
         role = bf_get_current_user_permission(bf, myds)
         if role not in ["owner", "manager"]:
-            abort(403, "You don't have permissions for changing the status of this Pennsieve dataset")
+            abort(
+                403,
+                "You don't have permissions for changing the status of this Pennsieve dataset",
+            )
     except Exception as e:
         raise e
 
@@ -1994,7 +2008,9 @@ def bf_change_dataset_status(selected_bfaccount, selected_bfdataset, selected_st
         selected_dataset_id = myds.id
         jsonfile = {"status": new_status}
         bf._api.datasets._put("/" + str(selected_dataset_id), json=jsonfile)
-        return { "message": "Success: Changed dataset status to '" + selected_status + "'" }
+        return {
+            "message": "Success: Changed dataset status to '" + selected_status + "'"
+        }
     except Exception as e:
         raise e
 
@@ -2114,21 +2130,20 @@ def get_pennsieve_api_key_secret(email, password, keyname):
         response = requests.request("POST", url, json=payload, headers=headers)
         response.raise_for_status()
         response = response.json()
-        return { 
-            "success": "success", 
-            "key": response["key"], 
-            "secret": response["secret"], 
-            "name": response["name"]
+        return {
+            "success": "success",
+            "key": response["key"],
+            "secret": response["secret"],
+            "name": response["name"],
         }
     except Exception as e:
         raise e
 
 
-
 def get_dataset_readme(selected_account, selected_dataset):
     """
     Function to get readme for a dataset
-    
+
         Args:
             selected_account: account name
             selected_dataset: dataset name
@@ -2143,7 +2158,6 @@ def get_dataset_readme(selected_account, selected_dataset):
     return ps._api._get(f"/datasets/{myds.id}/readme")
 
 
-
 def update_dataset_readme(selected_account, selected_dataset, updated_readme):
     """
     Update the readme of a dataset on Pennsieve with the given readme string.
@@ -2157,7 +2171,6 @@ def update_dataset_readme(selected_account, selected_dataset, updated_readme):
     if role not in ["owner", "manager"]:
         abort(403, "You don't have permissions to modify this dataset.")
 
-
     ps._api._put(f"/datasets/{myds.id}/readme", json={"readme": updated_readme})
 
     return {"message": "Readme updated"}
@@ -2166,7 +2179,7 @@ def update_dataset_readme(selected_account, selected_dataset, updated_readme):
 def get_dataset_tags(selected_account, selected_dataset):
     """
     Function to get tags for a dataset
-    
+
         Args:
             selected_account: account name
             selected_dataset: dataset name
@@ -2199,13 +2212,11 @@ def update_dataset_tags(selected_account, selected_dataset, updated_tags):
     if role not in ["owner", "manager"]:
         abort(403, "You don't have permissions to modify this dataset.")
 
-
     ps._api._put(f"/datasets/{myds.id}", json={"tags": updated_tags})
 
     return {"message": "Tags updated"}
 
 
-
 def scale_image(imagePath):
     """
     Scale the image to be within the file size limit for banner images (5MB)
@@ -2215,17 +2226,18 @@ def scale_image(imagePath):
     img = cv2.imread(imagePath)
     original_width = int(img.shape[1])
     original_height = int(img.shape[0])
-    home_path = os.path.expanduser('~')
-    store_image_path = os.path.join(home_path, 'SODA', 'banner-image', (filename + file_extension))
-    #file size is greater than 5mb
+    home_path = os.path.expanduser("~")
+    store_image_path = os.path.join(
+        home_path, "SODA", "banner-image", (filename + file_extension)
+    )
+    # file size is greater than 5mb
     if original_width > max_image_size or original_height > max_image_size:
         width = 2048
         height = 2048
         dim = (width, height)
 
         # resize image into 2048x2048
-        resized_image = cv2.resize(img, dim, interpolation = cv2.INTER_AREA)
+        resized_image = cv2.resize(img, dim, interpolation=cv2.INTER_AREA)
         cv2.imwrite(store_image_path, resized_image)
 
-    return { "scaled_image_path": store_image_path }
-
+    return {"scaled_image_path": store_image_path}
diff --git a/pyflask/manageNeuroconv/manage_neuroconv.py b/pyflask/manageNeuroconv/manage_neuroconv.py
index f53d49f5d..61d3f352b 100644
--- a/pyflask/manageNeuroconv/manage_neuroconv.py
+++ b/pyflask/manageNeuroconv/manage_neuroconv.py
@@ -17,7 +17,9 @@ def get_all_interface_info() -> dict:
         for technique, format_name_to_interface in techniques.items():
             for format_name, interface in format_name_to_interface.items():
                 # interface = format_name_to_interface
-                interface_info[format_name] = {  # Note in the full scope, format_name won't be unique
+                interface_info[
+                    format_name
+                ] = {  # Note in the full scope, format_name won't be unique
                     "modality": modality,
                     "name": interface.__name__,  # Where is this value used in the display?
                     "technique": technique,  # Is this actually necessary anymore?
diff --git a/pyflask/minimumApiVersion/__init__.py b/pyflask/minimumApiVersion/__init__.py
index 841b93ccf..982b0a886 100644
--- a/pyflask/minimumApiVersion/__init__.py
+++ b/pyflask/minimumApiVersion/__init__.py
@@ -1,2 +1 @@
-from .apiVersion import get_api_version 
-
+from .apiVersion import get_api_version
diff --git a/pyflask/minimumApiVersion/apiVersion.py b/pyflask/minimumApiVersion/apiVersion.py
index fbe900bda..410fdd262 100644
--- a/pyflask/minimumApiVersion/apiVersion.py
+++ b/pyflask/minimumApiVersion/apiVersion.py
@@ -1,7 +1,8 @@
 import os
 
+
 def get_api_version():
     """
     Returns the version of the API
     """
-    return {'version': os.getenv('API_VERSION')}
\ No newline at end of file
+    return {"version": os.getenv("API_VERSION")}
diff --git a/pyflask/namespaces/__init__.py b/pyflask/namespaces/__init__.py
index d7e10bb21..887341c25 100644
--- a/pyflask/namespaces/__init__.py
+++ b/pyflask/namespaces/__init__.py
@@ -1,2 +1,2 @@
 from .configureNamespaces import configure_namespaces, get_namespace, NamespaceEnum
-from .namespaceLogger import get_namespace_logger
\ No newline at end of file
+from .namespaceLogger import get_namespace_logger
diff --git a/pyflask/namespaces/configureNamespaces.py b/pyflask/namespaces/configureNamespaces.py
index 7b574a275..5e14a2648 100644
--- a/pyflask/namespaces/configureNamespaces.py
+++ b/pyflask/namespaces/configureNamespaces.py
@@ -17,50 +17,82 @@ class NamespaceEnum(Enum):
     DATASETS = "datasets"
     COLLECTIONS = "collections"
 
+
 # namespaces dictionary that is given a namespace name as a key and returns the corresponding namespace object as a value
-namespaces = { }
+namespaces = {}
+
 
 def configure_namespaces():
     """
     Create namespaces for each pysoda file: pysoda ( now manage_datasets), prepare_metadata, etc
     """
-    neuroconv_namespace = Namespace(NamespaceEnum.NEUROCONV.value, description='Routes for handling neuroconv requests')
+    neuroconv_namespace = Namespace(
+        NamespaceEnum.NEUROCONV.value,
+        description="Routes for handling neuroconv requests",
+    )
     namespaces[NamespaceEnum.NEUROCONV] = neuroconv_namespace
-    
-    manage_datasets_namespace = Namespace(NamespaceEnum.MANAGE_DATASETS.value, description='Routes for handling manage datsets functionality')
+
+    manage_datasets_namespace = Namespace(
+        NamespaceEnum.MANAGE_DATASETS.value,
+        description="Routes for handling manage datsets functionality",
+    )
     namespaces[NamespaceEnum.MANAGE_DATASETS] = manage_datasets_namespace
 
     # validate_dataset_namespace = Namespace(NamespaceEnum.VALIDATE_DATASET.value, description='Routes for handling validate dataset functionality')
     # namespaces[NamespaceEnum.VALIDATE_DATASET] = validate_dataset_namespace
 
-    curate_datasets_namespace = Namespace(NamespaceEnum.CURATE_DATASETS.value, description='Routes for handling dataset curation')
+    curate_datasets_namespace = Namespace(
+        NamespaceEnum.CURATE_DATASETS.value,
+        description="Routes for handling dataset curation",
+    )
     namespaces[NamespaceEnum.CURATE_DATASETS] = curate_datasets_namespace
 
-    disseminate_datasets_namespace = Namespace(NamespaceEnum.DISSEMINATE_DATASETS.value, description='Routes for handling dataset dissemination')
+    disseminate_datasets_namespace = Namespace(
+        NamespaceEnum.DISSEMINATE_DATASETS.value,
+        description="Routes for handling dataset dissemination",
+    )
     namespaces[NamespaceEnum.DISSEMINATE_DATASETS] = disseminate_datasets_namespace
 
-    prepare_metadata_namespace = Namespace(NamespaceEnum.PREPARE_METADATA.value, description='Routes for handling metadata preparation')
+    prepare_metadata_namespace = Namespace(
+        NamespaceEnum.PREPARE_METADATA.value,
+        description="Routes for handling metadata preparation",
+    )
     namespaces[NamespaceEnum.PREPARE_METADATA] = prepare_metadata_namespace
 
-    organize_datasets_namespace = Namespace(NamespaceEnum.ORGANIZE_DATASETS.value, description='Routes for handling dataset organization')
+    organize_datasets_namespace = Namespace(
+        NamespaceEnum.ORGANIZE_DATASETS.value,
+        description="Routes for handling dataset organization",
+    )
     namespaces[NamespaceEnum.ORGANIZE_DATASETS] = organize_datasets_namespace
 
-    organize_datasets_namespace = Namespace(NamespaceEnum.STARTUP.value, description='Routes for handling python server startup verification')
+    organize_datasets_namespace = Namespace(
+        NamespaceEnum.STARTUP.value,
+        description="Routes for handling python server startup verification",
+    )
     namespaces[NamespaceEnum.STARTUP] = organize_datasets_namespace
 
-    taxonomy_namespace = Namespace(NamespaceEnum.TAXONOMY.value, description='Routes for handling taxonomy functionality')
+    taxonomy_namespace = Namespace(
+        NamespaceEnum.TAXONOMY.value,
+        description="Routes for handling taxonomy functionality",
+    )
     namespaces[NamespaceEnum.TAXONOMY] = taxonomy_namespace
 
-    user_namespace = Namespace(NamespaceEnum.USER.value, description='Routes for handling user functionality')
+    user_namespace = Namespace(
+        NamespaceEnum.USER.value, description="Routes for handling user functionality"
+    )
     namespaces[NamespaceEnum.USER] = user_namespace
 
-    datasets_namespace = Namespace(NamespaceEnum.DATASETS.value, description='Routes for handling dataset functionality')
+    datasets_namespace = Namespace(
+        NamespaceEnum.DATASETS.value,
+        description="Routes for handling dataset functionality",
+    )
     namespaces[NamespaceEnum.DATASETS] = datasets_namespace
 
-    collections_namespace = Namespace(NamespaceEnum.COLLECTIONS.value, description='Routes for handling collections')
+    collections_namespace = Namespace(
+        NamespaceEnum.COLLECTIONS.value, description="Routes for handling collections"
+    )
     namespaces[NamespaceEnum.COLLECTIONS] = collections_namespace
 
 
-
 def get_namespace(namespace_name):
     return namespaces[namespace_name]
diff --git a/pyflask/namespaces/namespaceLogger.py b/pyflask/namespaces/namespaceLogger.py
index d9cff1721..be0b61ab3 100644
--- a/pyflask/namespaces/namespaceLogger.py
+++ b/pyflask/namespaces/namespaceLogger.py
@@ -1,4 +1,5 @@
-from .configureNamespaces import  namespaces
+from .configureNamespaces import namespaces
+
 
 def get_namespace_logger(namespace_name):
     "Retrieve the attached logger for a specific namespace. Valid namespaces are those within the NamespaceEnum class"
diff --git a/pyflask/organizeDatasets/__init__.py b/pyflask/organizeDatasets/__init__.py
index 90fb71b4a..243cf8ac5 100644
--- a/pyflask/organizeDatasets/__init__.py
+++ b/pyflask/organizeDatasets/__init__.py
@@ -1,7 +1,7 @@
-from .organize_datasets import ( 
+from .organize_datasets import (
     generate_dataset_locally,
     create_soda_json_object_backend,
     monitor_local_json_progress,
     import_pennsieve_dataset,
-    monitor_pennsieve_json_progress
-)
\ No newline at end of file
+    monitor_pennsieve_json_progress,
+)
diff --git a/pyflask/organizeDatasets/organize_datasets.py b/pyflask/organizeDatasets/organize_datasets.py
index df37bef88..4ca4b5a36 100644
--- a/pyflask/organizeDatasets/organize_datasets.py
+++ b/pyflask/organizeDatasets/organize_datasets.py
@@ -25,6 +25,7 @@
 import pathlib
 from datetime import datetime, timezone
 from namespaces import NamespaceEnum, get_namespace_logger
+
 namespace_logger = get_namespace_logger(NamespaceEnum.ORGANIZE_DATASETS)
 
 from manageDatasets import bf_get_current_user_permission
@@ -62,11 +63,11 @@
 forbidden_characters_bf = '\/:*?"<>'
 
 
-
 ### Internal functions
 def TZLOCAL():
     return datetime.now(timezone.utc).astimezone().tzinfo
 
+
 ## these subsequent CheckLeafValue and traverseForLeafNodes functions check for the validity of file paths,
 ## and folder and file size
 def checkLeafValue(leafName, leafNodeValue):
@@ -94,11 +95,12 @@ def checkLeafValue(leafName, leafNodeValue):
         error = error + leafName + " is empty <br>"
 
     if c > 0:
-        error += "<br>Please remove invalid files/folders from your dataset and try again"
+        error += (
+            "<br>Please remove invalid files/folders from your dataset and try again"
+        )
         curatestatus = "Done"
         abort(400, error)
 
-
     return [True, total_dataset_size - 1]
 
 
@@ -195,7 +197,11 @@ def generate_dataset_locally(destinationdataset, pathdataset, newdatasetname, js
             abort(400, "Please enter a valid name for new dataset folder")
         if check_forbidden_characters(newdatasetname):
             curatestatus = "Done"
-            abort(400,  "A folder name cannot contain any of the following characters " + forbidden_characters)
+            abort(
+                400,
+                "A folder name cannot contain any of the following characters "
+                + forbidden_characters,
+            )
 
     total_dataset_size = 1
 
@@ -830,11 +836,10 @@ def monitor_local_json_progress():
         "create_soda_json_progress": create_soda_json_progress,
         "create_soda_json_total_items": create_soda_json_total_items,
         "progress_percentage": progress_percentage,
-        "create_soda_json_completed": create_soda_json_completed
+        "create_soda_json_completed": create_soda_json_completed,
     }
 
 
-
 def import_pennsieve_dataset(soda_json_structure, requested_sparc_only=True):
     global namespace_logger
 
@@ -900,7 +905,7 @@ def verify_file_name(file_name, extension):
             if file_name.find(ext) != -1:
                 double_ext = True
                 break
-                
+
         extension_from_name = ""
 
         if double_ext == False:
@@ -916,13 +921,11 @@ def verify_file_name(file_name, extension):
         else:
             return file_name + ("." + extension)
 
-    
-
     def createFolderStructure(subfolder_json, pennsieve_account, manifest):
         # root level folder will pass subfolders into this function and will recursively check if there are subfolders while creating the json structure
         global namespace_logger
         global create_soda_json_progress
-        
+
         collection_id = subfolder_json["path"]
         bf = pennsieve_account
         subfolder = bf._api._get("/packages/" + str(collection_id))
@@ -937,15 +940,17 @@ def createFolderStructure(subfolder_json, pennsieve_account, manifest):
                     item_name[0:8] != "manifest"
                 ):  # manifest files are not being included json structure
 
-                    #verify file name first
-                    if("extension" not in children_content):
+                    # verify file name first
+                    if "extension" not in children_content:
                         item_name = verify_file_name(item_name, "")
                     else:
-                        item_name = verify_file_name(item_name, children_content["extension"])
-                        
+                        item_name = verify_file_name(
+                            item_name, children_content["extension"]
+                        )
+
                     ## verify timestamps
                     timestamp = items["content"]["createdAt"]
-                    formatted_timestamp = timestamp.replace('.', ',')
+                    formatted_timestamp = timestamp.replace(".", ",")
                     subfolder_json["files"][item_name] = {
                         "action": ["existing"],
                         "path": item_id,
@@ -956,7 +961,6 @@ def createFolderStructure(subfolder_json, pennsieve_account, manifest):
                     for paths in subfolder_json["bfpath"]:
                         subfolder_json["files"][item_name]["bfpath"].append(paths)
 
-                    
                     # creates path for item_name (stored in temp_name)
                     if len(subfolder_json["files"][item_name]["bfpath"]) > 1:
                         temp_name = ""
@@ -974,9 +978,9 @@ def createFolderStructure(subfolder_json, pennsieve_account, manifest):
                     if len(manifest.keys()) > 0:
                         if "filename" in manifest:
                             if temp_name in manifest["filename"].values():
-                                location_index = list(manifest["filename"].values()).index(
-                                    temp_name
-                                )
+                                location_index = list(
+                                    manifest["filename"].values()
+                                ).index(temp_name)
                                 if manifest["description"][location_index] != "":
                                     subfolder_json["files"][item_name][
                                         "description"
@@ -986,12 +990,14 @@ def createFolderStructure(subfolder_json, pennsieve_account, manifest):
                                         "additional-metadata"
                                     ] = manifest["Additional Metadata"][location_index]
                                 if manifest["file type"][location_index] != "":
-                                        subfolder_json["files"][item_name]["file type"] = manifest["file type"][location_index]
+                                    subfolder_json["files"][item_name][
+                                        "file type"
+                                    ] = manifest["file type"][location_index]
                         elif "File Name" in manifest:
                             if temp_name in manifest["File Name"].values():
-                                location_index = list(manifest["File Name"].values()).index(
-                                    temp_name
-                                )
+                                location_index = list(
+                                    manifest["File Name"].values()
+                                ).index(temp_name)
                                 if manifest["description"][location_index] != "":
                                     subfolder_json["files"][item_name][
                                         "description"
@@ -1001,7 +1007,9 @@ def createFolderStructure(subfolder_json, pennsieve_account, manifest):
                                         "additional-metadata"
                                     ] = manifest["Additional Metadata"][location_index]
                                 if manifest["file type"][location_index] != "":
-                                        subfolder_json["files"][item_name]["file type"] = manifest["file type"][location_index]
+                                    subfolder_json["files"][item_name][
+                                        "file type"
+                                    ] = manifest["file type"][location_index]
             else:  # another subfolder found
                 subfolder_json["folders"][item_name] = {
                     "action": ["existing"],
@@ -1103,7 +1111,6 @@ def createFolderStructure(subfolder_json, pennsieve_account, manifest):
                     "bfpath": [item_name],
                 }
 
-
     # manifest information is needed so it is looked for before the recursive calls are made
     if len(soda_json_structure["dataset-structure"]["folders"].keys()) != 0:
         for folder in soda_json_structure["dataset-structure"]["folders"].keys():
@@ -1160,6 +1167,7 @@ def createFolderStructure(subfolder_json, pennsieve_account, manifest):
         "import_total_items": create_soda_json_total_items,
     }
 
+
 def monitor_pennsieve_json_progress():
     """
     Function for monitoring progress of soda_json object
diff --git a/pyflask/prepareMetadata/__init__.py b/pyflask/prepareMetadata/__init__.py
index d42dd940d..b9840f209 100644
--- a/pyflask/prepareMetadata/__init__.py
+++ b/pyflask/prepareMetadata/__init__.py
@@ -13,8 +13,8 @@
     import_bf_RC,
     upload_RC_file,
     delete_manifest_dummy_folders,
-    set_template_path, 
+    set_template_path,
     import_bf_manifest_file,
     manifest_creation_progress,
-    edit_bf_manifest_file
-)
\ No newline at end of file
+    edit_bf_manifest_file,
+)
diff --git a/pyflask/prepareMetadata/prepare_metadata.py b/pyflask/prepareMetadata/prepare_metadata.py
index 8674fd867..78c5569e9 100644
--- a/pyflask/prepareMetadata/prepare_metadata.py
+++ b/pyflask/prepareMetadata/prepare_metadata.py
@@ -21,7 +21,11 @@
 from collections import defaultdict
 from pennsieve import Pennsieve
 import requests
-from errorHandlers import is_file_not_found_exception, is_invalid_file_exception, InvalidDeliverablesDocument
+from errorHandlers import (
+    is_file_not_found_exception,
+    is_invalid_file_exception,
+    InvalidDeliverablesDocument,
+)
 
 from string import ascii_uppercase
 import itertools
@@ -31,16 +35,20 @@
 from openpyxl.styles import PatternFill, Font
 from docx import Document
 
-from flask import abort 
+from flask import abort
 
 from manageDatasets import (
     bf_get_current_user_permission,
 )
-from curate import create_high_level_manifest_files_existing_bf_starting_point, get_name_extension
+from curate import (
+    create_high_level_manifest_files_existing_bf_starting_point,
+    get_name_extension,
+)
 
 from pysodaUtils import agent_running
 
 from namespaces import NamespaceEnum, get_namespace_logger
+
 namespace_logger = get_namespace_logger(NamespaceEnum.CURATE_DATASETS)
 
 userpath = expanduser("~")
@@ -56,7 +64,6 @@ def set_template_path(soda_base_path, soda_resources_path):
     """
     global TEMPLATE_PATH
 
-
     # once pysoda has been packaged with pyinstaller
     # it creates an archive that slef extracts to an OS-specific temp directory.
     # Due to this we can no longer use a relative path from the pysoda directory to the file_templates folder.
@@ -69,13 +76,10 @@ def set_template_path(soda_base_path, soda_resources_path):
         TEMPLATE_PATH = join(soda_resources_path, "file_templates")
 
 
-
-
-
 ### Import Data Deliverables document
 def import_milestone(filepath):
     """
-        Import Data Deliverables document
+    Import Data Deliverables document
     """
     doc = Document(filepath)
     try:
@@ -128,7 +132,9 @@ def save_submission_file(upload_boolean, bfaccount, bfdataset, filepath, val_arr
 
     source = join(TEMPLATE_PATH, "submission.xlsx")
 
-    destination = join(METADATA_UPLOAD_BF_PATH, "submission.xlsx") if upload_boolean else filepath
+    destination = (
+        join(METADATA_UPLOAD_BF_PATH, "submission.xlsx") if upload_boolean else filepath
+    )
 
     try:
         shutil.copyfile(source, destination)
@@ -174,10 +180,12 @@ def upload_RC_file(text_string, file_type, bfaccount, bfdataset):
 
     upload_metadata_file(file_type, bfaccount, bfdataset, file_path, True)
 
-    return { "size": size, "filepath": file_path }
+    return {"size": size, "filepath": file_path}
 
 
-def upload_metadata_file(file_type, bfaccount, bfdataset, file_path, delete_after_upload):
+def upload_metadata_file(
+    file_type, bfaccount, bfdataset, file_path, delete_after_upload
+):
     ## check if agent is running in the background
     agent_running()
 
@@ -185,18 +193,19 @@ def upload_metadata_file(file_type, bfaccount, bfdataset, file_path, delete_afte
         bf = Pennsieve(bfaccount)
     except Exception:
         abort(400, "Please select a valid Pennsieve account.")
-    
+
     # check that the Pennsieve dataset is valid
     try:
         myds = bf.get_dataset(bfdataset)
     except Exception:
         abort(400, "Please select a valid Pennsieve dataset.")
 
-
     # check that the user has permissions for uploading and modifying the dataset
     role = bf_get_current_user_permission(bf, myds)
     if role not in ["owner", "manager", "editor"]:
-        abort(403, "You don't have permissions for uploading to this Pennsieve dataset.")
+        abort(
+            403, "You don't have permissions for uploading to this Pennsieve dataset."
+        )
 
     # handle duplicates on Pennsieve: first, obtain the existing file ID
     for i in range(len(myds.items)):
@@ -213,6 +222,7 @@ def upload_metadata_file(file_type, bfaccount, bfdataset, file_path, delete_afte
     if delete_after_upload:
         os.remove(file_path)
 
+
 def excel_columns(start_index=0):
     """
     NOTE: does not support more than 699 contributors/links
@@ -220,7 +230,7 @@ def excel_columns(start_index=0):
     single_letter = list(ascii_uppercase[start_index:])
     two_letter = [a + b for a, b in itertools.product(ascii_uppercase, ascii_uppercase)]
     return single_letter + two_letter
-  
+
 
 def rename_headers(workbook, max_len, start_index):
     """
@@ -258,7 +268,9 @@ def grayout_subheaders(workbook, max_len, start_index):
     headers_list = ["4", "10", "18", "23", "28"]
     columns_list = excel_columns(start_index=start_index)
 
-    for (i, column), no in itertools.product(zip(range(2, max_len + 1), columns_list[1:]), headers_list):
+    for (i, column), no in itertools.product(
+        zip(range(2, max_len + 1), columns_list[1:]), headers_list
+    ):
         cell = workbook[column + no]
         fillColor("B2B2B2", cell)
 
@@ -270,7 +282,9 @@ def grayout_single_value_rows(workbook, max_len, start_index):
 
     columns_list = excel_columns(start_index=start_index)
     row_list = ["2", "3", "5", "6", "9", "11", "12", "13", "17", "29", "30"]
-    for (i, column), no in itertools.product(zip(range(2, max_len + 1), columns_list[1:]), row_list):
+    for (i, column), no in itertools.product(
+        zip(range(2, max_len + 1), columns_list[1:]), row_list
+    ):
         cell = workbook[column + no]
         fillColor("CCCCCC", cell)
 
@@ -497,9 +511,9 @@ def save_ds_description_file(
     "protocol url or doi",
 ]
 
+
 def upload_code_description_metadata(filepath, bfAccount, bfDataset):
     upload_metadata_file("code_description.xlsx", bfAccount, bfDataset, filepath, False)
-        
 
 
 def save_subjects_file(upload_boolean, bfaccount, bfdataset, filepath, datastructure):
@@ -661,23 +675,25 @@ def convert_subjects_samples_file_to_df(type, filepath, ui_fields):
     if type == "subjects":
         if "subject id" not in list(subjects_df.columns.values):
             abort(
-                400, 
-                "The header 'subject id' is required to import an existing subjects file. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/subjects.xlsx'>template</a> of the subjects file."
+                400,
+                "The header 'subject id' is required to import an existing subjects file. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/subjects.xlsx'>template</a> of the subjects file.",
             )
 
         elif checkEmptyColumn(subjects_df["subject id"]):
             abort(
                 400,
-                "At least 1 'subject id' is required to import an existing subjects file"
+                "At least 1 'subject id' is required to import an existing subjects file",
             )
 
         templateHeaderList = subjectsTemplateHeaderList
 
     else:
-        if "subject id" not in list(subjects_df.columns.values) or "sample id" not in list(subjects_df.columns.values):
+        if "subject id" not in list(
+            subjects_df.columns.values
+        ) or "sample id" not in list(subjects_df.columns.values):
             abort(
                 400,
-                "The headers 'subject id' and 'sample id' are required to import an existing samples file. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/samples.xlsx'>template</a> of the samples file."
+                "The headers 'subject id' and 'sample id' are required to import an existing samples file. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/samples.xlsx'>template</a> of the samples file.",
             )
 
         if checkEmptyColumn(subjects_df["sample id"]) or checkEmptyColumn(
@@ -685,7 +701,7 @@ def convert_subjects_samples_file_to_df(type, filepath, ui_fields):
         ):
             abort(
                 400,
-                "At least 1 'subject id' and 'sample id' pair is required to import an existing samples file"
+                "At least 1 'subject id' and 'sample id' pair is required to import an existing samples file",
             )
 
         templateHeaderList = samplesTemplateHeaderList
@@ -713,7 +729,11 @@ def convert_subjects_samples_file_to_df(type, filepath, ui_fields):
 
     sortMatrix = sortedSubjectsTableData(transpose, ui_fields)
 
-    return {"sample_file_rows": transposeMatrix(sortMatrix)} if type in ["samples.xlsx", "samples"] else {"subject_file_rows": transposeMatrix(sortMatrix)}
+    return (
+        {"sample_file_rows": transposeMatrix(sortMatrix)}
+        if type in ["samples.xlsx", "samples"]
+        else {"subject_file_rows": transposeMatrix(sortMatrix)}
+    )
 
 
 ### function to read existing Pennsieve manifest files and load info into a dictionary
@@ -774,7 +794,6 @@ def checkEmptyColumn(column):
     return False
 
 
-
 ## load/import an existing local or Pennsieve submission.xlsx file
 def load_existing_submission_file(filepath):
 
@@ -815,7 +834,7 @@ def load_existing_submission_file(filepath):
         if key not in DD_df_lower:
             abort(
                 400,
-                "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/submission.xlsx'>template</a> of the submission."
+                "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/submission.xlsx'>template</a> of the submission.",
             )
 
     for header_name in basicHeaders:
@@ -823,7 +842,7 @@ def load_existing_submission_file(filepath):
         if header_name not in set(submissionItems):
             abort(
                 400,
-                "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/submission.xlsx'>template</a> of the submission."
+                "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/submission.xlsx'>template</a> of the submission.",
             )
 
     awardNo = DD_df["Value"][0]
@@ -844,16 +863,15 @@ def load_existing_submission_file(filepath):
 
 # import existing metadata files except Readme and Changes from Pennsieve
 def import_bf_metadata_file(file_type, ui_fields, bfaccount, bfdataset):
-    try: 
+    try:
         bf = Pennsieve(bfaccount)
     except Exception:
         abort(400, "Please select a valid Pennsieve account.")
 
-    try: 
+    try:
         myds = bf.get_dataset(bfdataset)
     except Exception:
         abort(400, "Please select a valid Pennsieve dataset.")
-    
 
     for i in range(len(myds.items)):
 
@@ -874,9 +892,7 @@ def import_bf_metadata_file(file_type, ui_fields, bfaccount, bfdataset):
             elif file_type == "samples.xlsx":
                 return convert_subjects_samples_file_to_df("samples", url, ui_fields)
 
-    abort(400, 
-        f"No {file_type} file was found at the root of the dataset provided."
-    )
+    abort(400, f"No {file_type} file was found at the root of the dataset provided.")
 
 
 # import readme or changes file from Pennsieve
@@ -904,7 +920,7 @@ def import_bf_RC(bfaccount, bfdataset, file_type):
             response = requests.get(url)
             return {"text": response.text}
 
-    abort (400, f"No {file_type} file was found at the root of the dataset provided.")
+    abort(400, f"No {file_type} file was found at the root of the dataset provided.")
 
 
 # path to local SODA folder for saving manifest files
@@ -912,7 +928,7 @@ def import_bf_RC(bfaccount, bfdataset, file_type):
 manifest_progress = {
     "total_manifest_files": 0,
     "manifest_files_uploaded": 0,
-    "finished": False
+    "finished": False,
 }
 
 # TODO: NOTE: ESSENTIAL: Remove the manifest_file even if the user does not generate before pulling again.
@@ -941,10 +957,14 @@ def import_bf_manifest_file(soda_json_structure, bfaccount, bfdataset):
     high_level_folders = ["code", "derivative", "docs", "primary", "protocol", "source"]
 
     # handle updating any existing manifest files on Pennsieve
-    update_existing_pennsieve_manifest_files(myds, bf, dataset_structure, high_level_folders)
+    update_existing_pennsieve_manifest_files(
+        myds, bf, dataset_structure, high_level_folders
+    )
 
     # create manifest files from scratch for any high level folders that don't have a manifest file on Pennsieve
-    create_high_level_manifest_files_existing_bf_starting_point(soda_json_structure, high_level_folders, manifest_progress)
+    create_high_level_manifest_files_existing_bf_starting_point(
+        soda_json_structure, high_level_folders, manifest_progress
+    )
 
     # finished with the manifest generation process
     manifest_progress["finished"] = True
@@ -952,7 +972,9 @@ def import_bf_manifest_file(soda_json_structure, bfaccount, bfdataset):
     no_manifest_boolean = False
 
 
-def update_existing_pennsieve_manifest_files(myds, bf, dataset_structure, high_level_folders):
+def update_existing_pennsieve_manifest_files(
+    myds, bf, dataset_structure, high_level_folders
+):
     global manifest_progress
     # handle updating any existing manifest files on Pennsieve
     for i in range(len(myds.items)):
@@ -984,7 +1006,9 @@ def update_existing_pennsieve_manifest_files(myds, bf, dataset_structure, high_l
 
                     high_level_folders.remove(myds.items[i].name)
 
-                    updated_manifest_dict = update_existing_pennsieve_manifest_file(dataset_structure["folders"][myds.items[i].name], manifest_df)
+                    updated_manifest_dict = update_existing_pennsieve_manifest_file(
+                        dataset_structure["folders"][myds.items[i].name], manifest_df
+                    )
 
                     if not exists(join(manifest_folder_path, myds.items[i].name)):
                         # create the path
@@ -1003,39 +1027,62 @@ def update_existing_pennsieve_manifest_files(myds, bf, dataset_structure, high_l
 
 def update_existing_pennsieve_manifest_file(high_level_folder, manifest_df):
     """
-        Given a high level folder and the existing manifest file therein, create a new updated manifest file. 
-        This manifest file needs to have files that only exist in the high level folder. Additionally, it needs to 
-        retain any custom metadata that the user has added to the old manifest file for entries that still exist. 
+    Given a high level folder and the existing manifest file therein, create a new updated manifest file.
+    This manifest file needs to have files that only exist in the high level folder. Additionally, it needs to
+    retain any custom metadata that the user has added to the old manifest file for entries that still exist.
     """
 
-    new_manifest_dict = {'filename': [], 'timestamp': [], 'description': [], 'file type': [], 'Additional Metadata': []}
-    SET_COLUMNS = ['filename', 'timestamp', 'description', 'file type', 'Additional Metadata']
-    for column in manifest_df.columns: 
+    new_manifest_dict = {
+        "filename": [],
+        "timestamp": [],
+        "description": [],
+        "file type": [],
+        "Additional Metadata": [],
+    }
+    SET_COLUMNS = [
+        "filename",
+        "timestamp",
+        "description",
+        "file type",
+        "Additional Metadata",
+    ]
+    for column in manifest_df.columns:
         if column not in new_manifest_dict:
             new_manifest_dict[column] = []
             SET_COLUMNS.append(column)
 
     # convert the old manifest into a dictionary to optimize the lookup time
-    old_manifest_dict = {x:manifest_df[x].values.tolist() for x in manifest_df}
+    old_manifest_dict = {x: manifest_df[x].values.tolist() for x in manifest_df}
 
     # create a mapping of filename to the idx of the row in the old_manidest_dict
-    filename_idx_map = {x:i for i, x in enumerate(manifest_df['filename'])}
+    filename_idx_map = {x: i for i, x in enumerate(manifest_df["filename"])}
 
     # traverse through the high level folder items
-    update_existing_pennsieve_manifest_file_helper(high_level_folder, old_manifest_dict, new_manifest_dict, filename_idx_map, manifest_columns=SET_COLUMNS)
+    update_existing_pennsieve_manifest_file_helper(
+        high_level_folder,
+        old_manifest_dict,
+        new_manifest_dict,
+        filename_idx_map,
+        manifest_columns=SET_COLUMNS,
+    )
 
-    # write the new manifest_df to the correct location as an excel file 
+    # write the new manifest_df to the correct location as an excel file
     return new_manifest_dict
 
 
-def update_existing_pennsieve_manifest_file_helper(folder, old_manifest_dict, new_manifest_dict, filename_idx_map, manifest_columns):
+def update_existing_pennsieve_manifest_file_helper(
+    folder, old_manifest_dict, new_manifest_dict, filename_idx_map, manifest_columns
+):
     """
-        Traverse through each high level folder in the dataset and update the new manifest data frame.
+    Traverse through each high level folder in the dataset and update the new manifest data frame.
     """
 
     if "files" in folder.keys():
         for file in list(folder["files"]):
-            file_path = remove_high_level_folder_from_path(folder["files"][file]["folderpath"]) + f"{file}"
+            file_path = (
+                remove_high_level_folder_from_path(folder["files"][file]["folderpath"])
+                + f"{file}"
+            )
 
             # select the row in the old manifest file that has the same file path as the file in the current folder
             # rationale: this means the file still exists in the user's dataset
@@ -1044,19 +1091,24 @@ def update_existing_pennsieve_manifest_file_helper(folder, old_manifest_dict, ne
             if row_idx is None:
                 for key in new_manifest_dict.keys():
                     if key == "filename":
-                        new_manifest_dict["filename"].append(file_path)   
+                        new_manifest_dict["filename"].append(file_path)
                     elif key == "timestamp":
-                        new_manifest_dict["timestamp"].append(folder["files"][file]["timestamp"]), 
-                    elif key == "description": 
-                        new_manifest_dict["description"].append(folder["files"][file].get("description", ""))
+                        new_manifest_dict["timestamp"].append(
+                            folder["files"][file]["timestamp"]
+                        ),
+                    elif key == "description":
+                        new_manifest_dict["description"].append(
+                            folder["files"][file].get("description", "")
+                        )
                     elif key == "file type":
                         unused_file_name, file_extension = get_name_extension(file)
-                        new_manifest_dict["file type"].append(file_extension), 
+                        new_manifest_dict["file type"].append(file_extension),
                     elif key == "Additional Metadata":
-                        new_manifest_dict["Additional Metadata"].append(folder["files"][file].get("additional-metadata", ""))
+                        new_manifest_dict["Additional Metadata"].append(
+                            folder["files"][file].get("additional-metadata", "")
+                        )
                     else:
                         new_manifest_dict[key].append("")
-                    
 
             else:
                 # add the existing rows to the new manifest dictionary's arrays
@@ -1066,34 +1118,38 @@ def update_existing_pennsieve_manifest_file_helper(folder, old_manifest_dict, ne
 
     if "folders" in folder.keys():
         for current_folder in list(folder["folders"]):
-            update_existing_pennsieve_manifest_file_helper(folder["folders"][current_folder], old_manifest_dict, new_manifest_dict, filename_idx_map, manifest_columns)
+            update_existing_pennsieve_manifest_file_helper(
+                folder["folders"][current_folder],
+                old_manifest_dict,
+                new_manifest_dict,
+                filename_idx_map,
+                manifest_columns,
+            )
 
-    return 
+    return
 
 
 def manifest_creation_progress():
     """
-        Monitors the progress of the manifest creation process.
+    Monitors the progress of the manifest creation process.
     """
     global manifest_progress
 
     return {
-            "manifest_files_uploaded": manifest_progress["manifest_files_uploaded"], 
-            "total_manifest_files": manifest_progress["total_manifest_files"],
-            "finished": manifest_progress["finished"]
-           }
+        "manifest_files_uploaded": manifest_progress["manifest_files_uploaded"],
+        "total_manifest_files": manifest_progress["total_manifest_files"],
+        "finished": manifest_progress["finished"],
+    }
 
 
 def remove_high_level_folder_from_path(paths):
     """
-        Remove the high level folder from the path. This is necessary because the high level folder is not included in the manifest file name entry.
+    Remove the high level folder from the path. This is necessary because the high level folder is not included in the manifest file name entry.
     """
 
     return "" if len(paths) == 1 else "/".join(paths[1:]) + "/"
 
 
-
-
 def copytree(src, dst, symlinks=False, ignore=None):
     for item in os.listdir(src):
         s = os.path.join(src, item)
@@ -1115,7 +1171,6 @@ def returnFileURL(bf_object, item_id):
         f"/packages/{str(item_id)}/files/{str(file_id)}"
     )
 
-
     return file_url_info["url"]
 
 
@@ -1220,32 +1275,34 @@ def load_existing_DD_file(import_type, filepath):
     # check if Metadata Element a.k.a Header column exists
     for key in ["Metadata element", "Description", "Example", "Value"]:
         if key not in DD_df:
-            abort(400, 
-                "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/dataset_description.xlsx'>template</a> of the dataset_description."
+            abort(
+                400,
+                "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/dataset_description.xlsx'>template</a> of the dataset_description.",
             )
 
     if "Metadata element" not in DD_df:
-        abort(400, 
-            "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/dataset_description.xlsx'>template</a> of the dataset_description."
+        abort(
+            400,
+            "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/dataset_description.xlsx'>template</a> of the dataset_description.",
         )
 
     else:
         for header_name in header_list:
             if header_name not in set(DD_df["Metadata element"]):
-                abort(400, 
-                    "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/dataset_description.xlsx'>template</a> of the dataset_description."
+                abort(
+                    400,
+                    "The imported file is not in the correct format. Please refer to the new SPARC Dataset Structure (SDS) 2.0.0 <a target='_blank' href='https://github.com/SciCrunch/sparc-curation/blob/master/resources/DatasetTemplate/dataset_description.xlsx'>template</a> of the dataset_description.",
                 )
 
     if non_empty_1st_value := checkEmptyColumn(DD_df["Value"]):
-        abort(400, 
-            "At least 1 value is required to import an existing dataset_description file"
+        abort(
+            400,
+            "At least 1 value is required to import an existing dataset_description file",
         )
 
     # drop Description and Examples columns
     DD_df = DD_df.drop(columns=["Description", "Example"])
 
-
-
     ## convert DD_df to array of arrays (a matrix)
     DD_matrix = DD_df.to_numpy().tolist()
 
@@ -1291,10 +1348,7 @@ def edit_bf_manifest_file(edit_action, manifest_type):
     if edit_action == "drop_empty_manifest_columns":
         drop_manifest_empty_columns(manifest_file_location)
 
-    return 
-
-
-    
+    return
 
 
 def drop_manifest_empty_columns(manifest_file_location):
@@ -1304,21 +1358,29 @@ def drop_manifest_empty_columns(manifest_file_location):
 
     # go through each high level folder
     for high_level_folder in high_level_folders:
-        # read the folder's excel file 
+        # read the folder's excel file
         manifest_df = pd.read_excel(
-                        os.path.join(manifest_file_location, high_level_folder, "manifest.xlsx"), engine="openpyxl", usecols=column_check, header=0
-                    )
+            os.path.join(manifest_file_location, high_level_folder, "manifest.xlsx"),
+            engine="openpyxl",
+            usecols=column_check,
+            header=0,
+        )
         custom_columns = []
 
         # get the custom columns from the data frame
-        SET_COLUMNS = ['filename', 'timestamp', 'description', 'file type', 'Additional Metadata']
-        for column in manifest_df.columns: 
+        SET_COLUMNS = [
+            "filename",
+            "timestamp",
+            "description",
+            "file type",
+            "Additional Metadata",
+        ]
+        for column in manifest_df.columns:
             if column not in SET_COLUMNS:
                 custom_columns.append(column)
 
-
         # for each custom column delete the column if all values are null/empty
-        manifest_dict = {x:manifest_df[x].values.tolist() for x in manifest_df}
+        manifest_dict = {x: manifest_df[x].values.tolist() for x in manifest_df}
 
         for column in custom_columns:
             if all([pd.isna(x) for x in manifest_dict[column]]):
@@ -1329,5 +1391,7 @@ def drop_manifest_empty_columns(manifest_file_location):
         edited_manifest_df = pd.DataFrame.from_dict(manifest_dict)
 
         # save the data frame to the manifest folder as an excel file
-        edited_manifest_df.to_excel(os.path.join(manifest_file_location, high_level_folder, "manifest.xlsx"), index=False)
-
+        edited_manifest_df.to_excel(
+            os.path.join(manifest_file_location, high_level_folder, "manifest.xlsx"),
+            index=False,
+        )
diff --git a/pyflask/pysodaUtils/__init__.py b/pyflask/pysodaUtils/__init__.py
index 9eb2c8cd1..1606a406b 100644
--- a/pyflask/pysodaUtils/__init__.py
+++ b/pyflask/pysodaUtils/__init__.py
@@ -1 +1,9 @@
-from .pysodaUtils import clear_queue, agent_running, socket_address, agent_cmd, check_forbidden_characters, check_forbidden_characters_bf, bf_dataset_size
\ No newline at end of file
+from .pysodaUtils import (
+    clear_queue,
+    agent_running,
+    socket_address,
+    agent_cmd,
+    check_forbidden_characters,
+    check_forbidden_characters_bf,
+    bf_dataset_size,
+)
diff --git a/pyflask/pysodaUtils/pysodaUtils.py b/pyflask/pysodaUtils/pysodaUtils.py
index 3a36dc30c..6cadd27b4 100644
--- a/pyflask/pysodaUtils/pysodaUtils.py
+++ b/pyflask/pysodaUtils/pysodaUtils.py
@@ -1,9 +1,4 @@
-from pennsieve.api.agent import (
-    agent_cmd,
-    agent_cmd,
-    AgentError,
-    socket_address
-)
+from pennsieve.api.agent import agent_cmd, agent_cmd, AgentError, socket_address
 import subprocess
 from websocket import create_connection
 import socket
@@ -40,6 +35,8 @@ def agent_running():
 
 
 forbidden_characters = '<>:"/\|?*'
+
+
 def check_forbidden_characters(my_string):
     """
     Check for forbidden characters in file/folder name
@@ -55,6 +52,8 @@ def check_forbidden_characters(my_string):
 
 
 forbidden_characters_bf = '\/:*?"<>'
+
+
 def check_forbidden_characters_bf(my_string):
     """
     Check for forbidden characters in Pennsieve file/folder name
@@ -68,7 +67,7 @@ def check_forbidden_characters_bf(my_string):
     regex = re.compile(f"[{forbidden_characters_bf}]")
     return regex.search(my_string) is not None or "\\" in r"%r" % my_string
 
-    
+
 def bf_dataset_size():
     """
     Function to get storage size of a dataset on Pennsieve
diff --git a/pyflask/setupUtils/configureAPI.py b/pyflask/setupUtils/configureAPI.py
index 0f97ec96d..d76117dfb 100644
--- a/pyflask/setupUtils/configureAPI.py
+++ b/pyflask/setupUtils/configureAPI.py
@@ -5,4 +5,8 @@
 
 
 def configureAPI():
-    return Api(version=getenv("API_VERSION"), title="NWB GUIDE API", description="NWB GUIDE's API")
+    return Api(
+        version=getenv("API_VERSION"),
+        title="NWB GUIDE API",
+        description="NWB GUIDE's API",
+    )
diff --git a/pyflask/setupUtils/configureLogger.py b/pyflask/setupUtils/configureLogger.py
index e7ed02d44..497571a3e 100644
--- a/pyflask/setupUtils/configureLogger.py
+++ b/pyflask/setupUtils/configureLogger.py
@@ -2,16 +2,19 @@
 import logging
 import logging.handlers
 
+
 def configureLogger(app):
-    LOG_FOLDER = path.join(path.expanduser('~'), "SODA" , 'logs')
+    LOG_FOLDER = path.join(path.expanduser("~"), "SODA", "logs")
     LOG_FILENAME = "api.log"
     LOG_PATH = path.join(LOG_FOLDER, LOG_FILENAME)
 
     if not path.exists(LOG_FOLDER):
         makedirs(LOG_FOLDER)
 
-    # Add the log message handler to the logger 
-    handler = logging.handlers.RotatingFileHandler( LOG_PATH, maxBytes=5 * 1024 * 1024, backupCount=3)
+    # Add the log message handler to the logger
+    handler = logging.handlers.RotatingFileHandler(
+        LOG_PATH, maxBytes=5 * 1024 * 1024, backupCount=3
+    )
 
     # create logging formatter
     logFormatter = logging.Formatter(
@@ -21,4 +24,4 @@ def configureLogger(app):
     handler.setFormatter(logFormatter)
 
     app.logger.addHandler(handler)
-    app.logger.setLevel(logging.DEBUG)
\ No newline at end of file
+    app.logger.setLevel(logging.DEBUG)
diff --git a/pyflask/startup/__init__.py b/pyflask/startup/__init__.py
index f464ca06b..679fa7b5f 100644
--- a/pyflask/startup/__init__.py
+++ b/pyflask/startup/__init__.py
@@ -1,2 +1,2 @@
 from .echo import echo
-from .minimumApiVersion import get_api_version
\ No newline at end of file
+from .minimumApiVersion import get_api_version
diff --git a/pyflask/startup/echo.py b/pyflask/startup/echo.py
index 8987593cd..4a110d228 100644
--- a/pyflask/startup/echo.py
+++ b/pyflask/startup/echo.py
@@ -1,2 +1,2 @@
 def echo(self, text):
-    return text
\ No newline at end of file
+    return text
diff --git a/pyflask/startup/minimumApiVersion.py b/pyflask/startup/minimumApiVersion.py
index abf461832..007382cbb 100644
--- a/pyflask/startup/minimumApiVersion.py
+++ b/pyflask/startup/minimumApiVersion.py
@@ -1,10 +1,9 @@
 import os
 
+
 def get_api_version():
     """
     Returns the version of the API
     """
 
-    return {'version': os.getenv('API_VERSION', "9.4.1")}
-
-
+    return {"version": os.getenv("API_VERSION", "9.4.1")}
diff --git a/pyflask/taxonomy/__init__.py b/pyflask/taxonomy/__init__.py
index 10857e628..42e2df13a 100644
--- a/pyflask/taxonomy/__init__.py
+++ b/pyflask/taxonomy/__init__.py
@@ -1 +1 @@
-from .taxonomy import load_taxonomy_species
\ No newline at end of file
+from .taxonomy import load_taxonomy_species
diff --git a/pyflask/taxonomy/taxonomy.py b/pyflask/taxonomy/taxonomy.py
index 2e52dd55e..ae2bda590 100644
--- a/pyflask/taxonomy/taxonomy.py
+++ b/pyflask/taxonomy/taxonomy.py
@@ -15,4 +15,4 @@ def load_taxonomy_species(animalList):
                 "OtherNames": result[0]["OtherNames"],
             }
 
-    return animalDict
\ No newline at end of file
+    return animalDict
diff --git a/pyflask/users/__init__.py b/pyflask/users/__init__.py
index 6e423a77e..9f4cf0e6c 100644
--- a/pyflask/users/__init__.py
+++ b/pyflask/users/__init__.py
@@ -1 +1 @@
-from .user import integrate_orcid_with_pennsieve, get_user
\ No newline at end of file
+from .user import integrate_orcid_with_pennsieve, get_user
diff --git a/pyflask/users/user.py b/pyflask/users/user.py
index 901ab8af6..e15a67ff3 100644
--- a/pyflask/users/user.py
+++ b/pyflask/users/user.py
@@ -1,46 +1,40 @@
 from pennsieve import Pennsieve
-from flask import abort 
+from flask import abort
 from utils import get_authenticated_ps
 
 
-
-
 def integrate_orcid_with_pennsieve(access_code, pennsieve_account):
-  """
-  Given an OAuth access code link a user's ORCID ID to their Pennsieve account.
-  This is required in order to publish a dataset for review with the SPARC Consortium.
-  """
-
-  if access_code == "" or access_code is None:
-    abort(400, "Cannot integrate your ORCID iD to Pennsieve without an access code.")
-
-  # verify Pennsieve account
-  try:
-    bf = Pennsieve(pennsieve_account)
-  except Exception as e:
-     abort(400, "Error: Please select a valid Pennsieve account")
-    
-  
-  try:
-    bf._api._post("/user/orcid", json={"authorizationCode":access_code})
-  except Exception as e:
-    print(e)
-    abort(400, "Invalid access code")
-
-  
+    """
+    Given an OAuth access code link a user's ORCID ID to their Pennsieve account.
+    This is required in order to publish a dataset for review with the SPARC Consortium.
+    """
 
+    if access_code == "" or access_code is None:
+        abort(
+            400, "Cannot integrate your ORCID iD to Pennsieve without an access code."
+        )
 
+    # verify Pennsieve account
+    try:
+        bf = Pennsieve(pennsieve_account)
+    except Exception as e:
+        abort(400, "Error: Please select a valid Pennsieve account")
 
+    try:
+        bf._api._post("/user/orcid", json={"authorizationCode": access_code})
+    except Exception as e:
+        print(e)
+        abort(400, "Invalid access code")
 
 
 def get_user(selected_account):
-  """
-  Get a user's information.
-  """
+    """
+    Get a user's information.
+    """
 
-  ps = get_authenticated_ps(selected_account)
+    ps = get_authenticated_ps(selected_account)
 
-  try:
-    return ps._api._get("/user")
-  except Exception as e:
-    abort(500, e.response.json()["message"])
\ No newline at end of file
+    try:
+        return ps._api._get("/user")
+    except Exception as e:
+        abort(500, e.response.json()["message"])
diff --git a/pyflask/utils/__init__.py b/pyflask/utils/__init__.py
index 6ce78ba16..c0b7a3b37 100644
--- a/pyflask/utils/__init__.py
+++ b/pyflask/utils/__init__.py
@@ -1,3 +1,3 @@
 from .metadataStringToList import metadata_string_to_list
 from .getDataset import get_dataset, get_dataset_http
-from .apiAuthentication import get_authenticated_ps
\ No newline at end of file
+from .apiAuthentication import get_authenticated_ps
diff --git a/pyflask/utils/apiAuthentication.py b/pyflask/utils/apiAuthentication.py
index e60466eab..1e0f7534d 100644
--- a/pyflask/utils/apiAuthentication.py
+++ b/pyflask/utils/apiAuthentication.py
@@ -1,6 +1,7 @@
 from pennsieve import Pennsieve
 from flask import abort
 
+
 def get_authenticated_ps(pennsieve_account):
     """
     Returns an authenticated pennsieve client object given a Pennsieve account name
@@ -10,4 +11,4 @@ def get_authenticated_ps(pennsieve_account):
     except Exception as e:
         abort(400, "Please select a valid Pennsieve account")
 
-    return ps
\ No newline at end of file
+    return ps
diff --git a/pyflask/utils/getDataset.py b/pyflask/utils/getDataset.py
index ab3a22b8c..aec90653c 100644
--- a/pyflask/utils/getDataset.py
+++ b/pyflask/utils/getDataset.py
@@ -3,6 +3,7 @@
 
 PENNSIEVE_URL = "https://api.pennsieve.io"
 
+
 def get_dataset(ps, selected_dataset):
     """
     Function to get the dataset using the Pennsieve python client.
@@ -14,7 +15,6 @@ def get_dataset(ps, selected_dataset):
         # TODO: Account for 500 errors
         abort(400, "Please select a valid Pennsieve dataset")
 
-    
     return myds
 
 
@@ -22,9 +22,10 @@ def get_dataset_http(selected_dataset, access_token):
     """
     Function to get the dataset via HTTP using a Pennsieve aws cognito access token.
     """
-    r = requests.get(f"{PENNSIEVE_URL}/datasets/{selected_dataset}", headers={"Authorization": f"Bearer {access_token}"})
+    r = requests.get(
+        f"{PENNSIEVE_URL}/datasets/{selected_dataset}",
+        headers={"Authorization": f"Bearer {access_token}"},
+    )
     r.raise_for_status()
 
     return r.json()
-
-    
\ No newline at end of file
diff --git a/pyflask/utils/metadataStringToList.py b/pyflask/utils/metadataStringToList.py
index ea13b4767..22b358341 100644
--- a/pyflask/utils/metadataStringToList.py
+++ b/pyflask/utils/metadataStringToList.py
@@ -1,4 +1,3 @@
-
 def metadata_string_to_list(metadata_string):
     """
     Converts a metadata string to a list of metadata.
@@ -11,4 +10,12 @@ def metadata_string_to_list(metadata_string):
     if metadata_string is None:
         return []
     else:
-        return list(map(str.strip, metadata_string.strip('][').replace("'", '').replace('"', '').split(',')))
\ No newline at end of file
+        return list(
+            map(
+                str.strip,
+                metadata_string.strip("][")
+                .replace("'", "")
+                .replace('"', "")
+                .split(","),
+            )
+        )
diff --git a/pyflask/validator/hooks/hook-frozendict.py b/pyflask/validator/hooks/hook-frozendict.py
index d29ef26e9..47b89d55a 100644
--- a/pyflask/validator/hooks/hook-frozendict.py
+++ b/pyflask/validator/hooks/hook-frozendict.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('frozendict', True)
\ No newline at end of file
+datas = collect_data_files("frozendict", True)
diff --git a/pyflask/validator/hooks/hook-idlib.py b/pyflask/validator/hooks/hook-idlib.py
index e07caa29a..29c71573e 100644
--- a/pyflask/validator/hooks/hook-idlib.py
+++ b/pyflask/validator/hooks/hook-idlib.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('idlib', True)
\ No newline at end of file
+datas = collect_data_files("idlib", True)
diff --git a/pyflask/validator/hooks/hook-ontquery.py b/pyflask/validator/hooks/hook-ontquery.py
index 1171f0623..374dadcc9 100644
--- a/pyflask/validator/hooks/hook-ontquery.py
+++ b/pyflask/validator/hooks/hook-ontquery.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('ontquery', True)
\ No newline at end of file
+datas = collect_data_files("ontquery", True)
diff --git a/pyflask/validator/hooks/hook-protc-lib.py b/pyflask/validator/hooks/hook-protc-lib.py
index dd20ecfc9..e1df0ce38 100644
--- a/pyflask/validator/hooks/hook-protc-lib.py
+++ b/pyflask/validator/hooks/hook-protc-lib.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('protc-lib', True)
\ No newline at end of file
+datas = collect_data_files("protc-lib", True)
diff --git a/pyflask/validator/hooks/hook-protcur.py b/pyflask/validator/hooks/hook-protcur.py
index bd43d755f..2f7b01e0a 100644
--- a/pyflask/validator/hooks/hook-protcur.py
+++ b/pyflask/validator/hooks/hook-protcur.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('protcur', True)
\ No newline at end of file
+datas = collect_data_files("protcur", True)
diff --git a/pyflask/validator/hooks/hook-pyontutils.py b/pyflask/validator/hooks/hook-pyontutils.py
index 824a2bf6d..2470ec8e5 100644
--- a/pyflask/validator/hooks/hook-pyontutils.py
+++ b/pyflask/validator/hooks/hook-pyontutils.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('pyontutils', True)
\ No newline at end of file
+datas = collect_data_files("pyontutils", True)
diff --git a/pyflask/validator/hooks/hook-pysercomb.py b/pyflask/validator/hooks/hook-pysercomb.py
index 583153fe0..2e7bb97b4 100644
--- a/pyflask/validator/hooks/hook-pysercomb.py
+++ b/pyflask/validator/hooks/hook-pysercomb.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('pysercomb', True)
\ No newline at end of file
+datas = collect_data_files("pysercomb", True)
diff --git a/pyflask/validator/hooks/hook-sparcur.py b/pyflask/validator/hooks/hook-sparcur.py
index b57ef8599..b12c3d775 100644
--- a/pyflask/validator/hooks/hook-sparcur.py
+++ b/pyflask/validator/hooks/hook-sparcur.py
@@ -1,3 +1,3 @@
 from PyInstaller.utils.hooks import collect_data_files
 
-datas = collect_data_files('sparcur', True)
\ No newline at end of file
+datas = collect_data_files("sparcur", True)
diff --git a/pyflask/validator/validator.py b/pyflask/validator/validator.py
index 27c191a73..1d32e9e7a 100644
--- a/pyflask/validator/validator.py
+++ b/pyflask/validator/validator.py
@@ -25,18 +25,18 @@
 #     elif sys.platform == "linux":
 #         return str(Path.home()) + "/.config/" + folder
 #     elif sys.platform == "darwin":
-#         return str(Path.home()) + "/AppData/Local/" + folder 
+#         return str(Path.home()) + "/AppData/Local/" + folder
 
 
-# # validate a local dataset at the target directory 
+# # validate a local dataset at the target directory
 # def val_dataset_local_pipeline(ds_path):
 #     # convert the path to absolute from user's home directory
 #     joined_path = os.path.join(userpath, ds_path.strip())
 
-#     # check that the directory exists 
+#     # check that the directory exists
 #     valid_directory = os.path.isdir(joined_path)
 
-#     # give user an error 
+#     # give user an error
 #     if not valid_directory:
 #         raise OSError(f"The given directory does not exist: {joined_path}")
 
@@ -46,7 +46,7 @@
 #     # validate the dataset
 #     blob = validate(norm_ds_path)
 
-#     # peel out the status object 
+#     # peel out the status object
 #     status = blob.get('status')
 
 #     # peel out the path_error_report object
@@ -62,10 +62,6 @@
 # parent_folder = SparCurPath(local_sparc_dataset_location).expanduser()
 
 
-
-
-
-
 # # for gevent
 # local_dataset_folder_path = ""
 # validation_json = {}
@@ -79,8 +75,8 @@
 # # min template for orthauth config file
 # orthauth_path_secrets_min_template = {
 #     "pennsieve": {
-#         "N:organization:618e8dd9-f8d2-4dc4-9abb-c6aaab2e78a0": { 
-#              "key": "", 
+#         "N:organization:618e8dd9-f8d2-4dc4-9abb-c6aaab2e78a0": {
+#              "key": "",
 #              "secret": ""
 #             }
 #         }
@@ -149,7 +145,7 @@
 
 #     with open(pyontutils_path_config, 'w') as file:
 #         yaml.dump(pyontutils_config, file)
-    
+
 #     # orthauth config folder path
 #     if not os.path.exists(orthauth_path):
 #         orthauth_path.mkdir(parents = True, exist_ok = True)
@@ -167,7 +163,7 @@
 
 #     return add_orthauth_yaml(ps_account)
 
-# # This pipeline first retrieves a datset to a local folder 
+# # This pipeline first retrieves a datset to a local folder
 # # and then validates the local dataset
 # def validate_dataset_pipeline(ps_account, ps_dataset):
 #     # return
@@ -190,14 +186,14 @@
 #         parent_folder.mkdir(parents = True, exist_ok = True)
 
 #     # local_dataset_folder_path = retrieve(id = sparc_dataset, dataset_id = sparc_dataset, project_id = organization, parent_parent_path = parent_folder)
-    
+
 
 #     # def temp_retrieve_function(sparc_dataset, organization, parent_folder):
 #     #     global local_dataset_folder_path
 #     #     gevent.sleep(0)
 #     #     local_dataset_folder_path = retrieve(id = sparc_dataset, dataset_id = sparc_dataset, project_id = organization, parent_parent_path = parent_folder)
 #     #     gevent.sleep(0)
-    
+
 #     # gev = []
 #     # try:
 #     #     # retrieve the dataset from Pennsive. --check for heartbeat errors here
@@ -205,7 +201,7 @@
 #     #         gevent.sleep(0)
 #     #         gev.append(gevent.spawn(temp_retrieve_function, sparc_dataset, organization, parent_folder))
 #     #         gevent.sleep(0)
-#     #         gevent.joinall(gev) 
+#     #         gevent.joinall(gev)
 #     #         gevent.sleep(0)
 #     #         try:
 #     #             gev[0].get()
@@ -232,7 +228,7 @@
 #     #     gevent.sleep(0)
 #     #     gev.append(gevent.spawn(temp_validate_function, local_dataset_folder_path))
 #     #     gevent.sleep(0)
-#     #     gevent.joinall(gev) 
+#     #     gevent.joinall(gev)
 #     #     gevent.sleep(0)
 #     #     try:
 #     #         gev[0].get()
@@ -250,7 +246,7 @@
 #     # path_error_report = {}
 #     # blob = json.dumps(validation_json, indent=4, sort_keys=True, default=str)
 
-#     # Delete the local dataset. 
+#     # Delete the local dataset.
 #     # FUTURE: Look into setting an expiration date for this one.
 #     dir_path = SparCurPath(local_sparc_dataset_location + '/' + sparc_dataset_uuid).expanduser()
 #     try:
@@ -284,7 +280,7 @@
 #     #     global local_dataset_folder_path
 #     #     local_dataset_folder_path = retrieve(id = sparc_dataset, dataset_id = sparc_dataset, project_id = organization, parent_parent_path = parent_folder)
 #     #     return
-    
+
 #     # gev = []
 #     # try:
 #     #     # retrieve the dataset from Pennsive. --check for heartbeat errors here
@@ -293,7 +289,7 @@
 #     #         # gev.append(gevent.spawn(temp_retrieve_function, sparc_dataset, organization, parent_folder))
 #     #         local_dataset_folder_path = retrieve(id = sparc_dataset, dataset_id = sparc_dataset, project_id = organization, parent_parent_path = parent_folder)
 #     #         # gevent.sleep(0)
-#     #         # gevent.joinall(gev) 
+#     #         # gevent.joinall(gev)
 #     #         # gevent.sleep(0)
 #     #         # try:
 #     #         #     gev[0].get()
@@ -307,13 +303,6 @@
 #     #     raise e
 
 
-
-
-
-
-
-
-
 # def val_dataset_pipeline(ps_account, ps_dataset):
 #     global validation_json
 
@@ -332,7 +321,7 @@
 #         gev.append(gevent.spawn(temp_validate_function, Path(sodavalidatorpath)))
 #         # validation_json = validate(local_dataset_folder_path)
 #         gevent.sleep(0)
-#         gevent.joinall(gev) 
+#         gevent.joinall(gev)
 #         # gevent.sleep(0)
 #         try:
 #             gev[0].get()
@@ -355,7 +344,7 @@
 #     #     # no folder present
 #     #     print("Error: %s : %s" % (dir_path, e.strerror))
 
-#     # Delete the local dataset. 
+#     # Delete the local dataset.
 #     # FUTURE: Look into setting an expiration date for this one.
 #     # dir_path = SparCurPath(local_sparc_dataset_location + '/' + sparc_dataset_uuid).expanduser()
 #     # try:
@@ -365,4 +354,4 @@
 #     #     print("Error: %s : %s" % (dir_path, e.strerror))
 
 #     # return the error report. We can deal with the validation on the front end.
-#     return path_error_report
\ No newline at end of file
+#     return path_error_report
diff --git a/pyflask/validator/validatorUtils/__init__.py b/pyflask/validator/validatorUtils/__init__.py
index 4f085d49c..5f229c444 100644
--- a/pyflask/validator/validatorUtils/__init__.py
+++ b/pyflask/validator/validatorUtils/__init__.py
@@ -1 +1 @@
-# from .error_path_report_parser import parse
\ No newline at end of file
+# from .error_path_report_parser import parse
diff --git a/pyflask/validator/validatorUtils/error_path_report_parser.py b/pyflask/validator/validatorUtils/error_path_report_parser.py
index 2f1141c66..76f523dbf 100644
--- a/pyflask/validator/validatorUtils/error_path_report_parser.py
+++ b/pyflask/validator/validatorUtils/error_path_report_parser.py
@@ -2,7 +2,7 @@
 
 # # return the errors from the error_path_report that should be shown to the user.
 # # as per Tom (developer of the Validator) for any paths (the keys in the Path_Error_Report object)
-# # return the ones that do not have any errors in their subpaths. 
+# # return the ones that do not have any errors in their subpaths.
 # # e.g., If given #/meta and #/meta/technique keys only return #/meta/technique (as this group doesn't have any subpaths)
 # def parse(error_path_report):
 
@@ -10,7 +10,7 @@
 
 #   keys = error_path_report.keys()
 
-#   # go through all paths and store the paths with the longest subpaths for each base 
+#   # go through all paths and store the paths with the longest subpaths for each base
 #   # also store matching subpath lengths together
 #   for k in keys:
 #     prefix = get_path_prefix(k)
@@ -20,29 +20,28 @@
 #       # as per Tom ignore inputs paths' so
 #       # remove the given prefix with 'inputs' in its path
 #       del user_errors[k]
-#       continue 
+#       continue
 
 #     # check for a suffix indicator in the prefix (aka a forward slash at the end of the prefix)
 #     if prefix[-1] == "/":
 #       # if so remove the suffix and check if the resulting prefix is an existing path key
 #       # indicating it can be removed from the errors_for_users dictionary as the current path
-#       # will be an error in its subpath -- as stated in the function comment we avoid these errors 
+#       # will be an error in its subpath -- as stated in the function comment we avoid these errors
 #       prefix_no_suffix_indicator = prefix[0: len(prefix) - 1]
 
 #       if prefix_no_suffix_indicator in user_errors:
 #         del user_errors[prefix_no_suffix_indicator]
 
 
-  
 #   return user_errors
-  
+
 
 # def get_path_prefix(path):
 #   # check if path has one "/"
 #   if path.count('/') == 1:
 #     # get the entire path as the "prefix" and return it
-#     return path 
-#   else : 
+#     return path
+#   else :
 #     # get the path up to the final "/" and return it as the prefix
 #     final_slash_idx = path.rfind("/")
 #     return path[0: final_slash_idx + 1]
diff --git a/scripts/disseminate/disseminate.js b/scripts/disseminate/disseminate.js
index cbf73d6ca..72ad80a99 100644
--- a/scripts/disseminate/disseminate.js
+++ b/scripts/disseminate/disseminate.js
@@ -1,7 +1,7 @@
 /*
 ******************************************************
 ******************************************************
-Pre-publishing Submission Workflow Section 
+Pre-publishing Submission Workflow Section
 
 Note: Some frontend elements of the workflow are in the renderer.js file as well. They are can be found under postCurationListChange() function.
       All backend requests can be found in the renderer.js file.
diff --git a/scripts/disseminate/prePublishingReview.js b/scripts/disseminate/prePublishingReview.js
index 4fecf7805..3fd40305a 100644
--- a/scripts/disseminate/prePublishingReview.js
+++ b/scripts/disseminate/prePublishingReview.js
@@ -1,10 +1,10 @@
 /*
 ******************************************************
 ******************************************************
-Submit for pre-publishing review Workflow scripts 
+Submit for pre-publishing review Workflow scripts
 
 Note: Some frontend elements of the workflow are in the renderer.js file as well. They are can be found under postCurationListChange() function.
-      
+
 ******************************************************
 ******************************************************
 */
diff --git a/scripts/guided-mode/guided-curate-dataset.js b/scripts/guided-mode/guided-curate-dataset.js
index 82dda846d..17f5f8563 100644
--- a/scripts/guided-mode/guided-curate-dataset.js
+++ b/scripts/guided-mode/guided-curate-dataset.js
@@ -863,7 +863,7 @@ const renderSideBar = (activePage) => {
     const dropDownContainer = `
       <div class="guided--nav-bar-section">
         ${dropdDown}
-        ${dropDownContent}  
+        ${dropDownContent}
       </div>
     `;
     navBarHTML += dropDownContainer;
@@ -1575,8 +1575,8 @@ const generateProgressCardElement = (progressFileJSONObj) => {
 
   return `
     <div class="guided--dataset-card">
-      ${progressFileImage /* banner image */}     
-        
+      ${progressFileImage /* banner image */}
+
       <div class="guided--dataset-card-body">
         <div class="guided--dataset-card-row">
           <h1
@@ -1588,7 +1588,7 @@ const generateProgressCardElement = (progressFileJSONObj) => {
           >${progressFileName}</h1>
         </div>
         <div class="guided--dataset-card-row">
-          <h1 
+          <h1
             class="guided--text-dataset-card progress-card-popover"
             data-tippy-content="Dataset subtitle: ${progressFileSubtitle}"
             rel="popover"
@@ -1742,7 +1742,7 @@ const renderManifestCards = () => {
 
 const generateManifestEditCard = (highLevelFolderName) => {
   return `
-    <div class="guided--dataset-card">        
+    <div class="guided--dataset-card">
       <div class="guided--dataset-card-body shrink">
         <div class="guided--dataset-card-row">
           <h1 class="guided--text-dataset-card">
@@ -5216,7 +5216,7 @@ const generateadditionalLinkRowElement = (link, linkType, linkRelation) => {
           type="button"
           class="btn btn-danger btn-sm"
           onclick="deleteAdditionalLink(this)"
-        >   
+        >
           Delete link
         </button>
       </td>
@@ -5242,7 +5242,7 @@ const generateContributorField = (
         data-contributor-first-name="${contributorFirstName ? contributorFirstName : ""}"
         data-contributor-last-name="${contributorLastName ? contributorLastName : ""}"
       >
-        <i 
+        <i
           class="fas fa-times fa-2x"
           style="
             position: absolute;
@@ -5255,7 +5255,7 @@ const generateContributorField = (
         >
         </i>
         <h2 class="guided--text-sub-step">
-          Enter 
+          Enter
           <span class="contributor-first-name">${
             contributorFirstName ? contributorFirstName : "contributor's"
           }</span>'s
@@ -5563,7 +5563,7 @@ const openGuidedEditContributorSwal = async (contibuttorOrcidToEdit) => {
             href="https://orcid.org"
             >sign up for one on orcid.org</a
           >.
-     
+
           </p>
           <label class="guided--form-label mt-md required">Affiliation(s): </label>
           <input id="guided-contributor-affiliation-input"
@@ -5843,7 +5843,7 @@ const openGuidedAddContributorSwal = async () => {
             href="https://orcid.org"
             >sign up for one on orcid.org</a
           >.
-     
+
           </p>
           <label class="guided--form-label mt-md required">Affiliation(s): </label>
           <input id="guided-contributor-affiliation-input"
@@ -6038,7 +6038,7 @@ const generateContributorTableRow = (contributorObj) => {
       <td class="middle aligned collapsing text-center">
         <button
           type="button"
-          class="btn btn-danger btn-sm" 
+          class="btn btn-danger btn-sm"
           onclick="deleteContributor(this, '${contributorOrcid}')"
         >
           Delete
@@ -6087,7 +6087,7 @@ const addContributorField = () => {
   newContributorField.style.position = "relative";
 
   newContributorField.innerHTML = `
-    <i 
+    <i
       class="fas fa-times fa-2x"
       style="
         position: absolute;
@@ -6133,7 +6133,7 @@ const addContributorField = () => {
     <input class="guided-contributor-affiliation-input"
           contenteditable="true"
     />
-  
+
     <label class="guided--form-label required mt-md">Role(s): </label>
     <input class="guided-contributor-role-input"
       contenteditable="true"
@@ -6326,7 +6326,7 @@ const removeProtocolField = (protocolElement) => {
 //TODO: handle new blank protocol fields (when parameter are blank)
 const generateProtocolField = (protocolUrl, protocolType, protocolDescription) => {
   return `
-    <tr 
+    <tr
       class="guided-protocol-field-container"
       data-protocol-url="${protocolUrl}"
       data-protocol-description="${protocolDescription}"
@@ -6351,7 +6351,7 @@ const generateProtocolField = (protocolUrl, protocolType, protocolDescription) =
       <td class="middle aligned collapsing link-name-cell">
         <button
           type="button"
-          class="btn btn-danger btn-sm" 
+          class="btn btn-danger btn-sm"
           onclick=removeProtocolField(this.parentElement.parentElement)
         >
         Delete
@@ -6739,7 +6739,7 @@ const renderSubjectSampleAdditionTable = (subject) => {
               <span class="samples-subjects-pool">${subject.poolName ? subject.poolName : ""}</span>
               <span class="samples-subject-name">${subject.subjectName}</span>
             </div>
-          
+
             Enter a unique sample ID for each sample taken from subject ${subject.subjectName}
             <button
               type="button"
@@ -8384,7 +8384,7 @@ const renderSamplesHighLevelFolderAsideItems = (highLevelFolderName) => {
                 ${subject.samples
                   .map((sample) => {
                     return `
-                    <a 
+                    <a
                       class="${highLevelFolderName}-selection-aside-item selection-aside-item"
                       data-path-suffix="${subject.poolName}/${subject.subjectName}/${sample}"
                       style="padding-left: 1rem; direction: ltr"
@@ -8412,7 +8412,7 @@ const renderSamplesHighLevelFolderAsideItems = (highLevelFolderName) => {
       </div>
         ${subject.samples
           .map((sample) => {
-            return `  
+            return `
               <a
                 class="${highLevelFolderName}-selection-aside-item selection-aside-item"
                 style="direction: ltr; padding-left: 1rem;"
@@ -8565,7 +8565,7 @@ const renderSubjectsHighLevelFolderAsideItems = (highLevelFolderName) => {
   const subjectItems = subjects
     .map((subject) => {
       return `
-          <a 
+          <a
             class="${highLevelFolderName}-selection-aside-item selection-aside-item"
             style="align-self: center; width: 97%; direction: ltr;"
             data-path-suffix="${subject.poolName ? subject.poolName + "/" : ""}${
@@ -8693,7 +8693,7 @@ const renderSubjectsMetadataAsideItems = () => {
   const subjectItems = subjects
     .map((subject) => {
       return `
-          <a 
+          <a
             class="subjects-metadata-aside-item selection-aside-item"
             data-pool-id="${subject.poolName ? subject.poolName : ""}"
           ><span class="subject-metadata-id">${subject.subjectName}</span></a>
@@ -10594,8 +10594,8 @@ $(document).ready(async () => {
           <p>Error message: ${emessage}</p>
           <p>
             Please close the SODA app and restart it again. You will be able to resume your upload
-            in progress by returning to Guided Mode and clicking the "Resume Upload" 
-            button on your dataset's progress card. 
+            in progress by returning to Guided Mode and clicking the "Resume Upload"
+            button on your dataset's progress card.
           </p>
         `,
         showCancelButton: false,
@@ -10836,8 +10836,8 @@ $(document).ready(async () => {
           <p>Error message: ${emessage}</p>
           <p>
             Please close the SODA app and restart it again. You will be able to resume your upload
-            in progress by returning to Guided Mode and clicking the "Resume Upload" 
-            button on your dataset's progress card. 
+            in progress by returning to Guided Mode and clicking the "Resume Upload"
+            button on your dataset's progress card.
           </p>
         `,
           showCancelButton: false,
diff --git a/scripts/metadata-files/submission.js b/scripts/metadata-files/submission.js
index a2bc21642..9437d9a03 100644
--- a/scripts/metadata-files/submission.js
+++ b/scripts/metadata-files/submission.js
@@ -311,7 +311,7 @@ const generateMilestoneRowElement = (dataDescription, milestoneString, dateStrin
       <td class="middle aligned">
         ${milestoneString}
       </td>
-      <td class="middle aligned collapsing"> 
+      <td class="middle aligned collapsing">
         ${dateString}
       </td>
     </tr>
diff --git a/scripts/organize-dataset/organizeDS.js b/scripts/organize-dataset/organizeDS.js
index 576bde7ce..9dbd79d75 100644
--- a/scripts/organize-dataset/organizeDS.js
+++ b/scripts/organize-dataset/organizeDS.js
@@ -818,7 +818,7 @@ function showParentSwal(duplicateArray) {
       `
     <div class="caption">
       <p>${htmlSwal}<p><ul style="text-align: start;">${listElements}</ul></p></p>
-    </div>  
+    </div>
     <div class="swal-button-container">
       <button id="skip" class="btn skip-btn" onclick="handleDuplicateImports('skip', '` +
       newList +
@@ -1098,7 +1098,7 @@ function handleDuplicateImports(btnId, duplicateArray, curationMode) {
             `
           <div class="caption">
             <p>${htmlSwal}<p><ul style="text-align: start;">${listElements}</ul></p></p>
-          </div>  
+          </div>
           <div class="swal-button-container">
             <button id="skip" class="btn skip-btn" onclick="handleDuplicateImports('skip', '` +
             newList +
@@ -1871,7 +1871,7 @@ const addFilesfunction = async (
         `
       <div class="caption">
         <p>${htmlSwal}<p><ul style="text-align:start;">${listElements}</ul></p></p>
-      </div>  
+      </div>
       <div class="swal-button-container">
       <button id="skip" class="btn skip-btn" onclick="handleDuplicateImports('skip', '` +
         list +
diff --git a/scripts/others/analytics/curation-analytics.js b/scripts/others/analytics/curation-analytics.js
index 726ec5829..88828689f 100644
--- a/scripts/others/analytics/curation-analytics.js
+++ b/scripts/others/analytics/curation-analytics.js
@@ -1,6 +1,6 @@
 /*
     Purpose: Logging analytics for our 'main_curation_function' used to generate datasets in Organize Dataset feature is becoming too complicated
-             to justify keeping it outside of its own functions. 
+             to justify keeping it outside of its own functions.
 
 */
 const { determineDatasetLocation } = require("./analytics-utils");
diff --git a/scripts/others/analytics/upload-session-tracker.js b/scripts/others/analytics/upload-session-tracker.js
index 8d40f3e04..c1a24ca4d 100644
--- a/scripts/others/analytics/upload-session-tracker.js
+++ b/scripts/others/analytics/upload-session-tracker.js
@@ -1,8 +1,8 @@
 /*
-Purpose: Creates a session ID that is used for tracking which dataset upload session a Google Analytics call with the Action 'Organize Dataset - Step 7 - *' belongs to. 
-         This is made necessary by the Pennsieve Agent's freezing during a dataset upload; which prevents us from 
-         being able to log the amount of files and their size because the user closes SODA in response. More than that we could never activate an analytics call without knowing when 
-         the Agent has frozen. This is something that the Pennsieve team has a milestone to fix however, so we will not want to work with this. 
+Purpose: Creates a session ID that is used for tracking which dataset upload session a Google Analytics call with the Action 'Organize Dataset - Step 7 - *' belongs to.
+         This is made necessary by the Pennsieve Agent's freezing during a dataset upload; which prevents us from
+         being able to log the amount of files and their size because the user closes SODA in response. More than that we could never activate an analytics call without knowing when
+         the Agent has frozen. This is something that the Pennsieve team has a milestone to fix however, so we will not want to work with this.
 */
 const { v4: uuid } = require("uuid");
 
diff --git a/scripts/validator/parse-pipeline-errors.js b/scripts/validator/parse-pipeline-errors.js
index 458cd6cc7..9d57f20b2 100644
--- a/scripts/validator/parse-pipeline-errors.js
+++ b/scripts/validator/parse-pipeline-errors.js
@@ -1,6 +1,6 @@
 /*
-    Purpose: After running a dataset validation pipeline we get back errors that are not human readable. They get piped through this module 
-             to be 'translated' into something an end user can understand. 
+    Purpose: After running a dataset validation pipeline we get back errors that are not human readable. They get piped through this module
+             to be 'translated' into something an end user can understand.
 
 */
 
@@ -17,9 +17,9 @@ const { ValidationErrorParser } = require("./validation-error-parser.js");
 const { ParsedErrorTranslator } = require("./parsed-error-translator.js");
 const { VALIDATOR_CATEGORIES } = require("./validator-categories.js");
 
-/* 
+/*
 Takes a validation error and parses the features of the error to determine what translation function to use on the error object
-@param {blame: string, message: string, pipeline_stage: string, schema_path: string[], validator: string, validator_value: string[], path: string[]} error  
+@param {blame: string, message: string, pipeline_stage: string, schema_path: string[], validator: string, validator_value: string[], path: string[]} error
          - A validation error from one of the Validator pipelines (either Pennsieve or Local)
 @param string pipeline: "pennsieve" when validating a Pennsieve dataset and "local" when validating a local dataset
 */
@@ -30,9 +30,9 @@ const validationErrorPipeline = (path, errorMessage) => {
   return translatedErrorMessage;
 };
 
-/* 
+/*
 Parse features of the given error message to determine what kind of translation needs to occur to make the message human readable
-@param object error: A validation error from the Validator. 
+@param object error: A validation error from the Validator.
 @param string pipeline: "pennsieve" when validating a Pennsieve dataset and "local" when validating a local dataset
 */
 const getTranslatedErrorMessage = (path, errorMessage) => {
diff --git a/scripts/validator/parsed-error-translator.js b/scripts/validator/parsed-error-translator.js
index eac0ef717..7e4bea086 100644
--- a/scripts/validator/parsed-error-translator.js
+++ b/scripts/validator/parsed-error-translator.js
@@ -1,5 +1,5 @@
 /*
-Purpose: A dictionary/object with translations for a particular (or form of in some more dynamic cases) validator error. The errors are 
+Purpose: A dictionary/object with translations for a particular (or form of in some more dynamic cases) validator error. The errors are
          translated into a human readable format that describes what the error is, how to fix it, and when applicable, a link to a place in SODA
          where that error can be fixed.
 
@@ -410,7 +410,7 @@ const ParsedErrorTranslator = {
 
   /*
     @param missingField string : represents the required field that was missing from the user's metadata files
-    @param metadataFile string : the metadata file that the given missing field belongs to 
+    @param metadataFile string : the metadata file that the given missing field belongs to
   */
   translateMissingRequiredProperties: (missingField, metadataFile) => {
     let errorExplanation = "";
diff --git a/scripts/validator/validation-error-parser.js b/scripts/validator/validation-error-parser.js
index fcb0aa7cd..aeaf03cd9 100644
--- a/scripts/validator/validation-error-parser.js
+++ b/scripts/validator/validation-error-parser.js
@@ -428,18 +428,18 @@ exports.ValidationErrorParser = ValidationErrorParser;
 
 /*
 
-"None of [{'contributor_name': 'Jeff, Salisbury', 'contributor_affiliation': '<', 
-          'contributor_role': ['PrincipalInvestigator']}, 
+"None of [{'contributor_name': 'Jeff, Salisbury', 'contributor_affiliation': '<',
+          'contributor_role': ['PrincipalInvestigator']},
           {'contributor_role': ['CorrespondingAuthor']}] are valid under the given schema"
 
 
-"None of [{'contributor_name': 'Jeff, Salisbury', 'contributor_affiliation': '<', 
-        'contributor_role': ['PrincipalInvestigator'], 'first_name': 'Salisbury', 
-        'last_name': 'Jeff', 
-        'id': 'file:///C:/Users/CMarroquin/temp-datasets/DatasetTemplate/contributors/Salisbury-Jeff'}, 
-        {'contributor_name': 'Wallop, San', 'contributor_affiliation': '>>', 
-        'contributor_role': ['CorrespondingAuthor'], 'first_name': 'San', 'last_name': 'Wallop', 
-        'id': 'file:///C:/Users/CMarroquin/temp-datasets/DatasetTemplate/contributors/San-Wallop'}] 
+"None of [{'contributor_name': 'Jeff, Salisbury', 'contributor_affiliation': '<',
+        'contributor_role': ['PrincipalInvestigator'], 'first_name': 'Salisbury',
+        'last_name': 'Jeff',
+        'id': 'file:///C:/Users/CMarroquin/temp-datasets/DatasetTemplate/contributors/Salisbury-Jeff'},
+        {'contributor_name': 'Wallop, San', 'contributor_affiliation': '>>',
+        'contributor_role': ['CorrespondingAuthor'], 'first_name': 'San', 'last_name': 'Wallop',
+        'id': 'file:///C:/Users/CMarroquin/temp-datasets/DatasetTemplate/contributors/San-Wallop'}]
         are valid under the given schema"
 
 */
diff --git a/scripts/validator/validator-categories.js b/scripts/validator/validator-categories.js
index 3e836a0ae..c3067c0fe 100644
--- a/scripts/validator/validator-categories.js
+++ b/scripts/validator/validator-categories.js
@@ -1,8 +1,8 @@
 /*
-Purpose: The dataset validator categorizes its errors using the below categories. Keeping these as an enum 
-         as they are referenced a lot in error parsing and translating code, 
-         and limiting mistyping would be very beneficial. I doubt the category names themselves will change, 
-         but if so our references will not. 
+Purpose: The dataset validator categorizes its errors using the below categories. Keeping these as an enum
+         as they are referenced a lot in error parsing and translating code,
+         and limiting mistyping would be very beneficial. I doubt the category names themselves will change,
+         but if so our references will not.
          plus ça change, plus c'est la même chose
 */
 
diff --git a/sections/curate/curate.html b/sections/curate/curate.html
index 62af76aef..68d8e8d31 100644
--- a/sections/curate/curate.html
+++ b/sections/curate/curate.html
@@ -1283,7 +1283,7 @@ <h2 style="padding-left: 15px">
                     style="display: none"
                   ></span>
                   <!-- END -->
-                  
+
                   <div
                     id="items"
                     class="div-organize-items shared-folder-structure-element"
@@ -4894,4 +4894,4 @@ <h3 class="question-title">
       </button>
     </div>
   </main>
-</section>
\ No newline at end of file
+</section>
diff --git a/sections/post_curation/post_curation.html b/sections/post_curation/post_curation.html
index 5388b41cb..777e2d7d7 100644
--- a/sections/post_curation/post_curation.html
+++ b/sections/post_curation/post_curation.html
@@ -745,7 +745,7 @@ <h5 class="card-right bf-dataset-span" style="padding-left: 15px">None</h5>
                   >Pre-publishing checklist:
                   <i
                     class="fas fa-info-circle popover-tooltip"
-                    data-content="Use the pre-publishing checklist below to verify your dataset meets all of the SPARC requirements for a publishable dataset. 
+                    data-content="Use the pre-publishing checklist below to verify your dataset meets all of the SPARC requirements for a publishable dataset.
                                 Click on any missing checklist items and you will be navigated to where you may add that item. "
                     rel="popover"
                     data-html="true"
diff --git a/stories/assets/code-brackets.svg b/stories/assets/code-brackets.svg
index 73de94776..19c7826c8 100644
--- a/stories/assets/code-brackets.svg
+++ b/stories/assets/code-brackets.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/code-brackets</title><g id="illustration/code-brackets" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#87E6E5" d="M11.4139325,12 C11.7605938,12 12,12.5059743 12,13.3779712 L12,17.4951758 L6.43502246,23.3839989 C5.85499251,23.9978337 5.85499251,25.0021663 6.43502246,25.6160011 L12,31.5048242 L12,35.6220288 C12,36.4939606 11.7605228,37 11.4139325,37 C11.2725831,37 11.1134406,36.9158987 10.9453839,36.7379973 L0.435022463,25.6160011 C-0.145007488,25.0021663 -0.145007488,23.9978337 0.435022463,23.3839989 L10.9453839,12.2620027 C11.1134051,12.0841663 11.2725831,12 11.4139325,12 Z M36.5860675,12 C36.7274169,12 36.8865594,12.0841013 37.0546161,12.2620027 L47.5649775,23.3839989 C48.1450075,23.9978337 48.1450075,25.0021663 47.5649775,25.6160011 L37.0546161,36.7379973 C36.8865949,36.9158337 36.7274169,37 36.5860675,37 C36.2394062,37 36,36.4940257 36,35.6220288 L36,31.5048242 L41.5649775,25.6160011 C42.1450075,25.0021663 42.1450075,23.9978337 41.5649775,23.3839989 L36,17.4951758 L36,13.3779712 C36,12.5060394 36.2394772,12 36.5860675,12 Z"/><rect id="Rectangle-7-Copy-5" width="35.57" height="4" x="5.009" y="22.662" fill="#A0DB77" rx="2" transform="translate(22.793959, 24.662305) rotate(-75.000000) translate(-22.793959, -24.662305)"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/code-brackets</title><g id="illustration/code-brackets" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#87E6E5" d="M11.4139325,12 C11.7605938,12 12,12.5059743 12,13.3779712 L12,17.4951758 L6.43502246,23.3839989 C5.85499251,23.9978337 5.85499251,25.0021663 6.43502246,25.6160011 L12,31.5048242 L12,35.6220288 C12,36.4939606 11.7605228,37 11.4139325,37 C11.2725831,37 11.1134406,36.9158987 10.9453839,36.7379973 L0.435022463,25.6160011 C-0.145007488,25.0021663 -0.145007488,23.9978337 0.435022463,23.3839989 L10.9453839,12.2620027 C11.1134051,12.0841663 11.2725831,12 11.4139325,12 Z M36.5860675,12 C36.7274169,12 36.8865594,12.0841013 37.0546161,12.2620027 L47.5649775,23.3839989 C48.1450075,23.9978337 48.1450075,25.0021663 47.5649775,25.6160011 L37.0546161,36.7379973 C36.8865949,36.9158337 36.7274169,37 36.5860675,37 C36.2394062,37 36,36.4940257 36,35.6220288 L36,31.5048242 L41.5649775,25.6160011 C42.1450075,25.0021663 42.1450075,23.9978337 41.5649775,23.3839989 L36,17.4951758 L36,13.3779712 C36,12.5060394 36.2394772,12 36.5860675,12 Z"/><rect id="Rectangle-7-Copy-5" width="35.57" height="4" x="5.009" y="22.662" fill="#A0DB77" rx="2" transform="translate(22.793959, 24.662305) rotate(-75.000000) translate(-22.793959, -24.662305)"/></g></svg>
diff --git a/stories/assets/colors.svg b/stories/assets/colors.svg
index 17d58d516..bcfd39901 100644
--- a/stories/assets/colors.svg
+++ b/stories/assets/colors.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/colors</title><g id="illustration/colors" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><circle id="Oval" cx="23.763" cy="16.192" r="13.271" fill="#FC521F" opacity=".6"/><circle id="Oval-Copy" cx="15.468" cy="32.308" r="13.271" fill="#66BF3C" opacity=".6"/><path id="Combined-Shape" fill="#FF5F95" d="M15.4683651,19.0362231 C21.5434817,19.0362231 26.6652087,23.1181689 28.2404554,28.6889694 C26.8420385,29.1906678 25.3344184,29.4637769 23.7630101,29.4637769 C17.6878936,29.4637769 12.5661666,25.3818311 10.9909199,19.8110306 C12.3898993,19.3092302 13.8972501,19.0362231 15.4683651,19.0362231 Z"/><circle id="Oval-Copy-2" cx="32.532" cy="32.308" r="13.271" fill="#1EA7FD" opacity=".6"/><path id="Combined-Shape" fill="#87E6E5" d="M24.00025,22.1417324 C26.897967,24.5762286 28.7397972,28.2268506 28.7397972,32.3076552 C28.7397972,36.3884597 26.897967,40.0390817 24.00025,42.4735779 C21.1018087,40.038637 19.2602028,36.3882111 19.2602028,32.3076552 C19.2602028,28.2815316 21.0530043,24.6741393 23.8838362,22.2402492 Z"/><path id="Combined-Shape" fill="#FBD178" d="M32.5316349,19.0362231 C33.9415155,19.0362231 35.3000478,19.2560712 36.5748203,19.6633557 C35.0489179,25.3104816 29.8909911,29.4637769 23.7630101,29.4637769 C22.3527608,29.4637769 20.9938866,29.2438138 19.7188247,28.8363247 C21.2451195,23.1900077 26.403293,19.0362231 32.5316349,19.0362231 Z"/><path id="Combined-Shape" fill="#FFF" d="M24.00025,22.1417324 L24.0124326,22.1519799 C24.1747744,22.288701 24.3337918,22.4292434 24.4893463,22.5734686 L24.3896855,22.4820008 C24.4671836,22.552408 24.5438453,22.6237194 24.619654,22.6959185 L24.4893463,22.5734686 C24.5690639,22.6473803 24.6478719,22.7222591 24.7257519,22.7980864 L24.619654,22.6959185 C24.6907654,22.7636441 24.7611262,22.8321506 24.8307226,22.9014245 L24.7257519,22.7980864 C24.8120661,22.8821258 24.8972403,22.9673303 24.981249,23.0536745 L24.8307226,22.9014245 C24.9073006,22.9776475 24.9829531,23.0547994 25.0576619,23.132862 L25.057852,23.1330605 C25.3140855,23.4007967 25.559391,23.679459 25.7928375,23.9681079 L25.7230574,23.8825538 C25.7985998,23.9743942 25.8729325,24.0672672 25.9460311,24.1611484 L25.7928375,23.9681079 C25.8624256,24.0541514 25.93096,24.1410823 25.998421,24.228881 L25.9460311,24.1611484 C26.0074362,24.2400115 26.0679704,24.319586 26.1276194,24.3998576 L25.998421,24.228881 C26.0663495,24.317288 26.1331896,24.4065749 26.1989214,24.4967216 L26.1276194,24.3998576 C26.204848,24.5037867 26.2805926,24.6088841 26.3548219,24.7151187 L26.1989214,24.4967216 C26.2678555,24.59126 26.3355706,24.6867441 26.4020436,24.7831507 L26.3548219,24.7151187 C26.4130013,24.798383 26.4702498,24.8823459 26.5265523,24.9669921 L26.4020436,24.7831507 C26.4678788,24.8786322 26.5324956,24.9750187 26.5958716,25.0722875 L26.5959296,25.0723765 C26.736338,25.2878741 26.870709,25.5077955 26.9987399,25.7318073 L26.9410662,25.6319089 C26.9973106,25.7283602 27.0523736,25.8255849 27.1062352,25.9235633 L26.9987399,25.7318073 C27.0539848,25.8284676 27.1080492,25.9258895 27.1609136,26.0240532 L27.1606656,26.0235927 C27.2696676,26.2259984 27.3733426,26.4310837 27.4717677,26.6391379 L27.4715275,26.6386302 C27.5541941,26.8133735 27.6329386,26.9896914 27.7079006,27.1679911 C27.7630163,27.299081 27.8161443,27.431391 27.8671831,27.5647345 L27.804312,27.4036517 C27.8391482,27.4912057 27.8730792,27.5792182 27.9060936,27.6676774 L27.8671831,27.5647345 C27.906613,27.6677486 27.9447959,27.7713796 27.9817136,27.8756091 L27.9060936,27.6676774 C27.946474,27.7758735 27.9854831,27.884738 28.0230997,27.9942498 L27.9817136,27.8756091 C28.0144978,27.9681688 28.0462842,28.0612004 28.0770597,28.1546911 L28.0230997,27.9942498 C28.0618265,28.1069941 28.0990774,28.2204244 28.1348294,28.3345177 L28.0770597,28.1546911 C28.1112208,28.2584663 28.1441365,28.3628071 28.175789,28.4676958 L28.1756797,28.4673338 L28.2408136,28.6893554 C28.2284694,28.6937793 28.2161167,28.6981854 28.2037557,28.7025737 L28.2404554,28.6889694 C27.9517707,28.7925384 27.6584322,28.8863659 27.3608394,28.97006 L27.3609965,28.9702524 C27.0695498,29.0519815 26.7741843,29.1241944 26.4751174,29.1863314 L26.5385665,29.1730829 C26.3901218,29.2046704 26.2407589,29.2337757 26.0905233,29.2603535 L26.4751174,29.1863314 C26.3367402,29.215082 26.1975707,29.2416755 26.0576458,29.2660754 L26.0905233,29.2603535 C25.9366833,29.2875689 25.7819282,29.312134 25.6263069,29.334 L26.0576458,29.2660754 C25.9017815,29.2932549 25.7449801,29.3177127 25.5872928,29.3393985 L25.6263069,29.334 C25.493366,29.3526793 25.3597929,29.3693888 25.2256182,29.3840982 L25.5872928,29.3393985 C25.4326976,29.360659 25.277251,29.3792552 25.1210012,29.3951396 L25.2256182,29.3840982 C25.0570566,29.4025774 24.8875455,29.4178998 24.7171453,29.4300052 L25.1210012,29.3951396 C24.9661341,29.4108835 24.810478,29.4239634 24.6540799,29.4343333 L24.7171453,29.4300052 C24.5612618,29.4410793 24.4046342,29.4494611 24.2473088,29.4551045 L24.6540799,29.4343333 C24.5098436,29.4438967 24.3649762,29.4511552 24.2195147,29.4560724 L24.2473088,29.4551045 C24.0865878,29.4608697 23.9251385,29.4637769 23.7630101,29.4637769 L23.3130142,29.4562912 C23.2993121,29.4558347 23.2856153,29.4553574 23.2719237,29.4548593 C22.9596275,29.4434959 22.6502324,29.4213577 22.3439491,29.3888006 L22.3886972,29.3934808 C22.2468147,29.3788837 22.105595,29.3620515 21.9650736,29.3430199 L22.3439491,29.3888006 C22.1914515,29.3725905 22.0397254,29.3537976 21.8888152,29.3324664 L21.9650736,29.3430199 C21.8025527,29.3210088 21.6409661,29.2960557 21.4803691,29.2682161 L21.8888152,29.3324664 C21.7352182,29.3107553 21.5824665,29.2864149 21.4306071,29.2594919 L21.4803691,29.2682161 C21.3506285,29.2457255 21.2215338,29.221351 21.0931142,29.1951218 L21.4306071,29.2594919 C21.2772401,29.2323016 21.1247833,29.2024774 20.973285,29.1700676 L21.0931142,29.1951218 C20.9267071,29.1611338 20.7614335,29.1240315 20.5973571,29.0838786 L20.973285,29.1700676 C20.825476,29.138447 20.6785795,29.1043653 20.5326403,29.0678674 L20.5973571,29.0838786 C20.4596684,29.0501832 20.3228227,29.0143396 20.1868576,28.9763851 L20.5326403,29.0678674 C20.3930822,29.0329653 20.2543997,28.9958536 20.1166319,28.9565718 L20.1169729,28.956669 L19.7188247,28.8363247 L19.7188247,28.8363247 L19.7880988,28.5894836 C19.8166627,28.4914193 19.8463277,28.3938241 19.8770797,28.2967124 L19.8480041,28.389868 C19.888904,28.2573207 19.931824,28.1256601 19.9767281,27.9949221 L19.8770797,28.2967124 C19.9117081,28.1873592 19.9477148,28.0786191 19.9850793,27.9705124 L19.9853117,27.9700125 C20.1152243,27.5939638 20.2618428,27.2250995 20.4240731,26.8647811 L20.345088,27.0439391 C20.3899401,26.9402428 20.4360767,26.8372321 20.4834778,26.7349269 L20.4240731,26.8647811 C20.461061,26.78263 20.4988604,26.7009231 20.5374612,26.6196707 L20.4834778,26.7349269 C20.5344734,26.6248636 20.5869326,26.515617 20.6408302,26.4072119 L20.5374612,26.6196707 C20.5871241,26.5151329 20.6381134,26.4113474 20.6904074,26.308336 L20.6408302,26.4072119 C20.681671,26.3250682 20.7233378,26.2434076 20.7658197,26.1622412 L20.7658807,26.1619302 C20.8435258,26.013775 20.923959,25.866962 21.0070529,25.7218685 C21.2050227,25.3759931 21.4182299,25.0398756 21.6456589,24.7144306 L21.5286537,24.8848257 C21.5876708,24.7975143 21.6476996,24.7109431 21.7087233,24.6251289 L21.6456589,24.7144306 C21.6993229,24.6376387 21.7537788,24.5614411 21.8090146,24.4858495 L21.7087233,24.6251289 C21.7826333,24.5211934 21.8580028,24.4183683 21.9348018,24.3166836 L21.8090146,24.4858495 C21.8722751,24.3992759 21.9365587,24.3134973 22.0018475,24.2285315 L22.0016895,24.2288802 C22.3179789,23.8171232 22.6576794,23.4247699 23.0189296,23.053491 L22.8296293,23.2521975 C22.9033796,23.1732135 22.9780829,23.095131 23.0537208,23.0179683 L23.0189296,23.053491 C23.083529,22.9870982 23.1488175,22.9213793 23.2147836,22.8563459 L23.0537208,23.0179683 C23.131055,22.9390752 23.2093662,22.8611436 23.2886348,22.7841931 L23.2147836,22.8563459 C23.2821211,22.7899605 23.3501645,22.7242893 23.4189017,22.6593447 L23.2886348,22.7841931 C23.3852399,22.6904132 23.4832671,22.5980904 23.582681,22.5072602 L23.4189017,22.6593447 C23.4912637,22.5909753 23.5643945,22.523411 23.6382797,22.4566663 L23.582681,22.5072602 C23.6715916,22.4260264 23.7616113,22.3459865 23.8527148,22.2671658 L23.8525967,22.2671923 C23.8915062,22.2336043 23.9304941,22.2002638 23.9696766,22.1671464 L24.00025,22.1417324 Z"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/colors</title><g id="illustration/colors" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><circle id="Oval" cx="23.763" cy="16.192" r="13.271" fill="#FC521F" opacity=".6"/><circle id="Oval-Copy" cx="15.468" cy="32.308" r="13.271" fill="#66BF3C" opacity=".6"/><path id="Combined-Shape" fill="#FF5F95" d="M15.4683651,19.0362231 C21.5434817,19.0362231 26.6652087,23.1181689 28.2404554,28.6889694 C26.8420385,29.1906678 25.3344184,29.4637769 23.7630101,29.4637769 C17.6878936,29.4637769 12.5661666,25.3818311 10.9909199,19.8110306 C12.3898993,19.3092302 13.8972501,19.0362231 15.4683651,19.0362231 Z"/><circle id="Oval-Copy-2" cx="32.532" cy="32.308" r="13.271" fill="#1EA7FD" opacity=".6"/><path id="Combined-Shape" fill="#87E6E5" d="M24.00025,22.1417324 C26.897967,24.5762286 28.7397972,28.2268506 28.7397972,32.3076552 C28.7397972,36.3884597 26.897967,40.0390817 24.00025,42.4735779 C21.1018087,40.038637 19.2602028,36.3882111 19.2602028,32.3076552 C19.2602028,28.2815316 21.0530043,24.6741393 23.8838362,22.2402492 Z"/><path id="Combined-Shape" fill="#FBD178" d="M32.5316349,19.0362231 C33.9415155,19.0362231 35.3000478,19.2560712 36.5748203,19.6633557 C35.0489179,25.3104816 29.8909911,29.4637769 23.7630101,29.4637769 C22.3527608,29.4637769 20.9938866,29.2438138 19.7188247,28.8363247 C21.2451195,23.1900077 26.403293,19.0362231 32.5316349,19.0362231 Z"/><path id="Combined-Shape" fill="#FFF" d="M24.00025,22.1417324 L24.0124326,22.1519799 C24.1747744,22.288701 24.3337918,22.4292434 24.4893463,22.5734686 L24.3896855,22.4820008 C24.4671836,22.552408 24.5438453,22.6237194 24.619654,22.6959185 L24.4893463,22.5734686 C24.5690639,22.6473803 24.6478719,22.7222591 24.7257519,22.7980864 L24.619654,22.6959185 C24.6907654,22.7636441 24.7611262,22.8321506 24.8307226,22.9014245 L24.7257519,22.7980864 C24.8120661,22.8821258 24.8972403,22.9673303 24.981249,23.0536745 L24.8307226,22.9014245 C24.9073006,22.9776475 24.9829531,23.0547994 25.0576619,23.132862 L25.057852,23.1330605 C25.3140855,23.4007967 25.559391,23.679459 25.7928375,23.9681079 L25.7230574,23.8825538 C25.7985998,23.9743942 25.8729325,24.0672672 25.9460311,24.1611484 L25.7928375,23.9681079 C25.8624256,24.0541514 25.93096,24.1410823 25.998421,24.228881 L25.9460311,24.1611484 C26.0074362,24.2400115 26.0679704,24.319586 26.1276194,24.3998576 L25.998421,24.228881 C26.0663495,24.317288 26.1331896,24.4065749 26.1989214,24.4967216 L26.1276194,24.3998576 C26.204848,24.5037867 26.2805926,24.6088841 26.3548219,24.7151187 L26.1989214,24.4967216 C26.2678555,24.59126 26.3355706,24.6867441 26.4020436,24.7831507 L26.3548219,24.7151187 C26.4130013,24.798383 26.4702498,24.8823459 26.5265523,24.9669921 L26.4020436,24.7831507 C26.4678788,24.8786322 26.5324956,24.9750187 26.5958716,25.0722875 L26.5959296,25.0723765 C26.736338,25.2878741 26.870709,25.5077955 26.9987399,25.7318073 L26.9410662,25.6319089 C26.9973106,25.7283602 27.0523736,25.8255849 27.1062352,25.9235633 L26.9987399,25.7318073 C27.0539848,25.8284676 27.1080492,25.9258895 27.1609136,26.0240532 L27.1606656,26.0235927 C27.2696676,26.2259984 27.3733426,26.4310837 27.4717677,26.6391379 L27.4715275,26.6386302 C27.5541941,26.8133735 27.6329386,26.9896914 27.7079006,27.1679911 C27.7630163,27.299081 27.8161443,27.431391 27.8671831,27.5647345 L27.804312,27.4036517 C27.8391482,27.4912057 27.8730792,27.5792182 27.9060936,27.6676774 L27.8671831,27.5647345 C27.906613,27.6677486 27.9447959,27.7713796 27.9817136,27.8756091 L27.9060936,27.6676774 C27.946474,27.7758735 27.9854831,27.884738 28.0230997,27.9942498 L27.9817136,27.8756091 C28.0144978,27.9681688 28.0462842,28.0612004 28.0770597,28.1546911 L28.0230997,27.9942498 C28.0618265,28.1069941 28.0990774,28.2204244 28.1348294,28.3345177 L28.0770597,28.1546911 C28.1112208,28.2584663 28.1441365,28.3628071 28.175789,28.4676958 L28.1756797,28.4673338 L28.2408136,28.6893554 C28.2284694,28.6937793 28.2161167,28.6981854 28.2037557,28.7025737 L28.2404554,28.6889694 C27.9517707,28.7925384 27.6584322,28.8863659 27.3608394,28.97006 L27.3609965,28.9702524 C27.0695498,29.0519815 26.7741843,29.1241944 26.4751174,29.1863314 L26.5385665,29.1730829 C26.3901218,29.2046704 26.2407589,29.2337757 26.0905233,29.2603535 L26.4751174,29.1863314 C26.3367402,29.215082 26.1975707,29.2416755 26.0576458,29.2660754 L26.0905233,29.2603535 C25.9366833,29.2875689 25.7819282,29.312134 25.6263069,29.334 L26.0576458,29.2660754 C25.9017815,29.2932549 25.7449801,29.3177127 25.5872928,29.3393985 L25.6263069,29.334 C25.493366,29.3526793 25.3597929,29.3693888 25.2256182,29.3840982 L25.5872928,29.3393985 C25.4326976,29.360659 25.277251,29.3792552 25.1210012,29.3951396 L25.2256182,29.3840982 C25.0570566,29.4025774 24.8875455,29.4178998 24.7171453,29.4300052 L25.1210012,29.3951396 C24.9661341,29.4108835 24.810478,29.4239634 24.6540799,29.4343333 L24.7171453,29.4300052 C24.5612618,29.4410793 24.4046342,29.4494611 24.2473088,29.4551045 L24.6540799,29.4343333 C24.5098436,29.4438967 24.3649762,29.4511552 24.2195147,29.4560724 L24.2473088,29.4551045 C24.0865878,29.4608697 23.9251385,29.4637769 23.7630101,29.4637769 L23.3130142,29.4562912 C23.2993121,29.4558347 23.2856153,29.4553574 23.2719237,29.4548593 C22.9596275,29.4434959 22.6502324,29.4213577 22.3439491,29.3888006 L22.3886972,29.3934808 C22.2468147,29.3788837 22.105595,29.3620515 21.9650736,29.3430199 L22.3439491,29.3888006 C22.1914515,29.3725905 22.0397254,29.3537976 21.8888152,29.3324664 L21.9650736,29.3430199 C21.8025527,29.3210088 21.6409661,29.2960557 21.4803691,29.2682161 L21.8888152,29.3324664 C21.7352182,29.3107553 21.5824665,29.2864149 21.4306071,29.2594919 L21.4803691,29.2682161 C21.3506285,29.2457255 21.2215338,29.221351 21.0931142,29.1951218 L21.4306071,29.2594919 C21.2772401,29.2323016 21.1247833,29.2024774 20.973285,29.1700676 L21.0931142,29.1951218 C20.9267071,29.1611338 20.7614335,29.1240315 20.5973571,29.0838786 L20.973285,29.1700676 C20.825476,29.138447 20.6785795,29.1043653 20.5326403,29.0678674 L20.5973571,29.0838786 C20.4596684,29.0501832 20.3228227,29.0143396 20.1868576,28.9763851 L20.5326403,29.0678674 C20.3930822,29.0329653 20.2543997,28.9958536 20.1166319,28.9565718 L20.1169729,28.956669 L19.7188247,28.8363247 L19.7188247,28.8363247 L19.7880988,28.5894836 C19.8166627,28.4914193 19.8463277,28.3938241 19.8770797,28.2967124 L19.8480041,28.389868 C19.888904,28.2573207 19.931824,28.1256601 19.9767281,27.9949221 L19.8770797,28.2967124 C19.9117081,28.1873592 19.9477148,28.0786191 19.9850793,27.9705124 L19.9853117,27.9700125 C20.1152243,27.5939638 20.2618428,27.2250995 20.4240731,26.8647811 L20.345088,27.0439391 C20.3899401,26.9402428 20.4360767,26.8372321 20.4834778,26.7349269 L20.4240731,26.8647811 C20.461061,26.78263 20.4988604,26.7009231 20.5374612,26.6196707 L20.4834778,26.7349269 C20.5344734,26.6248636 20.5869326,26.515617 20.6408302,26.4072119 L20.5374612,26.6196707 C20.5871241,26.5151329 20.6381134,26.4113474 20.6904074,26.308336 L20.6408302,26.4072119 C20.681671,26.3250682 20.7233378,26.2434076 20.7658197,26.1622412 L20.7658807,26.1619302 C20.8435258,26.013775 20.923959,25.866962 21.0070529,25.7218685 C21.2050227,25.3759931 21.4182299,25.0398756 21.6456589,24.7144306 L21.5286537,24.8848257 C21.5876708,24.7975143 21.6476996,24.7109431 21.7087233,24.6251289 L21.6456589,24.7144306 C21.6993229,24.6376387 21.7537788,24.5614411 21.8090146,24.4858495 L21.7087233,24.6251289 C21.7826333,24.5211934 21.8580028,24.4183683 21.9348018,24.3166836 L21.8090146,24.4858495 C21.8722751,24.3992759 21.9365587,24.3134973 22.0018475,24.2285315 L22.0016895,24.2288802 C22.3179789,23.8171232 22.6576794,23.4247699 23.0189296,23.053491 L22.8296293,23.2521975 C22.9033796,23.1732135 22.9780829,23.095131 23.0537208,23.0179683 L23.0189296,23.053491 C23.083529,22.9870982 23.1488175,22.9213793 23.2147836,22.8563459 L23.0537208,23.0179683 C23.131055,22.9390752 23.2093662,22.8611436 23.2886348,22.7841931 L23.2147836,22.8563459 C23.2821211,22.7899605 23.3501645,22.7242893 23.4189017,22.6593447 L23.2886348,22.7841931 C23.3852399,22.6904132 23.4832671,22.5980904 23.582681,22.5072602 L23.4189017,22.6593447 C23.4912637,22.5909753 23.5643945,22.523411 23.6382797,22.4566663 L23.582681,22.5072602 C23.6715916,22.4260264 23.7616113,22.3459865 23.8527148,22.2671658 L23.8525967,22.2671923 C23.8915062,22.2336043 23.9304941,22.2002638 23.9696766,22.1671464 L24.00025,22.1417324 Z"/></g></svg>
diff --git a/stories/assets/comments.svg b/stories/assets/comments.svg
index 6493a139f..be4f20a00 100644
--- a/stories/assets/comments.svg
+++ b/stories/assets/comments.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/comments</title><g id="illustration/comments" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Path" fill="#96D07C" d="M2.52730803,17.9196415 C2.44329744,17.9745167 2.36370847,18.000488 2.29303375,18.000488 C2.1197031,18.000488 2,17.8443588 2,17.5752855 L2,4 C2,1.790861 3.790861,3.23296945e-13 6,3.23296945e-13 L33.9995117,3.23296945e-13 C36.2086507,3.23296945e-13 37.9995117,1.790861 37.9995117,4 L37.9995117,9.999512 C37.9995117,12.208651 36.2086507,13.999512 33.9995117,13.999512 L8,13.999512 C7.83499225,13.999512 7.6723181,13.9895206 7.51254954,13.9701099 L2.52730803,17.9196415 Z"/><path id="Path" fill="#73E1E0" d="M7.51066,44.9703679 L2.52730803,47.9186655 C2.44329744,47.9735407 2.36370847,47.999512 2.29303375,47.999512 C2.1197031,47.999512 2,47.8433828 2,47.5743095 L2,35 C2,32.790861 3.790861,31 6,31 L26,31 C28.209139,31 30,32.790861 30,35 L30,41 C30,43.209139 28.209139,45 26,45 L8,45 C7.8343417,45 7.67103544,44.9899297 7.51066,44.9703679 Z"/><path id="Path" fill="#FFD476" d="M46,19.5 L46,33.0747975 C46,33.3438708 45.8802969,33.5 45.7069663,33.5 C45.6362915,33.5 45.5567026,33.4740287 45.472692,33.4191535 L40.4887103,29.4704446 C40.3285371,29.489956 40.1654415,29.5 40,29.5 L18,29.5 C15.790861,29.5 14,27.709139 14,25.5 L14,19.5 C14,17.290861 15.790861,15.5 18,15.5 L42,15.5 C44.209139,15.5 46,17.290861 46,19.5 Z"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/comments</title><g id="illustration/comments" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Path" fill="#96D07C" d="M2.52730803,17.9196415 C2.44329744,17.9745167 2.36370847,18.000488 2.29303375,18.000488 C2.1197031,18.000488 2,17.8443588 2,17.5752855 L2,4 C2,1.790861 3.790861,3.23296945e-13 6,3.23296945e-13 L33.9995117,3.23296945e-13 C36.2086507,3.23296945e-13 37.9995117,1.790861 37.9995117,4 L37.9995117,9.999512 C37.9995117,12.208651 36.2086507,13.999512 33.9995117,13.999512 L8,13.999512 C7.83499225,13.999512 7.6723181,13.9895206 7.51254954,13.9701099 L2.52730803,17.9196415 Z"/><path id="Path" fill="#73E1E0" d="M7.51066,44.9703679 L2.52730803,47.9186655 C2.44329744,47.9735407 2.36370847,47.999512 2.29303375,47.999512 C2.1197031,47.999512 2,47.8433828 2,47.5743095 L2,35 C2,32.790861 3.790861,31 6,31 L26,31 C28.209139,31 30,32.790861 30,35 L30,41 C30,43.209139 28.209139,45 26,45 L8,45 C7.8343417,45 7.67103544,44.9899297 7.51066,44.9703679 Z"/><path id="Path" fill="#FFD476" d="M46,19.5 L46,33.0747975 C46,33.3438708 45.8802969,33.5 45.7069663,33.5 C45.6362915,33.5 45.5567026,33.4740287 45.472692,33.4191535 L40.4887103,29.4704446 C40.3285371,29.489956 40.1654415,29.5 40,29.5 L18,29.5 C15.790861,29.5 14,27.709139 14,25.5 L14,19.5 C14,17.290861 15.790861,15.5 18,15.5 L42,15.5 C44.209139,15.5 46,17.290861 46,19.5 Z"/></g></svg>
diff --git a/stories/assets/direction.svg b/stories/assets/direction.svg
index 65676ac27..933ab2443 100644
--- a/stories/assets/direction.svg
+++ b/stories/assets/direction.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/direction</title><g id="illustration/direction" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#FFD476" d="M23.4917015,33.6030641 L2.93840258,31.4321033 C2.38917316,31.3740904 1.99096346,30.8818233 2.04897631,30.3325939 C2.0747515,30.0885705 2.18934861,29.8625419 2.37095722,29.6975265 L34.2609105,0.721285325 C34.6696614,0.349881049 35.3021022,0.38015648 35.6735064,0.788907393 C35.9232621,1.06377731 36.0001133,1.45442096 35.8730901,1.80341447 L24.5364357,32.9506164 C24.3793473,33.3822133 23.9484565,33.6513092 23.4917015,33.6030641 L23.4917015,33.6030641 Z"/><path id="Combined-Shape-Copy" fill="#FFC445" d="M24.3163597,33.2881029 C24.0306575,33.0138462 23.9337246,32.5968232 24.069176,32.2246735 L35.091923,1.9399251 C35.2266075,1.56988243 35.5659249,1.31333613 35.9586669,1.28460955 C36.5094802,1.24432106 36.9886628,1.65818318 37.0289513,2.20899647 L40.2437557,46.1609256 C40.2644355,46.4436546 40.1641446,46.7218752 39.9678293,46.9263833 C39.5853672,47.3248067 38.9523344,47.3377458 38.5539111,46.9552837 L24.3163597,33.2881029 L24.3163597,33.2881029 Z"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/direction</title><g id="illustration/direction" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#FFD476" d="M23.4917015,33.6030641 L2.93840258,31.4321033 C2.38917316,31.3740904 1.99096346,30.8818233 2.04897631,30.3325939 C2.0747515,30.0885705 2.18934861,29.8625419 2.37095722,29.6975265 L34.2609105,0.721285325 C34.6696614,0.349881049 35.3021022,0.38015648 35.6735064,0.788907393 C35.9232621,1.06377731 36.0001133,1.45442096 35.8730901,1.80341447 L24.5364357,32.9506164 C24.3793473,33.3822133 23.9484565,33.6513092 23.4917015,33.6030641 L23.4917015,33.6030641 Z"/><path id="Combined-Shape-Copy" fill="#FFC445" d="M24.3163597,33.2881029 C24.0306575,33.0138462 23.9337246,32.5968232 24.069176,32.2246735 L35.091923,1.9399251 C35.2266075,1.56988243 35.5659249,1.31333613 35.9586669,1.28460955 C36.5094802,1.24432106 36.9886628,1.65818318 37.0289513,2.20899647 L40.2437557,46.1609256 C40.2644355,46.4436546 40.1641446,46.7218752 39.9678293,46.9263833 C39.5853672,47.3248067 38.9523344,47.3377458 38.5539111,46.9552837 L24.3163597,33.2881029 L24.3163597,33.2881029 Z"/></g></svg>
diff --git a/stories/assets/flow.svg b/stories/assets/flow.svg
index 8ac27db40..5467a7012 100644
--- a/stories/assets/flow.svg
+++ b/stories/assets/flow.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/flow</title><g id="illustration/flow" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#79C9FC" fill-rule="nonzero" d="M30,29 C32.7614237,29 35,26.7614237 35,24 C35,14.6111593 27.3888407,7 18,7 C8.61115925,7 1,14.6111593 1,24 C1,33.3888407 8.61115925,41 18,41 C19.3333404,41 20.6447683,40.8466238 21.9154603,40.5471706 C19.5096374,39.3319645 17.5510566,37.8612875 16.0456579,36.1314815 C14.1063138,33.9030427 12.769443,31.0725999 12.0293806,27.6556449 C11.360469,26.565281 11,25.3082308 11,24 C11,20.1340068 14.1340068,17 18,17 C21.8659932,17 25,20.1340068 25,24 C25,26.125 27.7040312,29 30,29 Z"/><path id="Combined-Shape-Copy" fill="#FFC445" fill-rule="nonzero" d="M42,29 C44.7614237,29 47,26.7614237 47,24 C47,14.6111593 39.3888407,7 30,7 C20.6111593,7 13,14.6111593 13,24 C13,33.3888407 20.6111593,41 30,41 C31.3333404,41 32.6447683,40.8466238 33.9154603,40.5471706 C31.5096374,39.3319645 29.4051056,37.9781963 28.0456579,36.1314815 C26.0625,33.4375 23,27.1875 23,24 C23,20.1340068 26.1340068,17 30,17 C33.8659932,17 37,20.1340068 37,24 C37.02301,26.3435241 39.7040312,29 42,29 Z" transform="translate(30.000000, 24.000000) scale(-1, -1) translate(-30.000000, -24.000000)"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/flow</title><g id="illustration/flow" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#79C9FC" fill-rule="nonzero" d="M30,29 C32.7614237,29 35,26.7614237 35,24 C35,14.6111593 27.3888407,7 18,7 C8.61115925,7 1,14.6111593 1,24 C1,33.3888407 8.61115925,41 18,41 C19.3333404,41 20.6447683,40.8466238 21.9154603,40.5471706 C19.5096374,39.3319645 17.5510566,37.8612875 16.0456579,36.1314815 C14.1063138,33.9030427 12.769443,31.0725999 12.0293806,27.6556449 C11.360469,26.565281 11,25.3082308 11,24 C11,20.1340068 14.1340068,17 18,17 C21.8659932,17 25,20.1340068 25,24 C25,26.125 27.7040312,29 30,29 Z"/><path id="Combined-Shape-Copy" fill="#FFC445" fill-rule="nonzero" d="M42,29 C44.7614237,29 47,26.7614237 47,24 C47,14.6111593 39.3888407,7 30,7 C20.6111593,7 13,14.6111593 13,24 C13,33.3888407 20.6111593,41 30,41 C31.3333404,41 32.6447683,40.8466238 33.9154603,40.5471706 C31.5096374,39.3319645 29.4051056,37.9781963 28.0456579,36.1314815 C26.0625,33.4375 23,27.1875 23,24 C23,20.1340068 26.1340068,17 30,17 C33.8659932,17 37,20.1340068 37,24 C37.02301,26.3435241 39.7040312,29 42,29 Z" transform="translate(30.000000, 24.000000) scale(-1, -1) translate(-30.000000, -24.000000)"/></g></svg>
diff --git a/stories/assets/plugin.svg b/stories/assets/plugin.svg
index 29e5c690c..8bc9ca193 100644
--- a/stories/assets/plugin.svg
+++ b/stories/assets/plugin.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/plugin</title><g id="illustration/plugin" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#79C9FC" d="M26,15.3994248 C26,15.4091303 26,15.4188459 26,15.4285714 L26,21.4694881 C25.8463595,21.4969567 25.6941676,21.51275 25.5873784,21.51275 C25.4974117,21.51275 25.4230979,21.4768034 25.377756,21.4206259 L25.2660784,21.2822603 L25.1317423,21.1657666 C24.2436317,20.3956144 23.100098,19.9633214 21.895551,19.9633214 C19.2039137,19.9633214 17,22.1075558 17,24.7804643 C17,27.4533728 19.2039137,29.5976071 21.895551,29.5976071 C23.1972122,29.5976071 24.3149423,29.2878193 25.1231445,28.3613697 C25.4542273,27.9818463 25.568273,27.9073214 25.5873784,27.9073214 C25.681532,27.9073214 25.8352452,27.9239643 26,27.9524591 L26,32.5714286 C26,32.5811541 26,32.5908697 26,32.6005752 L26,33 C26,35.209139 24.209139,37 22,37 L4,37 C1.790861,37 0,35.209139 0,33 L0,15 C0,12.790861 1.790861,11 4,11 L22,11 C24.209139,11 26,12.790861 26,15 L26,15.3994248 Z"/><path id="Path" fill="#87E6E5" d="M27.9998779,32.5714286 C27.9998779,33.3604068 28.6572726,34 29.4682101,34 L46.5315458,34 C47.3424832,34 47.9998779,33.3604068 47.9998779,32.5714286 L47.9998779,15.4285714 C47.9998779,14.6395932 47.3424832,14 46.5315458,14 L29.4682101,14 C28.6572726,14 27.9998779,14.6395932 27.9998779,15.4285714 L27.9998779,21.8355216 C27.9334367,22.2650514 27.8567585,22.6454496 27.746391,22.8084643 C27.4245309,23.2838571 26.2402709,23.51275 25.5873784,23.51275 C24.8705773,23.51275 24.2322714,23.1857725 23.8214379,22.6767605 C23.3096996,22.2329909 22.6349941,21.9633214 21.895551,21.9633214 C20.2963823,21.9633214 19,23.2245992 19,24.7804643 C19,26.3363293 20.2963823,27.5976071 21.895551,27.5976071 C22.5398535,27.5976071 23.2399343,27.477727 23.6160247,27.0466112 C24.1396029,26.4464286 24.7367044,25.9073214 25.5873784,25.9073214 C26.2402709,25.9073214 27.5912951,26.1766031 27.8226692,26.6116071 C27.8819199,26.7230038 27.9403239,26.921677 27.9998779,27.1556219 L27.9998779,32.5714286 Z"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/plugin</title><g id="illustration/plugin" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#79C9FC" d="M26,15.3994248 C26,15.4091303 26,15.4188459 26,15.4285714 L26,21.4694881 C25.8463595,21.4969567 25.6941676,21.51275 25.5873784,21.51275 C25.4974117,21.51275 25.4230979,21.4768034 25.377756,21.4206259 L25.2660784,21.2822603 L25.1317423,21.1657666 C24.2436317,20.3956144 23.100098,19.9633214 21.895551,19.9633214 C19.2039137,19.9633214 17,22.1075558 17,24.7804643 C17,27.4533728 19.2039137,29.5976071 21.895551,29.5976071 C23.1972122,29.5976071 24.3149423,29.2878193 25.1231445,28.3613697 C25.4542273,27.9818463 25.568273,27.9073214 25.5873784,27.9073214 C25.681532,27.9073214 25.8352452,27.9239643 26,27.9524591 L26,32.5714286 C26,32.5811541 26,32.5908697 26,32.6005752 L26,33 C26,35.209139 24.209139,37 22,37 L4,37 C1.790861,37 0,35.209139 0,33 L0,15 C0,12.790861 1.790861,11 4,11 L22,11 C24.209139,11 26,12.790861 26,15 L26,15.3994248 Z"/><path id="Path" fill="#87E6E5" d="M27.9998779,32.5714286 C27.9998779,33.3604068 28.6572726,34 29.4682101,34 L46.5315458,34 C47.3424832,34 47.9998779,33.3604068 47.9998779,32.5714286 L47.9998779,15.4285714 C47.9998779,14.6395932 47.3424832,14 46.5315458,14 L29.4682101,14 C28.6572726,14 27.9998779,14.6395932 27.9998779,15.4285714 L27.9998779,21.8355216 C27.9334367,22.2650514 27.8567585,22.6454496 27.746391,22.8084643 C27.4245309,23.2838571 26.2402709,23.51275 25.5873784,23.51275 C24.8705773,23.51275 24.2322714,23.1857725 23.8214379,22.6767605 C23.3096996,22.2329909 22.6349941,21.9633214 21.895551,21.9633214 C20.2963823,21.9633214 19,23.2245992 19,24.7804643 C19,26.3363293 20.2963823,27.5976071 21.895551,27.5976071 C22.5398535,27.5976071 23.2399343,27.477727 23.6160247,27.0466112 C24.1396029,26.4464286 24.7367044,25.9073214 25.5873784,25.9073214 C26.2402709,25.9073214 27.5912951,26.1766031 27.8226692,26.6116071 C27.8819199,26.7230038 27.9403239,26.921677 27.9998779,27.1556219 L27.9998779,32.5714286 Z"/></g></svg>
diff --git a/stories/assets/repo.svg b/stories/assets/repo.svg
index f386ee902..a906e675b 100644
--- a/stories/assets/repo.svg
+++ b/stories/assets/repo.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/repo</title><g id="illustration/repo" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Rectangle-62-Copy" fill="#B7F0EF" d="M27.2217723,9.04506931 L41.2217723,6.2682098 C43.3886973,5.83840648 45.4937616,7.2466219 45.9235649,9.41354696 C45.9743993,9.66983721 46,9.93049166 46,10.1917747 L46,32.581381 C46,34.4904961 44.650862,36.1335143 42.7782277,36.5049459 L28.7782277,39.2818054 C26.6113027,39.7116087 24.5062384,38.3033933 24.0764351,36.1364682 C24.0256007,35.880178 24,35.6195235 24,35.3582405 L24,12.9686342 C24,11.0595191 25.349138,9.4165009 27.2217723,9.04506931 Z" opacity=".7"/><path id="Combined-Shape" fill="#87E6E5" d="M6.77822775,6.2682098 L20.7782277,9.04506931 C22.650862,9.4165009 24,11.0595191 24,12.9686342 L24,35.3582405 C24,37.5673795 22.209139,39.3582405 20,39.3582405 C19.738717,39.3582405 19.4780625,39.3326398 19.2217723,39.2818054 L5.22177225,36.5049459 C3.34913798,36.1335143 2,34.4904961 2,32.581381 L2,10.1917747 C2,7.98263571 3.790861,6.19177471 6,6.19177471 C6.26128305,6.19177471 6.5219375,6.21737537 6.77822775,6.2682098 Z"/><path id="Rectangle-63-Copy-2" fill="#61C1FD" d="M22,10 C23.1666667,10.2291667 24.0179036,10.625 24.5537109,11.1875 C25.0895182,11.75 25.5716146,12.875 26,14.5625 C26,29.3020833 26,37.5208333 26,39.21875 C26,40.9166667 26.4241536,42.9583333 27.2724609,45.34375 L24.5537109,41.875 L22.9824219,45.34375 C22.327474,43.1979167 22,41.2291667 22,39.4375 C22,37.6458333 22,27.8333333 22,10 Z"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/repo</title><g id="illustration/repo" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Rectangle-62-Copy" fill="#B7F0EF" d="M27.2217723,9.04506931 L41.2217723,6.2682098 C43.3886973,5.83840648 45.4937616,7.2466219 45.9235649,9.41354696 C45.9743993,9.66983721 46,9.93049166 46,10.1917747 L46,32.581381 C46,34.4904961 44.650862,36.1335143 42.7782277,36.5049459 L28.7782277,39.2818054 C26.6113027,39.7116087 24.5062384,38.3033933 24.0764351,36.1364682 C24.0256007,35.880178 24,35.6195235 24,35.3582405 L24,12.9686342 C24,11.0595191 25.349138,9.4165009 27.2217723,9.04506931 Z" opacity=".7"/><path id="Combined-Shape" fill="#87E6E5" d="M6.77822775,6.2682098 L20.7782277,9.04506931 C22.650862,9.4165009 24,11.0595191 24,12.9686342 L24,35.3582405 C24,37.5673795 22.209139,39.3582405 20,39.3582405 C19.738717,39.3582405 19.4780625,39.3326398 19.2217723,39.2818054 L5.22177225,36.5049459 C3.34913798,36.1335143 2,34.4904961 2,32.581381 L2,10.1917747 C2,7.98263571 3.790861,6.19177471 6,6.19177471 C6.26128305,6.19177471 6.5219375,6.21737537 6.77822775,6.2682098 Z"/><path id="Rectangle-63-Copy-2" fill="#61C1FD" d="M22,10 C23.1666667,10.2291667 24.0179036,10.625 24.5537109,11.1875 C25.0895182,11.75 25.5716146,12.875 26,14.5625 C26,29.3020833 26,37.5208333 26,39.21875 C26,40.9166667 26.4241536,42.9583333 27.2724609,45.34375 L24.5537109,41.875 L22.9824219,45.34375 C22.327474,43.1979167 22,41.2291667 22,39.4375 C22,37.6458333 22,27.8333333 22,10 Z"/></g></svg>
diff --git a/stories/assets/stackalt.svg b/stories/assets/stackalt.svg
index 9b7ad2743..7746eb31a 100644
--- a/stories/assets/stackalt.svg
+++ b/stories/assets/stackalt.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/stackalt</title><g id="illustration/stackalt" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#FFAE00" d="M23.8628277,0 L23.8628277,48 L3.32291648,36.2491883 L3.32155653,11.9499781 L23.8628277,0 Z M23.8670509,0 L44.408322,11.9499781 L44.4069621,36.2491883 L23.8670509,48 L23.8670509,0 Z" opacity=".196"/><path id="Rectangle-46-Copy-3" fill="#66BF3C" d="M15.8232279,19.1155258 L24.7368455,21.4714881 C29.6053842,22.7582937 33.4077423,26.5606518 34.694548,31.4291905 L37.0505103,40.3428082 C37.6150232,42.4786032 36.3412474,44.6676353 34.2054524,45.2321482 C33.5569474,45.4035549 32.87575,45.4091235 32.2245294,45.2483418 L23.3459013,43.0562718 C18.2976962,41.809906 14.3561301,37.8683399 13.1097642,32.8201348 L10.9176943,23.9415066 C10.3881737,21.7967682 11.6975664,19.6288529 13.8423049,19.0993322 C14.4935255,18.9385505 15.1747229,18.9441191 15.8232279,19.1155258 Z" opacity=".5" transform="translate(23.999997, 32.166058) rotate(-45.000000) translate(-23.999997, -32.166058)"/><path id="Rectangle-46-Copy-2" fill="#FFAE00" d="M15.8232279,11.2216893 L24.7368455,13.5776516 C29.6053842,14.8644572 33.4077423,18.6668153 34.694548,23.5353541 L37.0505103,32.4489717 C37.6150232,34.5847667 36.3412474,36.7737988 34.2054524,37.3383117 C33.5569474,37.5097184 32.87575,37.515287 32.2245294,37.3545053 L23.3459013,35.1624353 C18.2976962,33.9160695 14.3561301,29.9745034 13.1097642,24.9262983 L10.9176943,16.0476701 C10.3881737,13.9029317 11.6975664,11.7350164 13.8423049,11.2054957 C14.4935255,11.044714 15.1747229,11.0502826 15.8232279,11.2216893 Z" opacity=".5" transform="translate(23.999997, 24.272222) rotate(-45.000000) translate(-23.999997, -24.272222)"/><path id="Rectangle-46-Copy" fill="#FC521F" d="M15.8232279,3.32785281 L24.7368455,5.68381509 C29.6053842,6.97062075 33.4077423,10.7729788 34.694548,15.6415176 L37.0505103,24.5551352 C37.6150232,26.6909302 36.3412474,28.8799623 34.2054524,29.4444752 C33.5569474,29.6158819 32.87575,29.6214505 32.2245294,29.4606688 L23.3459013,27.2685988 C18.2976962,26.022233 14.3561301,22.0806669 13.1097642,17.0324618 L10.9176943,8.15383364 C10.3881737,6.00909519 11.6975664,3.84117987 13.8423049,3.31165925 C14.4935255,3.15087753 15.1747229,3.15644615 15.8232279,3.32785281 Z" opacity=".5" transform="translate(23.999997, 16.378385) rotate(-45.000000) translate(-23.999997, -16.378385)"/></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="48" height="48" version="1.1" viewBox="0 0 48 48"><title>illustration/stackalt</title><g id="illustration/stackalt" fill="none" fill-rule="evenodd" stroke="none" stroke-width="1"><path id="Combined-Shape" fill="#FFAE00" d="M23.8628277,0 L23.8628277,48 L3.32291648,36.2491883 L3.32155653,11.9499781 L23.8628277,0 Z M23.8670509,0 L44.408322,11.9499781 L44.4069621,36.2491883 L23.8670509,48 L23.8670509,0 Z" opacity=".196"/><path id="Rectangle-46-Copy-3" fill="#66BF3C" d="M15.8232279,19.1155258 L24.7368455,21.4714881 C29.6053842,22.7582937 33.4077423,26.5606518 34.694548,31.4291905 L37.0505103,40.3428082 C37.6150232,42.4786032 36.3412474,44.6676353 34.2054524,45.2321482 C33.5569474,45.4035549 32.87575,45.4091235 32.2245294,45.2483418 L23.3459013,43.0562718 C18.2976962,41.809906 14.3561301,37.8683399 13.1097642,32.8201348 L10.9176943,23.9415066 C10.3881737,21.7967682 11.6975664,19.6288529 13.8423049,19.0993322 C14.4935255,18.9385505 15.1747229,18.9441191 15.8232279,19.1155258 Z" opacity=".5" transform="translate(23.999997, 32.166058) rotate(-45.000000) translate(-23.999997, -32.166058)"/><path id="Rectangle-46-Copy-2" fill="#FFAE00" d="M15.8232279,11.2216893 L24.7368455,13.5776516 C29.6053842,14.8644572 33.4077423,18.6668153 34.694548,23.5353541 L37.0505103,32.4489717 C37.6150232,34.5847667 36.3412474,36.7737988 34.2054524,37.3383117 C33.5569474,37.5097184 32.87575,37.515287 32.2245294,37.3545053 L23.3459013,35.1624353 C18.2976962,33.9160695 14.3561301,29.9745034 13.1097642,24.9262983 L10.9176943,16.0476701 C10.3881737,13.9029317 11.6975664,11.7350164 13.8423049,11.2054957 C14.4935255,11.044714 15.1747229,11.0502826 15.8232279,11.2216893 Z" opacity=".5" transform="translate(23.999997, 24.272222) rotate(-45.000000) translate(-23.999997, -24.272222)"/><path id="Rectangle-46-Copy" fill="#FC521F" d="M15.8232279,3.32785281 L24.7368455,5.68381509 C29.6053842,6.97062075 33.4077423,10.7729788 34.694548,15.6415176 L37.0505103,24.5551352 C37.6150232,26.6909302 36.3412474,28.8799623 34.2054524,29.4444752 C33.5569474,29.6158819 32.87575,29.6214505 32.2245294,29.4606688 L23.3459013,27.2685988 C18.2976962,26.022233 14.3561301,22.0806669 13.1097642,17.0324618 L10.9176943,8.15383364 C10.3881737,6.00909519 11.6975664,3.84117987 13.8423049,3.31165925 C14.4935255,3.15087753 15.1747229,3.15644615 15.8232279,3.32785281 Z" opacity=".5" transform="translate(23.999997, 16.378385) rotate(-45.000000) translate(-23.999997, -16.378385)"/></g></svg>
diff --git a/tools/analytics/helper_functions.py b/tools/analytics/helper_functions.py
index b92b177d0..976166ee4 100644
--- a/tools/analytics/helper_functions.py
+++ b/tools/analytics/helper_functions.py
@@ -7,112 +7,120 @@
 from dateutil.relativedelta import relativedelta
 import calendar
 
-SCOPES = ['https://www.googleapis.com/auth/analytics.readonly']
-KEY_FILE_LOCATION = 'client_secrets.json'
-VIEW_ID = '234549909'
+SCOPES = ["https://www.googleapis.com/auth/analytics.readonly"]
+KEY_FILE_LOCATION = "client_secrets.json"
+VIEW_ID = "234549909"
 
 
 def initialize_analyticsreporting():
-  """Initializes an Analytics Reporting API V4 service object.
+    """Initializes an Analytics Reporting API V4 service object.
 
-  Returns:
-    An authorized Analytics Reporting API V4 service object.
-  """
-  credentials = ServiceAccountCredentials.from_json_keyfile_name(KEY_FILE_LOCATION, SCOPES)
+    Returns:
+      An authorized Analytics Reporting API V4 service object.
+    """
+    credentials = ServiceAccountCredentials.from_json_keyfile_name(
+        KEY_FILE_LOCATION, SCOPES
+    )
 
-  # Build the service object.
-  analytics = build('analyticsreporting', 'v4', credentials=credentials)
+    # Build the service object.
+    analytics = build("analyticsreporting", "v4", credentials=credentials)
+
+    return analytics
 
-  return analytics
 
 def get_report(analytics, query):
-  """Queries the Analytics Reporting API V4.
+    """Queries the Analytics Reporting API V4.
+
+    Args:
+      analytics: An authorized Analytics Reporting API V4 service object.
+    Returns:
+      The Analytics Reporting API V4 response.
+    """
+    return analytics.reports().batchGet(body=query).execute()
 
-  Args:
-    analytics: An authorized Analytics Reporting API V4 service object.
-  Returns:
-    The Analytics Reporting API V4 response.
-  """
-  return analytics.reports().batchGet(body=query).execute()
 
 def print_response(response):
-  """Parses and prints the Analytics Reporting API V4 response.
+    """Parses and prints the Analytics Reporting API V4 response.
+
+    Args:
+      response: An Analytics Reporting API V4 response.
+    """
+    for report in response.get("reports", []):
+        columnHeader = report.get("columnHeader", {})
+        dimensionHeaders = columnHeader.get("dimensions", [])
+        metricHeaders = columnHeader.get("metricHeader", {}).get(
+            "metricHeaderEntries", []
+        )
 
-  Args:
-    response: An Analytics Reporting API V4 response.
-  """
-  for report in response.get('reports', []):
-    columnHeader = report.get('columnHeader', {})
-    dimensionHeaders = columnHeader.get('dimensions', [])
-    metricHeaders = columnHeader.get('metricHeader', {}).get('metricHeaderEntries', [])
+        for row in report.get("data", {}).get("rows", []):
+            dimensions = row.get("dimensions", [])
+            dateRangeValues = row.get("metrics", [])
 
-    for row in report.get('data', {}).get('rows', []):
-      dimensions = row.get('dimensions', [])
-      dateRangeValues = row.get('metrics', [])
+            for header, dimension in zip(dimensionHeaders, dimensions):
+                print(header + ": ", dimension)
 
-      for header, dimension in zip(dimensionHeaders, dimensions):
-        print(header + ': ', dimension)
+            for i, values in enumerate(dateRangeValues):
+                print("Date range:", str(i))
+                for metricHeader, value in zip(metricHeaders, values.get("values")):
+                    print(metricHeader.get("name") + ":", value)
 
-      for i, values in enumerate(dateRangeValues):
-        print('Date range:', str(i))
-        for metricHeader, value in zip(metricHeaders, values.get('values')):
-          print(metricHeader.get('name') + ':', value)
 
 def progress_bar_counter(dt, ds, update_interval):
-  if update_interval == "Daily":
-    return (ds - dt).days + 1
+    if update_interval == "Daily":
+        return (ds - dt).days + 1
 
-  weeks_counter = 0
-  if update_interval == "Weekly":
-    start = dt - timedelta(days=dt.weekday())
-    end = start + timedelta(days=6)
     weeks_counter = 0
+    if update_interval == "Weekly":
+        start = dt - timedelta(days=dt.weekday())
+        end = start + timedelta(days=6)
+        weeks_counter = 0
 
-    while start <= ds:
-      weeks_counter += 1
-      start = start + timedelta(days=7)
-      end = start + timedelta(days=6)
+        while start <= ds:
+            weeks_counter += 1
+            start = start + timedelta(days=7)
+            end = start + timedelta(days=6)
 
-    return weeks_counter
+        return weeks_counter
 
-  months_counter = 0
-  if update_interval == "Monthly":
-    start = end = dt
-
-    start = start.replace(day=1)
-    end = end.replace(day = calendar.monthrange(start.year, start.month)[1])
     months_counter = 0
+    if update_interval == "Monthly":
+        start = end = dt
+
+        start = start.replace(day=1)
+        end = end.replace(day=calendar.monthrange(start.year, start.month)[1])
+        months_counter = 0
+
+        # Get the number of months for the progress bar
+        while start <= ds:
+            months_counter += 1
+            start = start + relativedelta(months=+1)
+            end = start = start.replace(day=1)
+            end = end.replace(day=calendar.monthrange(start.year, start.month)[1])
 
-    # Get the number of months for the progress bar
-    while start <= ds:
-      months_counter += 1
-      start = start + relativedelta(months=+1)
-      end = start = start.replace(day=1)
-      end = end.replace(day = calendar.monthrange(start.year, start.month)[1])
+        return months_counter
 
-    return months_counter
 
 def next_date_interval(start, end, update_interval):
-  if update_interval == "Daily":
-    start = start + timedelta(days=1)
-    end = start
-    return start, end
-
-  if update_interval == "Weekly":
-    start = start + timedelta(days=7)
-    end = start + timedelta(days=6)
-    return start, end
-
-  if update_interval == "Monthly":
-    start = start + relativedelta(months=+1)
-    end = start = start.replace(day=1)
-    end = end.replace(day = calendar.monthrange(start.year, start.month)[1])
-    return start, end
-
-  if update_interval == "No Separation":
-    start = end + relativedelta(months=+1)
-    end = end.replace(day = calendar.monthrange(start.year, start.month)[1])
-    return start, end
+    if update_interval == "Daily":
+        start = start + timedelta(days=1)
+        end = start
+        return start, end
+
+    if update_interval == "Weekly":
+        start = start + timedelta(days=7)
+        end = start + timedelta(days=6)
+        return start, end
+
+    if update_interval == "Monthly":
+        start = start + relativedelta(months=+1)
+        end = start = start.replace(day=1)
+        end = end.replace(day=calendar.monthrange(start.year, start.month)[1])
+        return start, end
+
+    if update_interval == "No Separation":
+        start = end + relativedelta(months=+1)
+        end = end.replace(day=calendar.monthrange(start.year, start.month)[1])
+        return start, end
 
 
 ###########################################################
diff --git a/tools/soda-json-structure/soda-sparc-structure.py b/tools/soda-json-structure/soda-sparc-structure.py
index c3ff4e497..24947669b 100644
--- a/tools/soda-json-structure/soda-sparc-structure.py
+++ b/tools/soda-json-structure/soda-sparc-structure.py
@@ -1,4 +1,3 @@
-
 """
 This is the json structure used in SODA for the major communication between front and back end
 Details about the different keys are provided below
@@ -11,7 +10,7 @@
 2. Each file/folder info is stored in a key refering to the name of the file/folder (including the extension for files). If user renames the file/folder, this key should change to register that.
 3. The files/folders in each folder are stored in a "files"/"folders" key, respectively.
 4. Each file/folder has a subkey "type" which is a string with value either "virtual" (only for folders, if created in SODA), "local", or "bf"
-5. Each non virtual file/folder has a subkey "path" with is a string with value being the absolute path (for local files) or blackfynn id 
+5. Each non virtual file/folder has a subkey "path" with is a string with value being the absolute path (for local files) or blackfynn id
 6. Each non virtual file/folder has a subkey "action" which is an array containing "existing" (if it from an existing local or bf dataset) or "new" (if imported).
 7. If "new", additional "action" could be "renamed". If "existing", addtional "action" could be "renamed", "moved" (if an existing file/folder is moved), and/or "deleted" (if delete is requested in the UI)
 8. If provided, a file with have the subkeys "description" and "additional-metadata" each contain a string value to be later included in the manifest files, if requested
@@ -58,130 +57,114 @@
 """
 
 
-
 soda_json_structure = {
     "bf-account-selected": {
         "account-name": "bhavesh-Windows-work",
     },
-    
     "bf-dataset-selected": {
         "dataset-name": "bigdata",
     },
-    
     "dataset-structure": {
         "folders": {
             "code": {
                 "type": "virtual",
-                "folders": {     
-                    "codefolder1": { 
+                "folders": {
+                    "codefolder1": {
                         "type": "virtual",
                         "folders": {
-                            "subfolder1": { 
+                            "subfolder1": {
                                 "type": "virtual",
                                 "files": {
-                                    "some-jpg-image.jpg":{
+                                    "some-jpg-image.jpg": {
                                         "type": "local",
                                         "action": ["new"],
-                                        "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder1\subfolder1\some-jpg-image.jpg",  
+                                        "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder1\subfolder1\some-jpg-image.jpg",
                                         "description": "my jpg description",
                                         "additional-metadata": "my additional jpg metadata",
                                     },
                                 },
                             },
-                            "subfolder2-renamed": { 
+                            "subfolder2-renamed": {
                                 "type": "local",
                                 "action": ["new"],
                                 "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder1\subfolder2",
-                                "folders": { 
-                                    "subsubfolder1":{
+                                "folders": {
+                                    "subsubfolder1": {
                                         "type": "virtual",
                                         "files": {
-                                            "some-source-data.csv":{
+                                            "some-source-data.csv": {
                                                 "type": "local",
                                                 "action": ["new"],
                                                 "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder1\subfolder2\subsubfolder1\some-source-data.csv",
                                                 "description": "my csv description",
                                                 "additional-metadata": "my additional csv metadata",
-                                                "action": ["new"]
+                                                "action": ["new"],
                                             },
                                         },
                                     },
                                 },
                                 "files": {
-                                    "some-png-image.png":{
+                                    "some-png-image.png": {
                                         "type": "local",
                                         "action": ["new"],
                                         "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder1\subfolder2\some-png-image.png",
                                     },
                                 },
                             },
-
                         },
-                     },
-
-                     "codefolder2": { 
+                    },
+                    "codefolder2": {
                         "type": "local",
                         "action": ["new"],
                         "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder2",
-                        "folders": {
-                        },
+                        "folders": {},
                         "files": {
-                            "random-text-file.txt":{
+                            "random-text-file.txt": {
                                 "type": "local",
                                 "action": ["new"],
-                                "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder2\random-text-file.txt"
+                                "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\codefolder2\random-text-file.txt",
                             },
                         },
                     },
                 },
-
-
-
-                "files":{
-                    "some-abaqus-input-renamed.inp": { 
+                "files": {
+                    "some-abaqus-input-renamed.inp": {
                         "type": "local",
                         "action": ["new"],
                         "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\some-abaqus-input.inp",
                         "description": "my inp description",
                         "additional-metadata": "my additional inp metadata",
                     },
-                    "some-abaqus-model.cae": { 
+                    "some-abaqus-model.cae": {
                         "type": "local",
                         "action": ["new"],
                         "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\code\some-abaqus-model.cae",
                         "description": "my cae description",
                         "additional-metadata": "my additional cae metadata",
-                    },   
+                    },
                 },
             },
         },
     },
-        
-    
     "metadata-files": {
-        "submission.xlsx":{
+        "submission.xlsx": {
             "type": "local",
             "action": ["new"],
-            "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\submission.xlsx", 
-            },
-
+            "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\submission.xlsx",
+        },
         "dataset_description.xlsx": {
             "type": "local",
             "action": ["new"],
-            "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\dataset_description.xlsx",  
+            "path": r"C:\Users\Bhavesh\OneDrive - Calmi2\Bhavesh\SPARC\SODA - Phase 2\Code\test-data\virtual_dataset\dataset_description.xlsx",
         },
     },
-
-    
-    "manifest-files":{
+    "manifest-files": {
         "destination": "generate-dataset",
     },
-    
-
     "generate-dataset": {
         "destination": "local",
         "path": r"C:\Users\Bhavesh\Desktop\new-dataset",
         "dataset-name": "generate-local-new-dataset",
         "if-existing": "new",
     },
-}
\ No newline at end of file
+}