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Change: Only embed specs/namespaces for types that are included in NWB file on export #126

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Change: Only embed specs/namespaces for types that are included in NWB file on export

Change: Only embed specs/namespaces for types that are included in NWB file on export #126

GitHub Actions / JUnit Test Report failed Nov 23, 2024 in 0s

219 tests run, 142 passed, 0 skipped, 77 failed.

Annotations

Check failure on line 1 in AlignedSpikeTimesUtilityTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

AlignedSpikeTimesUtilityTest.psthTest 

Error occurred in tests.system.AlignedSpikeTimesUtilityTest/psthTest and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.AlignedSpikeTimesUtilityTest/psthTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.AlignedSpikeTimesUtilityTest/psthTest (line 78)
                nwbExport(file, filename);

Check failure on line 1 in DynamicTableTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

DynamicTableTest.testAmend 

Error occurred in tests.system.DynamicTableTest/testAmend and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.DynamicTableTest/testAmend and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.AmendTest/testAmend (line 5)
                nwbExport(testCase.file, filename);

Check failure on line 1 in DynamicTableTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

DynamicTableTest.testRoundTrip 

Error occurred in tests.system.DynamicTableTest/testRoundTrip and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.DynamicTableTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 5)
                nwbExport(testCase.file, filename);

Check failure on line 1 in DynamicTableTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

DynamicTableTest.getRowRoundtripTest 

Error occurred in tests.system.DynamicTableTest/getRowRoundtripTest and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.DynamicTableTest/getRowRoundtripTest and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.DynamicTableTest/getRowRoundtripTest (line 210)
                nwbExport(testCase.file, filename);

Check failure on line 1 in ElectricalSeriesIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ElectricalSeriesIOTest.testRoundTrip 

Error occurred in tests.system.ElectricalSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ElectricalSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 5)
                nwbExport(testCase.file, filename);

Check failure on line 1 in ElectricalSeriesIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ElectricalSeriesIOTest.testOutToPyNWB 

Error occurred in tests.system.ElectricalSeriesIOTest/testOutToPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ElectricalSeriesIOTest/testOutToPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testOutToPyNWB (line 12)
                nwbExport(testCase.file, filename);

Check failure on line 1 in ElectricalSeriesIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ElectricalSeriesIOTest.testInFromPyNWB 

Error occurred in tests.system.ElectricalSeriesIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ElectricalSeriesIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 28)
                nwbExport(testCase.file, 'temp.nwb'); % hack to fill out ObjectView container paths.

Check failure on line 1 in ElectrodeGroupIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ElectrodeGroupIOTest.testRoundTrip 

Error occurred in tests.system.ElectrodeGroupIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ElectrodeGroupIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 5)
                nwbExport(testCase.file, filename);

Check failure on line 1 in ElectrodeGroupIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ElectrodeGroupIOTest.testOutToPyNWB 

Error occurred in tests.system.ElectrodeGroupIOTest/testOutToPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ElectrodeGroupIOTest/testOutToPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testOutToPyNWB (line 12)
                nwbExport(testCase.file, filename);

Check failure on line 1 in ElectrodeGroupIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ElectrodeGroupIOTest.testInFromPyNWB 

Error occurred in tests.system.ElectrodeGroupIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ElectrodeGroupIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 28)
                nwbExport(testCase.file, 'temp.nwb'); % hack to fill out ObjectView container paths.

Check failure on line 1 in ImagingPlaneIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ImagingPlaneIOTest.testRoundTrip 

Error occurred in tests.system.ImagingPlaneIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ImagingPlaneIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 5)
                nwbExport(testCase.file, filename);

Check failure on line 1 in ImagingPlaneIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ImagingPlaneIOTest.testOutToPyNWB 

Error occurred in tests.system.ImagingPlaneIOTest/testOutToPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ImagingPlaneIOTest/testOutToPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testOutToPyNWB (line 12)
                nwbExport(testCase.file, filename);

Check failure on line 1 in ImagingPlaneIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

ImagingPlaneIOTest.testInFromPyNWB 

Error occurred in tests.system.ImagingPlaneIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.ImagingPlaneIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 28)
                nwbExport(testCase.file, 'temp.nwb'); % hack to fill out ObjectView container paths.

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.testRoundTrip 

Error occurred in tests.system.NWBFileIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 5)
                nwbExport(testCase.file, filename);

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.testOutToPyNWB 

Error occurred in tests.system.NWBFileIOTest/testOutToPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/testOutToPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testOutToPyNWB (line 12)
                nwbExport(testCase.file, filename);

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.testInFromPyNWB 

Error occurred in tests.system.NWBFileIOTest/testInFromPyNWB and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/testInFromPyNWB and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.PyNWBIOTest/testInFromPyNWB (line 28)
                nwbExport(testCase.file, 'temp.nwb'); % hack to fill out ObjectView container paths.

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.writeMultipleFiles 

Error occurred in tests.system.NWBFileIOTest/writeMultipleFiles and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/writeMultipleFiles and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.NWBFileIOTest/writeMultipleFiles (line 40)
                nwbExport([fileA, fileB], {fileNameA, fileNameB});

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.testLoadAll 

Error occurred in tests.system.NWBFileIOTest/testLoadAll and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/testLoadAll and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.NWBFileIOTest/testLoadAll (line 45)
                nwbExport(testCase.file, fileName)

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.readWithStringArg 

Error occurred in tests.system.NWBFileIOTest/readWithStringArg and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/readWithStringArg and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.NWBFileIOTest/readWithStringArg (line 53)
                nwbExport(testCase.file, fileName)

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.readFileWithoutSpec 

Error occurred in tests.system.NWBFileIOTest/readFileWithoutSpec and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/readFileWithoutSpec and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.NWBFileIOTest/readFileWithoutSpec (line 59)
                nwbExport(testCase.file, fileName)

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.readFileWithoutSpecLoc 

Error occurred in tests.system.NWBFileIOTest/readFileWithoutSpecLoc and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/readFileWithoutSpecLoc and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.NWBFileIOTest/readFileWithoutSpecLoc (line 67)
                nwbExport(testCase.file, fileName)

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.readFileWithUnsupportedVersion 

Error occurred in tests.system.NWBFileIOTest/readFileWithUnsupportedVersion and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/readFileWithUnsupportedVersion and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.NWBFileIOTest/readFileWithUnsupportedVersion (line 78)
                nwbExport(testCase.file, fileName)

Check failure on line 1 in NWBFileIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

NWBFileIOTest.readFileWithUnsupportedVersionAndNoSpecloc 

Error occurred in tests.system.NWBFileIOTest/readFileWithUnsupportedVersionAndNoSpecloc and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.NWBFileIOTest/readFileWithUnsupportedVersionAndNoSpecloc and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.NWBFileIOTest/readFileWithUnsupportedVersionAndNoSpecloc (line 94)
                nwbExport(testCase.file, fileName)

Check failure on line 1 in PhotonSeriesIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

PhotonSeriesIOTest.testAmend 

Error occurred in tests.system.PhotonSeriesIOTest/testAmend and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.PhotonSeriesIOTest/testAmend and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.AmendTest/testAmend (line 5)
                nwbExport(testCase.file, filename);

Check failure on line 1 in PhotonSeriesIOTest

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

PhotonSeriesIOTest.testRoundTrip 

Error occurred in tests.system.PhotonSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
Raw output 
Error occurred in tests.system.PhotonSeriesIOTest/testRoundTrip and it did not run to completion.
    ---------
    Error ID:
    ---------
    'MATLAB:undefinedVarOrClass'
    --------------
    Error Details:
    --------------
    Unable to resolve the name 'JsonData.name'.
    
    Error in NwbFile/export (line 78)
                    allMatlabNamespaceNames = strrep({JsonData.name}, '-', '_');
    
    Error in nwbExport (line 30)
            nwbFileObjects(iFiles).export(filePath, mode);
    
    Error in tests.system.RoundTripTest/testRoundTrip (line 5)
                nwbExport(testCase.file, filename);
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