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[Feature]: Add default and customizable configuration for dataset chunking #635

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ehennestad opened this issue Nov 23, 2024 · 0 comments · May be fixed by #636
Open
2 tasks done

[Feature]: Add default and customizable configuration for dataset chunking #635

ehennestad opened this issue Nov 23, 2024 · 0 comments · May be fixed by #636
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category: enhancement improvements of code or code behavior priority: high impacts proper operation or use of feature important to most users status: todo something needs to be done topic: nwb-file relates to how an exported nwb file is structured

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@ehennestad
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What would you like to see added to MatNWB?

  • A default set of chunking options that can be customised for individual NWB types
  • Utility function for applying the default chunking options to an NWB file

Should not apply default chunking options to datasets where chunking options are set manually by the user.

@bendichter Please add more details

Is your feature request related to a problem?

No response

What solution would you like?

chunkConfig = nwbGetChunkConfiguration()
nwbObj = NwbFile(...)
nwbObj.applyChunkConfig(chunkConfig)
% Alternatively
nwbexport(nwbObj, "ChunkConfiguration", chunkConfig)

Do you have any interest in helping implement the feature?

Yes.

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@ehennestad ehennestad linked a pull request Nov 23, 2024 that will close this issue
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@ehennestad ehennestad added category: enhancement improvements of code or code behavior priority: high impacts proper operation or use of feature important to most users status: todo something needs to be done topic: nwb-file relates to how an exported nwb file is structured labels Dec 9, 2024
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category: enhancement improvements of code or code behavior priority: high impacts proper operation or use of feature important to most users status: todo something needs to be done topic: nwb-file relates to how an exported nwb file is structured
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Provide default options for chunking of datasets (issue #635) NeurodataWithoutBorders/matnwb
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@ehennestad