From 30e5059f700b286137b4f672280ca172c0ca0f88 Mon Sep 17 00:00:00 2001 From: stephprince <40640337+stephprince@users.noreply.github.com> Date: Wed, 7 Aug 2024 21:03:21 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh=5Fpages=20from=20@=20Neurod?= =?UTF-8?q?ataWithoutBorders/aqnwb@e36766fe33c812aa84bd077d886d3afa14a9044?= =?UTF-8?q?2=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- _base_i_o_8hpp_source.html | 161 ++++++------ _h_d_f5_i_o_8cpp.html | 1 + _h_d_f5_i_o_8cpp__incl.map | 64 ++--- _h_d_f5_i_o_8cpp__incl.md5 | 2 +- _h_d_f5_i_o_8cpp__incl.svg | 244 ++++++++++-------- _h_d_f5_i_o_8cpp__incl_org.svg | 244 ++++++++++-------- _h_d_f5_i_o_8hpp_source.html | 159 ++++++------ _n_w_b_file_8hpp_source.html | 141 +++++----- _n_w_b_recording_8hpp_source.html | 4 +- class_a_q_n_w_b_1_1_base_i_o-members.html | 57 ++-- class_a_q_n_w_b_1_1_base_i_o.html | 99 +++++++ class_a_q_n_w_b_1_1_base_i_o.js | 3 + ...w_b_1_1_h_d_f5_1_1_h_d_f5_i_o-members.html | 69 ++--- ...s_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html | 115 ++++++++- class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.js | 5 +- ..._w_b_1_1_n_w_b_1_1_n_w_b_file-members.html | 9 +- class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html | 60 +++-- class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.js | 5 +- doxygen_crawl.html | 13 +- functions_c.html | 1 + functions_f.html | 2 +- functions_func.html | 8 +- functions_i.html | 2 +- functions_s.html | 3 +- index.html | 2 +- navtreedata.js | 4 +- navtreeindex0.js | 192 +++++++------- navtreeindex1.js | 54 ++-- navtreeindex2.js | 14 + search/all_2.js | 71 ++--- search/all_5.js | 2 +- search/all_7.js | 2 +- search/all_8.js | 2 +- search/all_f.js | 9 +- search/functions_2.js | 39 +-- search/functions_5.js | 2 +- search/functions_7.js | 2 +- search/functions_8.js | 2 +- search/functions_c.js | 5 +- 39 files changed, 1101 insertions(+), 772 deletions(-) diff --git a/_base_i_o_8hpp_source.html b/_base_i_o_8hpp_source.html index 903d5288..52379be6 100644 --- a/_base_i_o_8hpp_source.html +++ b/_base_i_o_8hpp_source.html @@ -227,72 +227,78 @@
238 virtual Status createReferenceDataSet(
239 const std::string& path, const std::vector<std::string>& references) = 0;
240
-
250 virtual std::unique_ptr<BaseRecordingData> createArrayDataSet(
-
251 const BaseDataType& type,
-
252 const SizeArray& size,
-
253 const SizeArray& chunking,
-
254 const std::string& path) = 0;
-
255
-
261 virtual std::unique_ptr<BaseRecordingData> getDataSet(
-
262 const std::string& path) = 0;
-
263
-
272 Status createCommonNWBAttributes(const std::string& path,
-
273 const std::string& objectNamespace,
-
274 const std::string& neurodataType = "",
-
275 const std::string& description = "");
+
245 virtual Status startRecording() = 0;
+
246
+
251 virtual Status stopRecording() = 0;
+
252
+
260 virtual bool canModifyObjects();
+
261
+
271 virtual std::unique_ptr<BaseRecordingData> createArrayDataSet(
+
272 const BaseDataType& type,
+
273 const SizeArray& size,
+
274 const SizeArray& chunking,
+
275 const std::string& path) = 0;
276
-
286 Status createDataAttributes(const std::string& path,
-
287 const float& conversion,
-
288 const float& resolution,
-
289 const std::string& unit);
-
290
-
296 Status createTimestampsAttributes(const std::string& path);
-
301 bool isOpen() const;
-
302
-
307 bool isReadyToOpen() const;
-
308
-
312 const std::string filename;
-
313
-
314protected:
-
320 virtual Status createGroupIfDoesNotExist(const std::string& path) = 0;
-
321
-
325 bool readyToOpen;
-
326
-
330 bool opened;
-
331};
+
282 virtual std::unique_ptr<BaseRecordingData> getDataSet(
+
283 const std::string& path) = 0;
+
284
+
293 Status createCommonNWBAttributes(const std::string& path,
+
294 const std::string& objectNamespace,
+
295 const std::string& neurodataType = "",
+
296 const std::string& description = "");
+
297
+
307 Status createDataAttributes(const std::string& path,
+
308 const float& conversion,
+
309 const float& resolution,
+
310 const std::string& unit);
+
311
+
317 Status createTimestampsAttributes(const std::string& path);
+
322 bool isOpen() const;
+
323
+
328 bool isReadyToOpen() const;
+
329
+
333 const std::string filename;
+
334
+
335protected:
+
341 virtual Status createGroupIfDoesNotExist(const std::string& path) = 0;
+
342
+
346 bool readyToOpen;
+
347
+
351 bool opened;
+
352};
-
332
-
-
338class BaseRecordingData
-
339{
-
340public:
-
344 BaseRecordingData();
-
345
-
349 BaseRecordingData(const BaseRecordingData&) = delete;
-
350
-
354 BaseRecordingData& operator=(const BaseRecordingData&) = delete;
-
355
-
359 virtual ~BaseRecordingData();
-
360
-
370 Status writeDataBlock(const std::vector<SizeType>& dataShape,
-
371 const BaseDataType& type,
-
372 const void* data);
-
373
-
382 virtual Status writeDataBlock(const std::vector<SizeType>& dataShape,
-
383 const std::vector<SizeType>& positionOffset,
-
384 const BaseDataType& type,
-
385 const void* data) = 0;
-
386
-
387protected:
-
391 std::vector<SizeType> size;
-
392
-
396 std::vector<SizeType> position;
-
397
-
401 SizeType nDimensions;
-
402};
+
353
+
+ +
360{
+
361public:
+ +
366
+ +
371
+ +
376
+
380 virtual ~BaseRecordingData();
+
381
+
391 Status writeDataBlock(const std::vector<SizeType>& dataShape,
+
392 const BaseDataType& type,
+
393 const void* data);
+
394
+
403 virtual Status writeDataBlock(const std::vector<SizeType>& dataShape,
+
404 const std::vector<SizeType>& positionOffset,
+
405 const BaseDataType& type,
+
406 const void* data) = 0;
+
407
+
408protected:
+
412 std::vector<SizeType> size;
+
413
+
417 std::vector<SizeType> position;
+
418
+ +
423};
-
403
-
404} // namespace AQNWB
+
424
+
425} // namespace AQNWB
SizeType
AQNWB::Types::SizeType SizeType
Definition BaseIO.hpp:16
SizeArray
AQNWB::Types::SizeArray SizeArray
Definition BaseIO.hpp:15
@@ -327,7 +333,8 @@
AQNWB::BaseDataType::BaseDataType
BaseDataType(Type t=T_I32, SizeType s=1)
Constructs a BaseDataType object with the specified type and size.
Definition BaseIO.cpp:9
AQNWB::BaseDataType::I8
static const BaseDataType I8
Accessor for signed 8-bit integer.
Definition BaseIO.hpp:67
AQNWB::BaseIO
The BaseIO class is an abstract base class that defines the interface for input/output (IO) operation...
Definition BaseIO.hpp:88
-
AQNWB::BaseIO::opened
bool opened
Whether the file is currently open.
Definition BaseIO.hpp:330
+
AQNWB::BaseIO::opened
bool opened
Whether the file is currently open.
Definition BaseIO.hpp:351
+
AQNWB::BaseIO::stopRecording
virtual Status stopRecording()=0
Stops the recording process.
AQNWB::BaseIO::createAttribute
virtual Status createAttribute(const BaseDataType &type, const void *data, const std::string &path, const std::string &name, const SizeType &size=1)=0
Creates an attribute at a given location in the file.
AQNWB::BaseIO::getFileName
virtual std::string getFileName()=0
Returns the full path to the file.
AQNWB::BaseIO::createReferenceDataSet
virtual Status createReferenceDataSet(const std::string &path, const std::vector< std::string > &references)=0
Creates a dataset that holds an array of references to groups within the file.
@@ -335,37 +342,39 @@
AQNWB::BaseIO::operator=
BaseIO & operator=(const BaseIO &)=delete
Assignment operator is deleted to prevent copying.
AQNWB::BaseIO::BaseIO
BaseIO(const BaseIO &)=delete
Copy constructor is deleted to prevent construction-copying.
AQNWB::BaseIO::createStringDataSet
virtual Status createStringDataSet(const std::string &path, const std::vector< std::string > &values)=0
Creates a dataset that holds an array of string values.
-
AQNWB::BaseIO::createDataAttributes
Status createDataAttributes(const std::string &path, const float &conversion, const float &resolution, const std::string &unit)
Convenience function for creating data related attributes.
Definition BaseIO.cpp:66
+
AQNWB::BaseIO::createDataAttributes
Status createDataAttributes(const std::string &path, const float &conversion, const float &resolution, const std::string &unit)
Convenience function for creating data related attributes.
Definition BaseIO.cpp:71
AQNWB::BaseIO::createGroupIfDoesNotExist
virtual Status createGroupIfDoesNotExist(const std::string &path)=0
Creates a new group if it does not already exist.
AQNWB::BaseIO::createReferenceAttribute
virtual Status createReferenceAttribute(const std::string &referencePath, const std::string &path, const std::string &name)=0
Sets an object reference attribute for a given location in the file.
AQNWB::BaseIO::createGroup
virtual Status createGroup(const std::string &path)=0
Creates a new group in the file.
AQNWB::BaseIO::createStringDataSet
virtual Status createStringDataSet(const std::string &path, const std::string &value)=0
Creates a non-modifiable dataset with a string value.
+
AQNWB::BaseIO::startRecording
virtual Status startRecording()=0
Starts the recording process.
AQNWB::BaseIO::createAttribute
virtual Status createAttribute(const std::string &data, const std::string &path, const std::string &name)=0
Creates a string attribute at a given location in the file.
AQNWB::BaseIO::~BaseIO
virtual ~BaseIO()
Destructor the BaseIO class.
Definition BaseIO.cpp:40
AQNWB::BaseIO::BaseIO
BaseIO()
Constructor for the BaseIO class.
Definition BaseIO.cpp:34
AQNWB::BaseIO::isReadyToOpen
bool isReadyToOpen() const
Returns true if the file is able to be opened.
Definition BaseIO.cpp:47
AQNWB::BaseIO::createArrayDataSet
virtual std::unique_ptr< BaseRecordingData > createArrayDataSet(const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path)=0
Creates an extendable dataset with a given base data type, size, chunking, and path.
AQNWB::BaseIO::close
virtual Status close()=0
Closes the file.
-
AQNWB::BaseIO::createTimestampsAttributes
Status createTimestampsAttributes(const std::string &path)
Convenience function for creating timestamp related attributes.
Definition BaseIO.cpp:78
-
AQNWB::BaseIO::filename
const std::string filename
The name of the file.
Definition BaseIO.hpp:312
-
AQNWB::BaseIO::createCommonNWBAttributes
Status createCommonNWBAttributes(const std::string &path, const std::string &objectNamespace, const std::string &neurodataType="", const std::string &description="")
Convenience function for creating NWB related attributes.
Definition BaseIO.cpp:52
+
AQNWB::BaseIO::createTimestampsAttributes
Status createTimestampsAttributes(const std::string &path)
Convenience function for creating timestamp related attributes.
Definition BaseIO.cpp:83
+
AQNWB::BaseIO::filename
const std::string filename
The name of the file.
Definition BaseIO.hpp:333
+
AQNWB::BaseIO::createCommonNWBAttributes
Status createCommonNWBAttributes(const std::string &path, const std::string &objectNamespace, const std::string &neurodataType="", const std::string &description="")
Convenience function for creating NWB related attributes.
Definition BaseIO.cpp:57
+
AQNWB::BaseIO::canModifyObjects
virtual bool canModifyObjects()
Returns true if the file is in a mode where objects can be added or deleted. Note,...
Definition BaseIO.cpp:52
AQNWB::BaseIO::isOpen
bool isOpen() const
Returns true if the file is open.
Definition BaseIO.cpp:42
AQNWB::BaseIO::getDataSet
virtual std::unique_ptr< BaseRecordingData > getDataSet(const std::string &path)=0
Returns a pointer to a dataset at a given path.
-
AQNWB::BaseIO::readyToOpen
bool readyToOpen
Whether the file is ready to be opened.
Definition BaseIO.hpp:325
+
AQNWB::BaseIO::readyToOpen
bool readyToOpen
Whether the file is ready to be opened.
Definition BaseIO.hpp:346
AQNWB::BaseIO::createAttribute
virtual Status createAttribute(const std::vector< const char * > &data, const std::string &path, const std::string &name, const SizeType &maxSize)=0
Creates a string array attribute at a given location in the file.
AQNWB::BaseIO::createAttribute
virtual Status createAttribute(const std::vector< std::string > &data, const std::string &path, const std::string &name)=0
Creates a string array attribute at a given location in the file.
AQNWB::BaseIO::createLink
virtual Status createLink(const std::string &path, const std::string &reference)=0
Creates a soft link to another location in the file.
AQNWB::BaseIO::open
virtual Status open(bool newfile)=0
Opens an existing file or creates a new file for writing.
-
AQNWB::BaseRecordingData
The base class to represent recording data that can be extended.
Definition BaseIO.hpp:339
+
AQNWB::BaseRecordingData
The base class to represent recording data that can be extended.
Definition BaseIO.hpp:360
AQNWB::BaseRecordingData::operator=
BaseRecordingData & operator=(const BaseRecordingData &)=delete
Deleted copy assignment operator to prevent copying.
-
AQNWB::BaseRecordingData::size
std::vector< SizeType > size
The size of the dataset in each dimension.
Definition BaseIO.hpp:391
-
AQNWB::BaseRecordingData::nDimensions
SizeType nDimensions
The number of dimensions in the data block.
Definition BaseIO.hpp:401
+
AQNWB::BaseRecordingData::size
std::vector< SizeType > size
The size of the dataset in each dimension.
Definition BaseIO.hpp:412
+
AQNWB::BaseRecordingData::nDimensions
SizeType nDimensions
The number of dimensions in the data block.
Definition BaseIO.hpp:422
AQNWB::BaseRecordingData::BaseRecordingData
BaseRecordingData(const BaseRecordingData &)=delete
Deleted copy constructor to prevent construction-copying.
-
AQNWB::BaseRecordingData::BaseRecordingData
BaseRecordingData()
Default constructor.
Definition BaseIO.cpp:92
+
AQNWB::BaseRecordingData::BaseRecordingData
BaseRecordingData()
Default constructor.
Definition BaseIO.cpp:97
AQNWB::BaseRecordingData::writeDataBlock
virtual Status writeDataBlock(const std::vector< SizeType > &dataShape, const std::vector< SizeType > &positionOffset, const BaseDataType &type, const void *data)=0
Writes a block of data (any number of dimensions).
-
AQNWB::BaseRecordingData::writeDataBlock
Status writeDataBlock(const std::vector< SizeType > &dataShape, const BaseDataType &type, const void *data)
Writes a block of data using the stored position information. This is not intended to be overwritten ...
Definition BaseIO.cpp:98
-
AQNWB::BaseRecordingData::position
std::vector< SizeType > position
The current position in the dataset.
Definition BaseIO.hpp:396
-
AQNWB::BaseRecordingData::~BaseRecordingData
virtual ~BaseRecordingData()
Destructor.
Definition BaseIO.cpp:94
+
AQNWB::BaseRecordingData::writeDataBlock
Status writeDataBlock(const std::vector< SizeType > &dataShape, const BaseDataType &type, const void *data)
Writes a block of data using the stored position information. This is not intended to be overwritten ...
Definition BaseIO.cpp:103
+
AQNWB::BaseRecordingData::position
std::vector< SizeType > position
The current position in the dataset.
Definition BaseIO.hpp:417
+
AQNWB::BaseRecordingData::~BaseRecordingData
virtual ~BaseRecordingData()
Destructor.
Definition BaseIO.cpp:99
AQNWB::Types::Status
Status
Represents the status of an operation.
Definition Types.hpp:22
AQNWB::Types::SizeArray
std::vector< size_t > SizeArray
Alias for an array of size types used in the project.
Definition Types.hpp:35
AQNWB::Types::SizeType
size_t SizeType
Alias for the size type used in the project.
Definition Types.hpp:30
diff --git a/_h_d_f5_i_o_8cpp.html b/_h_d_f5_i_o_8cpp.html index 99f4f7e2..7faf0036 100644 --- a/_h_d_f5_i_o_8cpp.html +++ b/_h_d_f5_i_o_8cpp.html @@ -112,6 +112,7 @@ #include <vector>
#include "HDF5IO.hpp"
#include <H5Cpp.h>
+#include <H5Fpublic.h>
#include "Utils.hpp"
Include dependency graph for HDF5IO.cpp:
diff --git a/_h_d_f5_i_o_8cpp__incl.map b/_h_d_f5_i_o_8cpp__incl.map index 180199a0..44966f0c 100644 --- a/_h_d_f5_i_o_8cpp__incl.map +++ b/_h_d_f5_i_o_8cpp__incl.map @@ -1,21 +1,23 @@ - + - + - + - + - + - + - - - - - + + + + + + + @@ -36,24 +38,24 @@ - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + diff --git a/_h_d_f5_i_o_8cpp__incl.md5 b/_h_d_f5_i_o_8cpp__incl.md5 index 46ab334d..f0e8fc8d 100644 --- a/_h_d_f5_i_o_8cpp__incl.md5 +++ b/_h_d_f5_i_o_8cpp__incl.md5 @@ -1 +1 @@ -c51ca1f3581c55b3e5413b9fd600a944 \ No newline at end of file +6097d1429d7545956c13e3aa3651bacf \ No newline at end of file diff --git a/_h_d_f5_i_o_8cpp__incl.svg b/_h_d_f5_i_o_8cpp__incl.svg index 8fbf2055..059b5431 100644 --- a/_h_d_f5_i_o_8cpp__incl.svg +++ b/_h_d_f5_i_o_8cpp__incl.svg @@ -58,8 +58,8 @@ var sectionId = 'dynsection-0'; Node1 - -src/hdf5/HDF5IO.cpp + +src/hdf5/HDF5IO.cpp @@ -76,8 +76,8 @@ var sectionId = 'dynsection-0'; Node1->Node2 - - + + @@ -94,8 +94,8 @@ var sectionId = 'dynsection-0'; Node1->Node3 - - + + @@ -112,8 +112,8 @@ var sectionId = 'dynsection-0'; Node1->Node4 - - + + @@ -130,8 +130,8 @@ var sectionId = 'dynsection-0'; Node1->Node5 - - + + @@ -148,7 +148,7 @@ var sectionId = 'dynsection-0'; Node1->Node6 - + @@ -166,8 +166,8 @@ var sectionId = 'dynsection-0'; Node1->Node7 - - + + @@ -175,8 +175,8 @@ var sectionId = 'dynsection-0'; Node14 - -H5Cpp.h + +H5Cpp.h @@ -184,17 +184,17 @@ var sectionId = 'dynsection-0'; Node1->Node14 - - + + Node15 - - -Utils.hpp + + +H5Fpublic.h @@ -202,8 +202,26 @@ var sectionId = 'dynsection-0'; Node1->Node15 - - + + + + + + + +Node16 + + +Utils.hpp + + + + + +Node1->Node16 + + + @@ -387,57 +405,39 @@ var sectionId = 'dynsection-0'; - - -Node15->Node7 - - - + + +Node16->Node7 + + + - - -Node15->Node10 - - + + +Node16->Node10 + + - - -Node16 - - -chrono - - - - - -Node15->Node16 - - - - - - Node17 - -ctime + +chrono - - -Node15->Node17 - - - + + +Node16->Node17 + + + @@ -445,17 +445,17 @@ var sectionId = 'dynsection-0'; Node18 - -iomanip + +ctime - - -Node15->Node18 - - - + + +Node16->Node18 + + + @@ -463,17 +463,17 @@ var sectionId = 'dynsection-0'; Node19 - -sstream + +iomanip - - -Node15->Node19 - - - + + +Node16->Node19 + + + @@ -481,17 +481,17 @@ var sectionId = 'dynsection-0'; Node20 - -boost/date_time.hpp + +sstream - - -Node15->Node20 - - - + + +Node16->Node20 + + + @@ -499,17 +499,17 @@ var sectionId = 'dynsection-0'; Node21 - -boost/uuid/uuid.hpp + +boost/date_time.hpp - - -Node15->Node21 - - - + + +Node16->Node21 + + + @@ -517,17 +517,17 @@ var sectionId = 'dynsection-0'; Node22 - -boost/uuid/uuid_generators.hpp + +boost/uuid/uuid.hpp - - -Node15->Node22 - - - + + +Node16->Node22 + + + @@ -535,17 +535,17 @@ var sectionId = 'dynsection-0'; Node23 - -boost/uuid/uuid_io.hpp + +boost/uuid/uuid_generators.hpp - - -Node15->Node23 - - - + + +Node16->Node23 + + + @@ -553,18 +553,36 @@ var sectionId = 'dynsection-0'; Node24 + +boost/uuid/uuid_io.hpp + + + + + +Node16->Node24 + + + + + + + + +Node25 + boost/date_time/c_local _time_adjustor.hpp - - -Node15->Node24 - - - + + +Node16->Node25 + + + diff --git a/_h_d_f5_i_o_8cpp__incl_org.svg b/_h_d_f5_i_o_8cpp__incl_org.svg index 2944c051..6542ece8 100644 --- a/_h_d_f5_i_o_8cpp__incl_org.svg +++ b/_h_d_f5_i_o_8cpp__incl_org.svg @@ -12,8 +12,8 @@ Node1 - -src/hdf5/HDF5IO.cpp + +src/hdf5/HDF5IO.cpp @@ -30,8 +30,8 @@ Node1->Node2 - - + + @@ -48,8 +48,8 @@ Node1->Node3 - - + + @@ -66,8 +66,8 @@ Node1->Node4 - - + + @@ -84,8 +84,8 @@ Node1->Node5 - - + + @@ -102,7 +102,7 @@ Node1->Node6 - + @@ -120,8 +120,8 @@ Node1->Node7 - - + + @@ -129,8 +129,8 @@ Node14 - -H5Cpp.h + +H5Cpp.h @@ -138,17 +138,17 @@ Node1->Node14 - - + + Node15 - - -Utils.hpp + + +H5Fpublic.h @@ -156,8 +156,26 @@ Node1->Node15 - - + + + + + + + +Node16 + + +Utils.hpp + + + + + +Node1->Node16 + + + @@ -341,57 +359,39 @@ - - -Node15->Node7 - - - + + +Node16->Node7 + + + - - -Node15->Node10 - - + + +Node16->Node10 + + - - -Node16 - - -chrono - - - - - -Node15->Node16 - - - - - - Node17 - -ctime + +chrono - - -Node15->Node17 - - - + + +Node16->Node17 + + + @@ -399,17 +399,17 @@ Node18 - -iomanip + +ctime - - -Node15->Node18 - - - + + +Node16->Node18 + + + @@ -417,17 +417,17 @@ Node19 - -sstream + +iomanip - - -Node15->Node19 - - - + + +Node16->Node19 + + + @@ -435,17 +435,17 @@ Node20 - -boost/date_time.hpp + +sstream - - -Node15->Node20 - - - + + +Node16->Node20 + + + @@ -453,17 +453,17 @@ Node21 - -boost/uuid/uuid.hpp + +boost/date_time.hpp - - -Node15->Node21 - - - + + +Node16->Node21 + + + @@ -471,17 +471,17 @@ Node22 - -boost/uuid/uuid_generators.hpp + +boost/uuid/uuid.hpp - - -Node15->Node22 - - - + + +Node16->Node22 + + + @@ -489,17 +489,17 @@ Node23 - -boost/uuid/uuid_io.hpp + +boost/uuid/uuid_generators.hpp - - -Node15->Node23 - - - + + +Node16->Node23 + + + @@ -507,18 +507,36 @@ Node24 + +boost/uuid/uuid_io.hpp + + + + + +Node16->Node24 + + + + + + + + +Node25 + boost/date_time/c_local _time_adjustor.hpp - - -Node15->Node24 - - - + + +Node16->Node25 + + + diff --git a/_h_d_f5_i_o_8hpp_source.html b/_h_d_f5_i_o_8hpp_source.html index 4247a07d..eb1bb7e1 100644 --- a/_h_d_f5_i_o_8hpp_source.html +++ b/_h_d_f5_i_o_8hpp_source.html @@ -135,7 +135,7 @@
30public:
34 HDF5IO();
35
-
40 HDF5IO(const std::string& fileName);
+
40 HDF5IO(const std::string& fileName, const bool disableSWMRMode = false);
41
45 ~HDF5IO();
46
@@ -185,57 +185,65 @@
176 const std::string& path,
177 const std::vector<std::string>& references) override;
178
-
188 std::unique_ptr<BaseRecordingData> createArrayDataSet(
-
189 const BaseDataType& type,
-
190 const SizeArray& size,
-
191 const SizeArray& chunking,
-
192 const std::string& path) override;
-
193
-
199 std::unique_ptr<BaseRecordingData> getDataSet(
-
200 const std::string& path) override;
-
201
-
207 H5O_type_t getObjectType(const std::string& path);
-
208
-
214 static H5::DataType getNativeType(BaseDataType type);
-
215
-
221 static H5::DataType getH5Type(BaseDataType type);
-
222
-
223protected:
-
224 std::string filename;
-
225
-
231 Status createGroupIfDoesNotExist(const std::string& path) override;
-
232
-
233private:
-
234 std::unique_ptr<H5::H5File> file;
-
235};
-
-
236
-
-
244class HDF5RecordingData : public BaseRecordingData
-
245{
-
246public:
-
251 HDF5RecordingData(std::unique_ptr<H5::DataSet> data);
+
183 Status startRecording() override;
+
184
+
189 Status stopRecording() override;
+
190
+
197 bool canModifyObjects() override;
+
198
+
208 std::unique_ptr<BaseRecordingData> createArrayDataSet(
+
209 const BaseDataType& type,
+
210 const SizeArray& size,
+
211 const SizeArray& chunking,
+
212 const std::string& path) override;
+
213
+
219 std::unique_ptr<BaseRecordingData> getDataSet(
+
220 const std::string& path) override;
+
221
+
227 H5O_type_t getObjectType(const std::string& path);
+
228
+
234 static H5::DataType getNativeType(BaseDataType type);
+
235
+
241 static H5::DataType getH5Type(BaseDataType type);
+
242
+
243protected:
+
244 std::string filename;
+
245
+
251 Status createGroupIfDoesNotExist(const std::string& path) override;
252
-
256 HDF5RecordingData(const HDF5RecordingData&) = delete;
-
257
-
261 HDF5RecordingData& operator=(const HDF5RecordingData&) = delete;
-
262
-
266 ~HDF5RecordingData();
-
267
-
276 Status writeDataBlock(const std::vector<SizeType>& dataShape,
-
277 const std::vector<SizeType>& positionOffset,
-
278 const BaseDataType& type,
-
279 const void* data);
-
280
-
285 const H5::DataSet* getDataSet();
-
286
-
287private:
-
291 std::unique_ptr<H5::DataSet> dSet;
-
292
-
296 Status checkStatus(int status);
-
297};
+
253private:
+
254 std::unique_ptr<H5::H5File> file;
+
255 bool disableSWMRMode; // when set do not use SWMR mode when opening the HDF5
+
256 // file
+
257};
+
+
258
+
+
266class HDF5RecordingData : public BaseRecordingData
+
267{
+
268public:
+
273 HDF5RecordingData(std::unique_ptr<H5::DataSet> data);
+
274
+
278 HDF5RecordingData(const HDF5RecordingData&) = delete;
+
279
+
283 HDF5RecordingData& operator=(const HDF5RecordingData&) = delete;
+
284
+
288 ~HDF5RecordingData();
+
289
+
298 Status writeDataBlock(const std::vector<SizeType>& dataShape,
+
299 const std::vector<SizeType>& positionOffset,
+
300 const BaseDataType& type,
+
301 const void* data);
+
302
+
307 const H5::DataSet* getDataSet();
+
308
+
309private:
+
313 std::unique_ptr<H5::DataSet> dSet;
+
314
+
318 Status checkStatus(int status);
+
319};
-
298} // namespace AQNWB::HDF5
+
320} // namespace AQNWB::HDF5
BaseIO.hpp
SizeType
AQNWB::Types::SizeType SizeType
Definition BaseIO.hpp:16
@@ -243,33 +251,36 @@
Types.hpp
AQNWB::BaseDataType
Represents a base data type.
Definition BaseIO.hpp:31
AQNWB::BaseIO
The BaseIO class is an abstract base class that defines the interface for input/output (IO) operation...
Definition BaseIO.hpp:88
-
AQNWB::BaseRecordingData
The base class to represent recording data that can be extended.
Definition BaseIO.hpp:339
+
AQNWB::BaseRecordingData
The base class to represent recording data that can be extended.
Definition BaseIO.hpp:360
AQNWB::HDF5::HDF5IO
The HDF5IO class provides an interface for reading and writing data to HDF5 files.
Definition HDF5IO.hpp:29
-
AQNWB::HDF5::HDF5IO::createGroup
Status createGroup(const std::string &path) override
Creates a new group in the file.
Definition HDF5IO.cpp:272
-
AQNWB::HDF5::HDF5IO::createArrayDataSet
std::unique_ptr< BaseRecordingData > createArrayDataSet(const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path) override
Creates an extendable dataset with a given base data type, size, chunking, and path.
Definition HDF5IO.cpp:403
-
AQNWB::HDF5::HDF5IO::createLink
Status createLink(const std::string &path, const std::string &reference) override
Creates a soft link to another location in the file.
Definition HDF5IO.cpp:299
-
AQNWB::HDF5::HDF5IO::createAttribute
Status createAttribute(const BaseDataType &type, const void *data, const std::string &path, const std::string &name, const SizeType &size=1) override
Creates an attribute at a given location in the file.
Definition HDF5IO.cpp:81
-
AQNWB::HDF5::HDF5IO::createReferenceDataSet
Status createReferenceDataSet(const std::string &path, const std::vector< std::string > &references) override
Creates a dataset that holds an array of references to groups within the file.
Definition HDF5IO.cpp:310
-
AQNWB::HDF5::HDF5IO::HDF5IO
HDF5IO()
Default constructor for the HDF5IO class.
Definition HDF5IO.cpp:18
-
AQNWB::HDF5::HDF5IO::getNativeType
static H5::DataType getNativeType(BaseDataType type)
Returns the HDF5 native data type for a given base data type.
Definition HDF5IO.cpp:464
-
AQNWB::HDF5::HDF5IO::~HDF5IO
~HDF5IO()
Destructor for the HDF5IO class.
Definition HDF5IO.cpp:25
-
AQNWB::HDF5::HDF5IO::getH5Type
static H5::DataType getH5Type(BaseDataType type)
Returns the HDF5 data type for a given base data type.
Definition HDF5IO.cpp:515
-
AQNWB::HDF5::HDF5IO::createReferenceAttribute
Status createReferenceAttribute(const std::string &referencePath, const std::string &path, const std::string &name) override
Sets an object reference attribute for a given location in the file.
Definition HDF5IO.cpp:217
-
AQNWB::HDF5::HDF5IO::getFileName
std::string getFileName() override
Returns the full path to the HDF5 file.
Definition HDF5IO.cpp:30
-
AQNWB::HDF5::HDF5IO::close
Status close() override
Closes the file.
Definition HDF5IO.cpp:65
-
AQNWB::HDF5::HDF5IO::getDataSet
std::unique_ptr< BaseRecordingData > getDataSet(const std::string &path) override
Returns a pointer to a dataset at a given path.
Definition HDF5IO.cpp:380
-
AQNWB::HDF5::HDF5IO::createStringDataSet
Status createStringDataSet(const std::string &path, const std::string &value) override
Creates a non-modifiable dataset with a string value.
Definition HDF5IO.cpp:342
-
AQNWB::HDF5::HDF5IO::getObjectType
H5O_type_t getObjectType(const std::string &path)
Returns the HDF5 type of object at a given path.
Definition HDF5IO.cpp:447
-
AQNWB::HDF5::HDF5IO::open
Status open() override
Opens an existing file or creates a new file for writing.
Definition HDF5IO.cpp:35
-
AQNWB::HDF5::HDF5IO::createGroupIfDoesNotExist
Status createGroupIfDoesNotExist(const std::string &path) override
Creates a new group if it does not exist.
Definition HDF5IO.cpp:286
-
AQNWB::HDF5::HDF5IO::filename
std::string filename
Definition HDF5IO.hpp:224
-
AQNWB::HDF5::HDF5RecordingData
Represents an HDF5 Dataset that can be extended indefinitely in blocks.
Definition HDF5IO.hpp:245
-
AQNWB::HDF5::HDF5RecordingData::getDataSet
const H5::DataSet * getDataSet()
Gets a const pointer to the HDF5 dataset.
Definition HDF5IO.cpp:665
+
AQNWB::HDF5::HDF5IO::stopRecording
Status stopRecording() override
Stops the recording process.
Definition HDF5IO.cpp:404
+
AQNWB::HDF5::HDF5IO::createGroup
Status createGroup(const std::string &path) override
Creates a new group in the file.
Definition HDF5IO.cpp:278
+
AQNWB::HDF5::HDF5IO::createArrayDataSet
std::unique_ptr< BaseRecordingData > createArrayDataSet(const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path) override
Creates an extendable dataset with a given base data type, size, chunking, and path.
Definition HDF5IO.cpp:457
+
AQNWB::HDF5::HDF5IO::createLink
Status createLink(const std::string &path, const std::string &reference) override
Creates a soft link to another location in the file.
Definition HDF5IO.cpp:305
+
AQNWB::HDF5::HDF5IO::createAttribute
Status createAttribute(const BaseDataType &type, const void *data, const std::string &path, const std::string &name, const SizeType &size=1) override
Creates an attribute at a given location in the file.
Definition HDF5IO.cpp:87
+
AQNWB::HDF5::HDF5IO::createReferenceDataSet
Status createReferenceDataSet(const std::string &path, const std::vector< std::string > &references) override
Creates a dataset that holds an array of references to groups within the file.
Definition HDF5IO.cpp:319
+
AQNWB::HDF5::HDF5IO::HDF5IO
HDF5IO()
Default constructor for the HDF5IO class.
Definition HDF5IO.cpp:19
+
AQNWB::HDF5::HDF5IO::getNativeType
static H5::DataType getNativeType(BaseDataType type)
Returns the HDF5 native data type for a given base data type.
Definition HDF5IO.cpp:518
+
AQNWB::HDF5::HDF5IO::~HDF5IO
~HDF5IO()
Destructor for the HDF5IO class.
Definition HDF5IO.cpp:27
+
AQNWB::HDF5::HDF5IO::startRecording
Status startRecording() override
Start SWMR write to start recording process.
Definition HDF5IO.cpp:392
+
AQNWB::HDF5::HDF5IO::getH5Type
static H5::DataType getH5Type(BaseDataType type)
Returns the HDF5 data type for a given base data type.
Definition HDF5IO.cpp:569
+
AQNWB::HDF5::HDF5IO::createReferenceAttribute
Status createReferenceAttribute(const std::string &referencePath, const std::string &path, const std::string &name) override
Sets an object reference attribute for a given location in the file.
Definition HDF5IO.cpp:223
+
AQNWB::HDF5::HDF5IO::getFileName
std::string getFileName() override
Returns the full path to the HDF5 file.
Definition HDF5IO.cpp:32
+
AQNWB::HDF5::HDF5IO::close
Status close() override
Closes the file.
Definition HDF5IO.cpp:68
+
AQNWB::HDF5::HDF5IO::canModifyObjects
bool canModifyObjects() override
Checks whether the file is in a mode where objects can be added or deleted. Note, this does not apply...
Definition HDF5IO.cpp:415
+
AQNWB::HDF5::HDF5IO::getDataSet
std::unique_ptr< BaseRecordingData > getDataSet(const std::string &path) override
Returns a pointer to a dataset at a given path.
Definition HDF5IO.cpp:434
+
AQNWB::HDF5::HDF5IO::createStringDataSet
Status createStringDataSet(const std::string &path, const std::string &value) override
Creates a non-modifiable dataset with a string value.
Definition HDF5IO.cpp:354
+
AQNWB::HDF5::HDF5IO::getObjectType
H5O_type_t getObjectType(const std::string &path)
Returns the HDF5 type of object at a given path.
Definition HDF5IO.cpp:501
+
AQNWB::HDF5::HDF5IO::open
Status open() override
Opens an existing file or creates a new file for writing.
Definition HDF5IO.cpp:37
+
AQNWB::HDF5::HDF5IO::createGroupIfDoesNotExist
Status createGroupIfDoesNotExist(const std::string &path) override
Creates a new group if it does not exist.
Definition HDF5IO.cpp:292
+
AQNWB::HDF5::HDF5IO::filename
std::string filename
Definition HDF5IO.hpp:244
+
AQNWB::HDF5::HDF5RecordingData
Represents an HDF5 Dataset that can be extended indefinitely in blocks.
Definition HDF5IO.hpp:267
+
AQNWB::HDF5::HDF5RecordingData::getDataSet
const H5::DataSet * getDataSet()
Gets a const pointer to the HDF5 dataset.
Definition HDF5IO.cpp:719
AQNWB::HDF5::HDF5RecordingData::HDF5RecordingData
HDF5RecordingData(const HDF5RecordingData &)=delete
Deleted copy constructor to prevent construction-copying.
-
AQNWB::HDF5::HDF5RecordingData::writeDataBlock
Status writeDataBlock(const std::vector< SizeType > &dataShape, const std::vector< SizeType > &positionOffset, const BaseDataType &type, const void *data)
Writes a block of data to the HDF5 dataset.
Definition HDF5IO.cpp:597
-
AQNWB::HDF5::HDF5RecordingData::~HDF5RecordingData
~HDF5RecordingData()
Destroys the HDF5RecordingData object.
Definition HDF5IO.cpp:591
+
AQNWB::HDF5::HDF5RecordingData::writeDataBlock
Status writeDataBlock(const std::vector< SizeType > &dataShape, const std::vector< SizeType > &positionOffset, const BaseDataType &type, const void *data)
Writes a block of data to the HDF5 dataset.
Definition HDF5IO.cpp:651
+
AQNWB::HDF5::HDF5RecordingData::~HDF5RecordingData
~HDF5RecordingData()
Destroys the HDF5RecordingData object.
Definition HDF5IO.cpp:645
AQNWB::HDF5::HDF5RecordingData::operator=
HDF5RecordingData & operator=(const HDF5RecordingData &)=delete
Deleted copy assignment operator to prevent copying.
-
AQNWB::HDF5::HDF5RecordingData::HDF5RecordingData
HDF5RecordingData(std::unique_ptr< H5::DataSet > data)
Constructs an HDF5RecordingData object.
Definition HDF5IO.cpp:567
+
AQNWB::HDF5::HDF5RecordingData::HDF5RecordingData
HDF5RecordingData(std::unique_ptr< H5::DataSet > data)
Constructs an HDF5RecordingData object.
Definition HDF5IO.cpp:621
AQNWB::Types::Status
Status
Represents the status of an operation.
Definition Types.hpp:22
AQNWB::HDF5
Definition HDF5IO.hpp:21
H5
Definition HDF5IO.hpp:13
diff --git a/_n_w_b_file_8hpp_source.html b/_n_w_b_file_8hpp_source.html index 06a594c3..2847c5cb 100644 --- a/_n_w_b_file_8hpp_source.html +++ b/_n_w_b_file_8hpp_source.html @@ -130,65 +130,67 @@
39
43 ~NWBFile();
44
-
49 void initialize();
+
49 Status initialize();
50
-
54 void finalize();
+
54 Status finalize();
55
-
65 Status createElectricalSeries(
-
66 std::vector<Types::ChannelVector> recordingArrays,
-
67 const BaseDataType& dataType = BaseDataType::I16);
-
68
-
72 void stopRecording();
-
73
-
77 const std::string NWBVersion = "2.7.0";
-
78
-
82 const std::string HDMFVersion = "1.8.0";
-
83
-
87 const std::string HDMFExperimentalVersion = "0.5.0";
-
88
-
93 TimeSeries* getTimeSeries(const SizeType& timeseriesInd);
-
94
-
95protected:
-
100 Status createFileStructure();
-
101
-
102private:
-
112 std::unique_ptr<BaseRecordingData> createRecordingData(
-
113 BaseDataType type,
-
114 const SizeArray& size,
-
115 const SizeArray& chunking,
-
116 const std::string& path);
-
117
-
123 void cacheSpecifications(const std::string& specPath,
-
124 const std::string& versionNumber);
-
125
-
130 std::unique_ptr<RecordingContainers> recordingContainers =
-
131 std::make_unique<RecordingContainers>("RecordingContainers");
-
132
-
133 const std::string identifierText;
-
134 std::shared_ptr<BaseIO> io;
-
135};
- +
68 Status createElectricalSeries(
+
69 std::vector<Types::ChannelVector> recordingArrays,
+
70 const BaseDataType& dataType = BaseDataType::I16);
+
71
+
75 Status startRecording();
+
76
+
80 void stopRecording();
+
81
+
85 const std::string NWBVersion = "2.7.0";
+
86
+
90 const std::string HDMFVersion = "1.8.0";
+
91
+
95 const std::string HDMFExperimentalVersion = "0.5.0";
+
96
+
101 TimeSeries* getTimeSeries(const SizeType& timeseriesInd);
+
102
+
103protected:
+
111 Status createFileStructure();
+
112
+
113private:
+
123 std::unique_ptr<BaseRecordingData> createRecordingData(
+
124 BaseDataType type,
+
125 const SizeArray& size,
+
126 const SizeArray& chunking,
+
127 const std::string& path);
+
128
+
134 void cacheSpecifications(const std::string& specPath,
+
135 const std::string& versionNumber);
136
-
-
141class RecordingContainers
-
142{
-
143public:
-
148 RecordingContainers(const std::string& name);
-
149
-
153 RecordingContainers(const RecordingContainers&) = delete;
-
154
-
158 RecordingContainers& operator=(const RecordingContainers&) = delete;
-
159
-
163 ~RecordingContainers();
-
164
-
169 void addData(std::unique_ptr<TimeSeries> data);
+
141 std::unique_ptr<RecordingContainers> recordingContainers =
+
142 std::make_unique<RecordingContainers>("RecordingContainers");
+
143
+
144 const std::string identifierText;
+
145 std::shared_ptr<BaseIO> io;
+
146};
+
+
147
+
+
152class RecordingContainers
+
153{
+
154public:
+
159 RecordingContainers(const std::string& name);
+
160
+
164 RecordingContainers(const RecordingContainers&) = delete;
+
165
+
169 RecordingContainers& operator=(const RecordingContainers&) = delete;
170
-
171 std::vector<std::unique_ptr<TimeSeries>> containers;
-
172 std::string name;
-
173};
+
174 ~RecordingContainers();
+
175
+
180 void addData(std::unique_ptr<TimeSeries> data);
+
181
+
182 std::vector<std::unique_ptr<TimeSeries>> containers;
+
183 std::string name;
+
184};
-
174
-
175} // namespace AQNWB::NWB
+
185
+
186} // namespace AQNWB::NWB
BaseIO.hpp
SizeType
AQNWB::Types::SizeType SizeType
Definition BaseIO.hpp:16
SizeArray
AQNWB::Types::SizeArray SizeArray
Definition BaseIO.hpp:15
@@ -197,27 +199,28 @@
AQNWB::BaseDataType
Represents a base data type.
Definition BaseIO.hpp:31
AQNWB::BaseDataType::I16
static const BaseDataType I16
Accessor for signed 16-bit integer.
Definition BaseIO.hpp:68
AQNWB::NWB::NWBFile
The NWBFile class provides an interface for setting up and managing the NWB file.
Definition NWBFile.hpp:21
-
AQNWB::NWB::NWBFile::getTimeSeries
TimeSeries * getTimeSeries(const SizeType &timeseriesInd)
Gets the TimeSeries object from the recordingContainers.
Definition NWBFile.cpp:174
+
AQNWB::NWB::NWBFile::getTimeSeries
TimeSeries * getTimeSeries(const SizeType &timeseriesInd)
Gets the TimeSeries object from the recordingContainers.
Definition NWBFile.cpp:190
AQNWB::NWB::NWBFile::NWBFile
NWBFile(const NWBFile &)=delete
Deleted copy constructor to prevent construction-copying.
-
AQNWB::NWB::NWBFile::HDMFVersion
const std::string HDMFVersion
Indicates the HDMF schema version.
Definition NWBFile.hpp:82
-
AQNWB::NWB::NWBFile::stopRecording
void stopRecording()
Closes the relevant datasets.
Definition NWBFile.cpp:131
-
AQNWB::NWB::NWBFile::HDMFExperimentalVersion
const std::string HDMFExperimentalVersion
Indicates the HDMF experimental version.
Definition NWBFile.hpp:87
-
AQNWB::NWB::NWBFile::createElectricalSeries
Status createElectricalSeries(std::vector< Types::ChannelVector > recordingArrays, const BaseDataType &dataType=BaseDataType::I16)
Create ElectricalSeries objects to record data into. Created objects are stored in recordingContainer...
Definition NWBFile.cpp:81
+
AQNWB::NWB::NWBFile::initialize
Status initialize()
Initializes the NWB file by opening and setting up the file structure.
Definition NWBFile.cpp:33
+
AQNWB::NWB::NWBFile::HDMFVersion
const std::string HDMFVersion
Indicates the HDMF schema version.
Definition NWBFile.hpp:90
+
AQNWB::NWB::NWBFile::stopRecording
void stopRecording()
Stops the recording.
Definition NWBFile.cpp:144
+
AQNWB::NWB::NWBFile::HDMFExperimentalVersion
const std::string HDMFExperimentalVersion
Indicates the HDMF experimental version.
Definition NWBFile.hpp:95
+
AQNWB::NWB::NWBFile::createElectricalSeries
Status createElectricalSeries(std::vector< Types::ChannelVector > recordingArrays, const BaseDataType &dataType=BaseDataType::I16)
Create ElectricalSeries objects to record data into. Created objects are stored in recordingContainer...
Definition NWBFile.cpp:85
+
AQNWB::NWB::NWBFile::startRecording
Status startRecording()
Starts the recording.
Definition NWBFile.cpp:139
AQNWB::NWB::NWBFile::operator=
NWBFile & operator=(const NWBFile &)=delete
Deleted copy assignment operator to prevent copying.
AQNWB::NWB::NWBFile::~NWBFile
~NWBFile()
Destructor for NWBFile class.
Definition NWBFile.cpp:31
-
AQNWB::NWB::NWBFile::createFileStructure
Status createFileStructure()
Creates the default file structure.
Definition NWBFile.cpp:49
-
AQNWB::NWB::NWBFile::initialize
void initialize()
Initializes the NWB file by opening and setting up the file structure.
Definition NWBFile.cpp:33
+
AQNWB::NWB::NWBFile::createFileStructure
Status createFileStructure()
Creates the default file structure. Note, this function will fail if the file is in a mode where new ...
Definition NWBFile.cpp:49
AQNWB::NWB::NWBFile::NWBFile
NWBFile(const std::string &idText, std::shared_ptr< BaseIO > io)
Constructor for NWBFile class.
Definition NWBFile.cpp:25
-
AQNWB::NWB::NWBFile::finalize
void finalize()
Finalizes the NWB file by closing it.
Definition NWBFile.cpp:43
-
AQNWB::NWB::NWBFile::NWBVersion
const std::string NWBVersion
Indicates the NWB schema version.
Definition NWBFile.hpp:77
-
AQNWB::NWB::RecordingContainers
The RecordingContainers class provides an interface for managing groups of TimeSeries acquired during...
Definition NWBFile.hpp:142
-
AQNWB::NWB::RecordingContainers::addData
void addData(std::unique_ptr< TimeSeries > data)
Adds a TimeSeries object to the container.
Definition NWBFile.cpp:192
+
AQNWB::NWB::NWBFile::finalize
Status finalize()
Finalizes the NWB file by closing it.
Definition NWBFile.cpp:43
+
AQNWB::NWB::NWBFile::NWBVersion
const std::string NWBVersion
Indicates the NWB schema version.
Definition NWBFile.hpp:85
+
AQNWB::NWB::RecordingContainers
The RecordingContainers class provides an interface for managing groups of TimeSeries acquired during...
Definition NWBFile.hpp:153
+
AQNWB::NWB::RecordingContainers::addData
void addData(std::unique_ptr< TimeSeries > data)
Adds a TimeSeries object to the container.
Definition NWBFile.cpp:208
AQNWB::NWB::RecordingContainers::RecordingContainers
RecordingContainers(const RecordingContainers &)=delete
Deleted copy constructor to prevent construction-copying.
-
AQNWB::NWB::RecordingContainers::name
std::string name
Definition NWBFile.hpp:172
-
AQNWB::NWB::RecordingContainers::containers
std::vector< std::unique_ptr< TimeSeries > > containers
Definition NWBFile.hpp:171
+
AQNWB::NWB::RecordingContainers::name
std::string name
Definition NWBFile.hpp:183
+
AQNWB::NWB::RecordingContainers::containers
std::vector< std::unique_ptr< TimeSeries > > containers
Definition NWBFile.hpp:182
AQNWB::NWB::RecordingContainers::operator=
RecordingContainers & operator=(const RecordingContainers &)=delete
Deleted copy assignment operator to prevent copying.
-
AQNWB::NWB::RecordingContainers::~RecordingContainers
~RecordingContainers()
Destructor for RecordingContainer class.
Definition NWBFile.cpp:190
-
AQNWB::NWB::RecordingContainers::RecordingContainers
RecordingContainers(const std::string &name)
Constructor for RecordingContainer class.
Definition NWBFile.cpp:185
+
AQNWB::NWB::RecordingContainers::~RecordingContainers
~RecordingContainers()
Destructor for RecordingContainer class.
Definition NWBFile.cpp:206
+
AQNWB::NWB::RecordingContainers::RecordingContainers
RecordingContainers(const std::string &name)
Constructor for RecordingContainer class.
Definition NWBFile.cpp:201
AQNWB::NWB::TimeSeries
General purpose time series.
Definition TimeSeries.hpp:14
AQNWB::Types::Status
Status
Represents the status of an operation.
Definition Types.hpp:22
AQNWB::NWB
Definition TimeSeries.hpp:9
diff --git a/_n_w_b_recording_8hpp_source.html b/_n_w_b_recording_8hpp_source.html index 656b65d8..ba6d3c7b 100644 --- a/_n_w_b_recording_8hpp_source.html +++ b/_n_w_b_recording_8hpp_source.html @@ -148,13 +148,13 @@
Types.hpp
AQNWB::Channel
Class for storing acquisition system channel information.
Definition Channel.hpp:16
AQNWB::NWB::NWBRecording
The NWBRecording class manages the recording process.
Definition NWBRecording.hpp:13
-
AQNWB::NWB::NWBRecording::writeTimeseriesData
Status writeTimeseriesData(const std::string &containerName, const SizeType &timeseriesInd, const Channel &channel, const std::vector< SizeType > &dataShape, const std::vector< SizeType > &positionOffset, const void *data, const void *timestamps)
Write timeseries to an NWB file.
Definition NWBRecording.cpp:43
+
AQNWB::NWB::NWBRecording::writeTimeseriesData
Status writeTimeseriesData(const std::string &containerName, const SizeType &timeseriesInd, const Channel &channel, const std::vector< SizeType > &dataShape, const std::vector< SizeType > &positionOffset, const void *data, const void *timestamps)
Write timeseries to an NWB file.
Definition NWBRecording.cpp:45
AQNWB::NWB::NWBRecording::openFile
Status openFile(const std::string &rootFolder, const std::string &baseName, int experimentNumber, std::vector< Types::ChannelVector > recordingArrays, const std::string &IOType="HDF5")
Opens the file for recording.
Definition NWBRecording.cpp:19
AQNWB::NWB::NWBRecording::NWBRecording
NWBRecording()
Default constructor for NWBRecording.
Definition NWBRecording.cpp:10
AQNWB::NWB::NWBRecording::operator=
NWBRecording & operator=(const NWBRecording &)=delete
Deleted copy assignment operator to prevent copying.
AQNWB::NWB::NWBRecording::NWBRecording
NWBRecording(const NWBRecording &)=delete
Deleted copy constructor to prevent construction-copying.
AQNWB::NWB::NWBRecording::~NWBRecording
~NWBRecording()
Destructor for NWBRecordingEngine.
Definition NWBRecording.cpp:12
-
AQNWB::NWB::NWBRecording::closeFile
void closeFile()
Closes the file and performs necessary cleanup when recording stops.
Definition NWBRecording.cpp:37
+
AQNWB::NWB::NWBRecording::closeFile
void closeFile()
Closes the file and performs necessary cleanup when recording stops.
Definition NWBRecording.cpp:40
AQNWB::Types::Status
Status
Represents the status of an operation.
Definition Types.hpp:22
AQNWB::NWB
Definition TimeSeries.hpp:9
diff --git a/class_a_q_n_w_b_1_1_base_i_o-members.html b/class_a_q_n_w_b_1_1_base_i_o-members.html index ace4d4e3..82d2c6be 100644 --- a/class_a_q_n_w_b_1_1_base_i_o-members.html +++ b/class_a_q_n_w_b_1_1_base_i_o-members.html @@ -108,33 +108,36 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
BaseIO()AQNWB::BaseIO
BaseIO(const BaseIO &)=deleteAQNWB::BaseIO
close()=0AQNWB::BaseIOpure virtual
createArrayDataSet(const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path)=0AQNWB::BaseIOpure virtual
createAttribute(const BaseDataType &type, const void *data, const std::string &path, const std::string &name, const SizeType &size=1)=0AQNWB::BaseIOpure virtual
createAttribute(const std::string &data, const std::string &path, const std::string &name)=0AQNWB::BaseIOpure virtual
createAttribute(const std::vector< std::string > &data, const std::string &path, const std::string &name)=0AQNWB::BaseIOpure virtual
createAttribute(const std::vector< const char * > &data, const std::string &path, const std::string &name, const SizeType &maxSize)=0AQNWB::BaseIOpure virtual
createCommonNWBAttributes(const std::string &path, const std::string &objectNamespace, const std::string &neurodataType="", const std::string &description="")AQNWB::BaseIO
createDataAttributes(const std::string &path, const float &conversion, const float &resolution, const std::string &unit)AQNWB::BaseIO
createGroup(const std::string &path)=0AQNWB::BaseIOpure virtual
createGroupIfDoesNotExist(const std::string &path)=0AQNWB::BaseIOprotectedpure virtual
createLink(const std::string &path, const std::string &reference)=0AQNWB::BaseIOpure virtual
createReferenceAttribute(const std::string &referencePath, const std::string &path, const std::string &name)=0AQNWB::BaseIOpure virtual
createReferenceDataSet(const std::string &path, const std::vector< std::string > &references)=0AQNWB::BaseIOpure virtual
createStringDataSet(const std::string &path, const std::string &value)=0AQNWB::BaseIOpure virtual
createStringDataSet(const std::string &path, const std::vector< std::string > &values)=0AQNWB::BaseIOpure virtual
createTimestampsAttributes(const std::string &path)AQNWB::BaseIO
filenameAQNWB::BaseIO
getDataSet(const std::string &path)=0AQNWB::BaseIOpure virtual
getFileName()=0AQNWB::BaseIOpure virtual
isOpen() constAQNWB::BaseIO
isReadyToOpen() constAQNWB::BaseIO
open()=0AQNWB::BaseIOpure virtual
open(bool newfile)=0AQNWB::BaseIOpure virtual
openedAQNWB::BaseIOprotected
operator=(const BaseIO &)=deleteAQNWB::BaseIO
readyToOpenAQNWB::BaseIOprotected
~BaseIO()AQNWB::BaseIOvirtual
canModifyObjects()AQNWB::BaseIOvirtual
close()=0AQNWB::BaseIOpure virtual
createArrayDataSet(const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path)=0AQNWB::BaseIOpure virtual
createAttribute(const BaseDataType &type, const void *data, const std::string &path, const std::string &name, const SizeType &size=1)=0AQNWB::BaseIOpure virtual
createAttribute(const std::string &data, const std::string &path, const std::string &name)=0AQNWB::BaseIOpure virtual
createAttribute(const std::vector< std::string > &data, const std::string &path, const std::string &name)=0AQNWB::BaseIOpure virtual
createAttribute(const std::vector< const char * > &data, const std::string &path, const std::string &name, const SizeType &maxSize)=0AQNWB::BaseIOpure virtual
createCommonNWBAttributes(const std::string &path, const std::string &objectNamespace, const std::string &neurodataType="", const std::string &description="")AQNWB::BaseIO
createDataAttributes(const std::string &path, const float &conversion, const float &resolution, const std::string &unit)AQNWB::BaseIO
createGroup(const std::string &path)=0AQNWB::BaseIOpure virtual
createGroupIfDoesNotExist(const std::string &path)=0AQNWB::BaseIOprotectedpure virtual
createLink(const std::string &path, const std::string &reference)=0AQNWB::BaseIOpure virtual
createReferenceAttribute(const std::string &referencePath, const std::string &path, const std::string &name)=0AQNWB::BaseIOpure virtual
createReferenceDataSet(const std::string &path, const std::vector< std::string > &references)=0AQNWB::BaseIOpure virtual
createStringDataSet(const std::string &path, const std::string &value)=0AQNWB::BaseIOpure virtual
createStringDataSet(const std::string &path, const std::vector< std::string > &values)=0AQNWB::BaseIOpure virtual
createTimestampsAttributes(const std::string &path)AQNWB::BaseIO
filenameAQNWB::BaseIO
getDataSet(const std::string &path)=0AQNWB::BaseIOpure virtual
getFileName()=0AQNWB::BaseIOpure virtual
isOpen() constAQNWB::BaseIO
isReadyToOpen() constAQNWB::BaseIO
open()=0AQNWB::BaseIOpure virtual
open(bool newfile)=0AQNWB::BaseIOpure virtual
openedAQNWB::BaseIOprotected
operator=(const BaseIO &)=deleteAQNWB::BaseIO
readyToOpenAQNWB::BaseIOprotected
startRecording()=0AQNWB::BaseIOpure virtual
stopRecording()=0AQNWB::BaseIOpure virtual
~BaseIO()AQNWB::BaseIOvirtual
diff --git a/class_a_q_n_w_b_1_1_base_i_o.html b/class_a_q_n_w_b_1_1_base_i_o.html index d5154569..d25f6d55 100644 --- a/class_a_q_n_w_b_1_1_base_i_o.html +++ b/class_a_q_n_w_b_1_1_base_i_o.html @@ -176,6 +176,15 @@ virtual Status createReferenceDataSet (const std::string &path, const std::vector< std::string > &references)=0  Creates a dataset that holds an array of references to groups within the file.
  +virtual Status startRecording ()=0 + Starts the recording process.
+  +virtual Status stopRecording ()=0 + Stops the recording process.
+  +virtual bool canModifyObjects () + Returns true if the file is in a mode where objects can be added or deleted. Note, this does not apply to the modification of raw data on already existing objects. Derived classes should override this function to check if objects can be modified.
+  virtual std::unique_ptr< BaseRecordingDatacreateArrayDataSet (const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path)=0  Creates an extendable dataset with a given base data type, size, chunking, and path.
  @@ -298,6 +307,36 @@

Member Function Documentation

+ +

◆ canModifyObjects()

+ +
+
+ + + + + +
+ + + + + + + +
bool BaseIO::canModifyObjects ()
+
+virtual
+
+ +

Returns true if the file is in a mode where objects can be added or deleted. Note, this does not apply to the modification of raw data on already existing objects. Derived classes should override this function to check if objects can be modified.

+
Returns
True if the file is in a modification mode, false otherwise.
+ +

Reimplemented in AQNWB::HDF5::HDF5IO.

+ +
+

◆ close()

@@ -1179,6 +1218,66 @@

+

◆ startRecording()

+ +
+
+ + + + + +
+ + + + + + + +
virtual Status AQNWB::BaseIO::startRecording ()
+
+pure virtual
+
+ +

Starts the recording process.

+
Returns
The status of the operation.
+ +

Implemented in AQNWB::HDF5::HDF5IO.

+ +
+
+ +

◆ stopRecording()

+ +
+
+ + + + + +
+ + + + + + + +
virtual Status AQNWB::BaseIO::stopRecording ()
+
+pure virtual
+
+ +

Stops the recording process.

+
Returns
The status of the operation.
+ +

Implemented in AQNWB::HDF5::HDF5IO.

+

Member Data Documentation

diff --git a/class_a_q_n_w_b_1_1_base_i_o.js b/class_a_q_n_w_b_1_1_base_i_o.js index 50ff652a..0b97ab43 100644 --- a/class_a_q_n_w_b_1_1_base_i_o.js +++ b/class_a_q_n_w_b_1_1_base_i_o.js @@ -3,6 +3,7 @@ var class_a_q_n_w_b_1_1_base_i_o = [ "BaseIO", "class_a_q_n_w_b_1_1_base_i_o.html#a8114613f475912702b60fff42487ccec", null ], [ "BaseIO", "class_a_q_n_w_b_1_1_base_i_o.html#a2d0721791d637615d2aa1077ab14b3dc", null ], [ "~BaseIO", "class_a_q_n_w_b_1_1_base_i_o.html#a7696f24a4136179a56625121069240de", null ], + [ "canModifyObjects", "class_a_q_n_w_b_1_1_base_i_o.html#aaefc2224d74e9b93d57fff7d2db97987", null ], [ "close", "class_a_q_n_w_b_1_1_base_i_o.html#a91626ce239076906438ac57c487381b5", null ], [ "createArrayDataSet", "class_a_q_n_w_b_1_1_base_i_o.html#a8f164bf725a27fbe7ae98ea7f9332571", null ], [ "createAttribute", "class_a_q_n_w_b_1_1_base_i_o.html#a1beea899337fca501cbce460556cf66a", null ], @@ -26,6 +27,8 @@ var class_a_q_n_w_b_1_1_base_i_o = [ "open", "class_a_q_n_w_b_1_1_base_i_o.html#a26db4d160e12cd2558bd500bf71c6a8e", null ], [ "open", "class_a_q_n_w_b_1_1_base_i_o.html#afbb3379a03bb27f489ad6529c363ecd1", null ], [ "operator=", "class_a_q_n_w_b_1_1_base_i_o.html#a2822242cb44f428da6ef6ec036b1b31d", null ], + [ "startRecording", "class_a_q_n_w_b_1_1_base_i_o.html#a5ccc2f05f0a3ba63925890f78684d39f", null ], + [ "stopRecording", "class_a_q_n_w_b_1_1_base_i_o.html#a182079752b5a215ccfeeedafdee56d50", null ], [ "filename", "class_a_q_n_w_b_1_1_base_i_o.html#a9216c5b8bf33ad420f19a704357659a4", null ], [ "opened", "class_a_q_n_w_b_1_1_base_i_o.html#a0f5c5684c8427842a10c15d159a30abd", null ], [ "readyToOpen", "class_a_q_n_w_b_1_1_base_i_o.html#ad31fbf7547f2fa545b0fbac8a2f3b003", null ] diff --git a/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o-members.html b/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o-members.html index 64c7d2f5..648ce25c 100644 --- a/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o-members.html +++ b/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o-members.html @@ -108,39 +108,42 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
BaseIO()AQNWB::BaseIO
BaseIO(const BaseIO &)=deleteAQNWB::BaseIO
close() overrideAQNWB::HDF5::HDF5IOvirtual
createArrayDataSet(const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const BaseDataType &type, const void *data, const std::string &path, const std::string &name, const SizeType &size=1) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const std::string &data, const std::string &path, const std::string &name) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const std::vector< std::string > &data, const std::string &path, const std::string &name) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const std::vector< const char * > &data, const std::string &path, const std::string &name, const SizeType &maxSize) overrideAQNWB::HDF5::HDF5IOvirtual
createCommonNWBAttributes(const std::string &path, const std::string &objectNamespace, const std::string &neurodataType="", const std::string &description="")AQNWB::BaseIO
createDataAttributes(const std::string &path, const float &conversion, const float &resolution, const std::string &unit)AQNWB::BaseIO
createGroup(const std::string &path) overrideAQNWB::HDF5::HDF5IOvirtual
createGroupIfDoesNotExist(const std::string &path) overrideAQNWB::HDF5::HDF5IOprotectedvirtual
createLink(const std::string &path, const std::string &reference) overrideAQNWB::HDF5::HDF5IOvirtual
createReferenceAttribute(const std::string &referencePath, const std::string &path, const std::string &name) overrideAQNWB::HDF5::HDF5IOvirtual
createReferenceDataSet(const std::string &path, const std::vector< std::string > &references) overrideAQNWB::HDF5::HDF5IOvirtual
createStringDataSet(const std::string &path, const std::string &value) overrideAQNWB::HDF5::HDF5IOvirtual
createStringDataSet(const std::string &path, const std::vector< std::string > &values) overrideAQNWB::HDF5::HDF5IOvirtual
createTimestampsAttributes(const std::string &path)AQNWB::BaseIO
filenameAQNWB::HDF5::HDF5IOprotected
getDataSet(const std::string &path) overrideAQNWB::HDF5::HDF5IOvirtual
getFileName() overrideAQNWB::HDF5::HDF5IOvirtual
getH5Type(BaseDataType type)AQNWB::HDF5::HDF5IOstatic
getNativeType(BaseDataType type)AQNWB::HDF5::HDF5IOstatic
getObjectType(const std::string &path)AQNWB::HDF5::HDF5IO
HDF5IO()AQNWB::HDF5::HDF5IO
HDF5IO(const std::string &fileName)AQNWB::HDF5::HDF5IO
isOpen() constAQNWB::BaseIO
isReadyToOpen() constAQNWB::BaseIO
open() overrideAQNWB::HDF5::HDF5IOvirtual
open(bool newfile) overrideAQNWB::HDF5::HDF5IOvirtual
openedAQNWB::BaseIOprotected
operator=(const BaseIO &)=deleteAQNWB::BaseIO
readyToOpenAQNWB::BaseIOprotected
~BaseIO()AQNWB::BaseIOvirtual
~HDF5IO()AQNWB::HDF5::HDF5IO
canModifyObjects() overrideAQNWB::HDF5::HDF5IOvirtual
close() overrideAQNWB::HDF5::HDF5IOvirtual
createArrayDataSet(const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const BaseDataType &type, const void *data, const std::string &path, const std::string &name, const SizeType &size=1) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const std::string &data, const std::string &path, const std::string &name) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const std::vector< std::string > &data, const std::string &path, const std::string &name) overrideAQNWB::HDF5::HDF5IOvirtual
createAttribute(const std::vector< const char * > &data, const std::string &path, const std::string &name, const SizeType &maxSize) overrideAQNWB::HDF5::HDF5IOvirtual
createCommonNWBAttributes(const std::string &path, const std::string &objectNamespace, const std::string &neurodataType="", const std::string &description="")AQNWB::BaseIO
createDataAttributes(const std::string &path, const float &conversion, const float &resolution, const std::string &unit)AQNWB::BaseIO
createGroup(const std::string &path) overrideAQNWB::HDF5::HDF5IOvirtual
createGroupIfDoesNotExist(const std::string &path) overrideAQNWB::HDF5::HDF5IOprotectedvirtual
createLink(const std::string &path, const std::string &reference) overrideAQNWB::HDF5::HDF5IOvirtual
createReferenceAttribute(const std::string &referencePath, const std::string &path, const std::string &name) overrideAQNWB::HDF5::HDF5IOvirtual
createReferenceDataSet(const std::string &path, const std::vector< std::string > &references) overrideAQNWB::HDF5::HDF5IOvirtual
createStringDataSet(const std::string &path, const std::string &value) overrideAQNWB::HDF5::HDF5IOvirtual
createStringDataSet(const std::string &path, const std::vector< std::string > &values) overrideAQNWB::HDF5::HDF5IOvirtual
createTimestampsAttributes(const std::string &path)AQNWB::BaseIO
filenameAQNWB::HDF5::HDF5IOprotected
getDataSet(const std::string &path) overrideAQNWB::HDF5::HDF5IOvirtual
getFileName() overrideAQNWB::HDF5::HDF5IOvirtual
getH5Type(BaseDataType type)AQNWB::HDF5::HDF5IOstatic
getNativeType(BaseDataType type)AQNWB::HDF5::HDF5IOstatic
getObjectType(const std::string &path)AQNWB::HDF5::HDF5IO
HDF5IO()AQNWB::HDF5::HDF5IO
HDF5IO(const std::string &fileName, const bool disableSWMRMode=false)AQNWB::HDF5::HDF5IO
isOpen() constAQNWB::BaseIO
isReadyToOpen() constAQNWB::BaseIO
open() overrideAQNWB::HDF5::HDF5IOvirtual
open(bool newfile) overrideAQNWB::HDF5::HDF5IOvirtual
openedAQNWB::BaseIOprotected
operator=(const BaseIO &)=deleteAQNWB::BaseIO
readyToOpenAQNWB::BaseIOprotected
startRecording() overrideAQNWB::HDF5::HDF5IOvirtual
stopRecording() overrideAQNWB::HDF5::HDF5IOvirtual
~BaseIO()AQNWB::BaseIOvirtual
~HDF5IO()AQNWB::HDF5::HDF5IO
diff --git a/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html b/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html index 07811444..19c45666 100644 --- a/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html +++ b/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html @@ -130,9 +130,9 @@  HDF5IO ()  Default constructor for the HDF5IO class.
  - HDF5IO (const std::string &fileName) - Constructor for the HDF5IO class that takes a file name as input.
-  + HDF5IO (const std::string &fileName, const bool disableSWMRMode=false) + Constructor for the HDF5IO class that takes a file name as input.
+   ~HDF5IO ()  Destructor for the HDF5IO class.
  @@ -178,6 +178,15 @@ Status createReferenceDataSet (const std::string &path, const std::vector< std::string > &references) override  Creates a dataset that holds an array of references to groups within the file.
  +Status startRecording () override + Start SWMR write to start recording process.
+  +Status stopRecording () override + Stops the recording process.
+  +bool canModifyObjects () override + Checks whether the file is in a mode where objects can be added or deleted. Note, this does not apply to the modification of raw data on already existing objects.
+  std::unique_ptr< BaseRecordingDatacreateArrayDataSet (const BaseDataType &type, const SizeArray &size, const SizeArray &chunking, const std::string &path) override  Creates an extendable dataset with a given base data type, size, chunking, and path.
  @@ -272,8 +281,8 @@

-

◆ HDF5IO() [2/2]

+ +

◆ HDF5IO() [2/2]

@@ -317,6 +330,36 @@

Member Function Documentation

+ +

◆ canModifyObjects()

+ +
+
+ + + + + +
+ + + + + + + +
bool HDF5IO::canModifyObjects ()
+
+overridevirtual
+
+ +

Checks whether the file is in a mode where objects can be added or deleted. Note, this does not apply to the modification of raw data on already existing objects.

+
Returns
Whether objects can be modified.
+ +

Reimplemented from AQNWB::BaseIO.

+ +
+

◆ close()

@@ -1114,6 +1157,66 @@

AQNWB::BaseIO.

+

+
+ +

◆ startRecording()

+ +
+
+ + + + + +
+ + + + + + + +
Status HDF5IO::startRecording ()
+
+overridevirtual
+
+ +

Start SWMR write to start recording process.

+
Returns
The status of the start recording operation.
+ +

Implements AQNWB::BaseIO.

+ +
+
+ +

◆ stopRecording()

+ +
+
+ + + + + +
+ + + + + + + +
Status HDF5IO::stopRecording ()
+
+overridevirtual
+
+ +

Stops the recording process.

+
Returns
The status of the stop recording operation.
+ +

Implements AQNWB::BaseIO.

+

Member Data Documentation

diff --git a/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.js b/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.js index fab63288..252ba5d5 100644 --- a/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.js +++ b/class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.js @@ -1,8 +1,9 @@ var class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o = [ [ "HDF5IO", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a5b7e7f43edffa80553e2bf2d0d4bffa6", null ], - [ "HDF5IO", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a97f6a87e029f8fc6dad03ffecde8f2ce", null ], + [ "HDF5IO", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#aaf848d1a42512f90e9c9a0e134508bb8", null ], [ "~HDF5IO", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a7a4c82820e1ad91a82c90c30dfb937fe", null ], + [ "canModifyObjects", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a96d8d872b2b974ac79a20b82fd72c5c2", null ], [ "close", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a969eb3d7ab2d93c5a83b58f27773e16f", null ], [ "createArrayDataSet", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a2ed549816b5605817aa7ccc2e6c7c4cc", null ], [ "createAttribute", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a41b29c0a44b9cf1778f8b0883834be36", null ], @@ -21,5 +22,7 @@ var class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o = [ "getObjectType", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#ac8558bac2f0bdb98dc5cd87e8d45f095", null ], [ "open", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#af13e43a73e40b98dcacd9cc587536143", null ], [ "open", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#af1f8dc9dc57a5d1460707bd162fffe3f", null ], + [ "startRecording", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a8606979d328123bb7bd8efa9df85c6df", null ], + [ "stopRecording", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#a0cfc2191ccfc122fa5098d4c4b4117b5", null ], [ "filename", "class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#af901d3aedd572ff718df7b81e665cc70", null ] ]; \ No newline at end of file diff --git a/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file-members.html b/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file-members.html index 547eade2..b65e6e49 100644 --- a/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file-members.html +++ b/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file-members.html @@ -108,17 +108,18 @@ - + - + - - + + +
createElectricalSeries(std::vector< Types::ChannelVector > recordingArrays, const BaseDataType &dataType=BaseDataType::I16)AQNWB::NWB::NWBFile
createFileStructure()AQNWB::NWB::NWBFileprotected
finalize()AQNWB::NWB::NWBFile
finalize()AQNWB::NWB::NWBFile
getTimeSeries(const SizeType &timeseriesInd)AQNWB::NWB::NWBFile
HDMFExperimentalVersionAQNWB::NWB::NWBFile
HDMFVersionAQNWB::NWB::NWBFile
initialize()AQNWB::NWB::NWBFile
initialize()AQNWB::NWB::NWBFile
NWBFile(const std::string &idText, std::shared_ptr< BaseIO > io)AQNWB::NWB::NWBFile
NWBFile(const NWBFile &)=deleteAQNWB::NWB::NWBFile
NWBVersionAQNWB::NWB::NWBFile
operator=(const NWBFile &)=deleteAQNWB::NWB::NWBFile
stopRecording()AQNWB::NWB::NWBFile
~NWBFile()AQNWB::NWB::NWBFile
startRecording()AQNWB::NWB::NWBFile
stopRecording()AQNWB::NWB::NWBFile
~NWBFile()AQNWB::NWB::NWBFile
diff --git a/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html b/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html index bfff7ad9..cf4bcb03 100644 --- a/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html +++ b/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html @@ -128,17 +128,20 @@  ~NWBFile ()  Destructor for NWBFile class.
  -void initialize () - Initializes the NWB file by opening and setting up the file structure.
-  -void finalize () - Finalizes the NWB file by closing it.
-  +Status initialize () + Initializes the NWB file by opening and setting up the file structure.
+  +Status finalize () + Finalizes the NWB file by closing it.
Status createElectricalSeries (std::vector< Types::ChannelVector > recordingArrays, const BaseDataType &dataType=BaseDataType::I16) - Create ElectricalSeries objects to record data into. Created objects are stored in recordingContainers.
+ Create ElectricalSeries objects to record data into. Created objects are stored in recordingContainers. Note, this function will fail if the file is in a mode where new objects cannot be added, which can be checked via nwbfile.io->canModifyObjects()
  +Status startRecording () + Starts the recording.
+  void stopRecording () - Closes the relevant datasets.
+ Stops the recording.
  TimeSeriesgetTimeSeries (const SizeType &timeseriesInd)  Gets the TimeSeries object from the recordingContainers.
@@ -159,7 +162,7 @@

Protected Member Functions

Status createFileStructure () - Creates the default file structure.
+ Creates the default file structure. Note, this function will fail if the file is in a mode where new objects cannot be added, which can be checked via nwbfile.io->canModifyObjects()
 

Detailed Description

@@ -261,10 +264,10 @@

-

Create ElectricalSeries objects to record data into. Created objects are stored in recordingContainers.

+

Create ElectricalSeries objects to record data into. Created objects are stored in recordingContainers. Note, this function will fail if the file is in a mode where new objects cannot be added, which can be checked via nwbfile.io->canModifyObjects()

Parameters
- +
recordingArraysvector of ChannelVector indicating the electrodes to record from. A separate ElectricalSeries will be created for each ChannelVector
recordingArraysvector of ChannelVector indicating the electrodes to record from. A separate ElectricalSeries will be created for each ChannelVector.
dataTypeThe data type of the elements in the data block.
@@ -296,19 +299,19 @@

-

Creates the default file structure.

+

Creates the default file structure. Note, this function will fail if the file is in a mode where new objects cannot be added, which can be checked via nwbfile.io->canModifyObjects()

Returns
Status The status of the file structure creation.
-
-

◆ finalize()

+ +

◆ finalize()

- + @@ -345,14 +348,14 @@

-

◆ initialize()

+ +

◆ initialize()

void NWBFile::finalize Status NWBFile::finalize ( )
- + @@ -389,6 +392,25 @@

+

◆ startRecording()

+ +
+
+

void NWBFile::initialize Status NWBFile::initialize ( )
+ + + + + + +
Status NWBFile::startRecording ()
+
+ +

Starts the recording.

+
@@ -406,7 +428,7 @@

-

Closes the relevant datasets.

+

Stops the recording.

diff --git a/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.js b/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.js index 7af05a68..16870d01 100644 --- a/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.js +++ b/class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.js @@ -5,10 +5,11 @@ var class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file = [ "~NWBFile", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#aa92925025c0a04da1d6b03b82af99da3", null ], [ "createElectricalSeries", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a825990d044b4351788590210440bcdac", null ], [ "createFileStructure", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#ab67a18abb35c3f280a437b906dd6a82e", null ], - [ "finalize", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#add9716af464c4e3cdef6eabc719be127", null ], + [ "finalize", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#af7b3285fd7e02b444372fb1ab4341674", null ], [ "getTimeSeries", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a2f99f38468fdb727adb9500a475b9d12", null ], - [ "initialize", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#ab7ea3337dbfaa6c403f03bdcf8cad38b", null ], + [ "initialize", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a49d305931788b0f57a04a557b46d6596", null ], [ "operator=", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a941d5b775441fac6c787cd55a8276461", null ], + [ "startRecording", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a902d040b7b4b811eb7d7ebeb65f90dbe", null ], [ "stopRecording", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a725e81c69195c8a9616aa4d2e7c21cb0", null ], [ "HDMFExperimentalVersion", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a7e787fd25b2117c1a922813bbcc5da2e", null ], [ "HDMFVersion", "class_a_q_n_w_b_1_1_n_w_b_1_1_n_w_b_file.html#a63c5b473dd46c9aa469431057e2e9559", null ], diff --git a/doxygen_crawl.html b/doxygen_crawl.html index 95db4e51..21d174fd 100644 --- a/doxygen_crawl.html +++ b/doxygen_crawl.html @@ -285,6 +285,7 @@
+ @@ -297,6 +298,7 @@ + @@ -306,6 +308,7 @@ + @@ -337,6 +340,7 @@ + @@ -347,13 +351,15 @@ + + - + @@ -426,16 +432,17 @@ + + - - + diff --git a/functions_c.html b/functions_c.html index 079b47e0..e64b6c2b 100644 --- a/functions_c.html +++ b/functions_c.html @@ -103,6 +103,7 @@
Here is a list of all class members with links to the classes they belong to:

- c -

    +
  • canModifyObjects() : AQNWB::BaseIO, AQNWB::HDF5::HDF5IO
  • Channel() : AQNWB::Channel
  • channelConversion : AQNWB::NWB::ElectricalSeries
  • ChannelVector : AQNWB::Types
  • diff --git a/functions_f.html b/functions_f.html index 63bd2b78..8d39d0b3 100644 --- a/functions_f.html +++ b/functions_f.html @@ -107,7 +107,7 @@

    - f -

    diff --git a/functions_func.html b/functions_func.html index 43d828b7..675cf9a7 100644 --- a/functions_func.html +++ b/functions_func.html @@ -117,6 +117,7 @@

    - b -

      - c -

        +
      • canModifyObjects() : AQNWB::BaseIO, AQNWB::HDF5::HDF5IO
      • Channel() : AQNWB::Channel
      • close() : AQNWB::BaseIO, AQNWB::HDF5::HDF5IO
      • closeFile() : AQNWB::NWB::NWBRecording
      • @@ -152,7 +153,7 @@

        - e -

          - f -

          @@ -183,7 +184,7 @@

          - h -

            - i -

            @@ -211,7 +212,8 @@

            - s -

            diff --git a/functions_i.html b/functions_i.html index 634b987f..723f4896 100644 --- a/functions_i.html +++ b/functions_i.html @@ -107,7 +107,7 @@

            - i -

            • I32 : AQNWB::BaseDataType
            • I64 : AQNWB::BaseDataType
            • I8 : AQNWB::BaseDataType
            • -
            • initialize() : AQNWB::NWB::Container, AQNWB::NWB::Device, AQNWB::NWB::DynamicTable, AQNWB::NWB::ElectricalSeries, AQNWB::NWB::ElectrodeGroup, AQNWB::NWB::ElectrodeTable, AQNWB::NWB::NWBFile, AQNWB::NWB::TimeSeries
            • +
            • initialize() : AQNWB::NWB::Container, AQNWB::NWB::Device, AQNWB::NWB::DynamicTable, AQNWB::NWB::ElectricalSeries, AQNWB::NWB::ElectrodeGroup, AQNWB::NWB::ElectrodeTable, AQNWB::NWB::NWBFile, AQNWB::NWB::TimeSeries
            • io : AQNWB::NWB::Container
            • isOpen() : AQNWB::BaseIO
            • isReadyToOpen() : AQNWB::BaseIO
            • diff --git a/functions_s.html b/functions_s.html index 828dd868..488d9a0e 100644 --- a/functions_s.html +++ b/functions_s.html @@ -110,8 +110,9 @@

              - s -

              diff --git a/index.html b/index.html index dd5b912e..b94c2bd5 100644 --- a/index.html +++ b/index.html @@ -117,7 +117,7 @@

              • A C++17-compliant compiler
              • CMake >= 3.15
              • -
              • HDF5
              • +
              • HDF5 >= 1.10
              • Boost
              • Additional requirements for building the documentation (optional)
                • Doxygen
                • diff --git a/navtreedata.js b/navtreedata.js index 88fdc33a..db083bac 100644 --- a/navtreedata.js +++ b/navtreedata.js @@ -65,8 +65,8 @@ var NAVTREE = var NAVTREEINDEX = [ "_base_i_o_8cpp.html", -"class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_recording_data.html#a422ceb2efa97e3d72b34f695351b87dc", -"functions_b.html" +"class_a_q_n_w_b_1_1_h_d_f5_1_1_h_d_f5_i_o.html#af13e43a73e40b98dcacd9cc587536143", +"dir_2c5b7fd6b972088aa6b0c8b33452cfb2.html" ]; var SYNCONMSG = 'click to disable panel synchronisation'; diff --git a/navtreeindex0.js b/navtreeindex0.js index 512330ab..219a64ff 100644 --- a/navtreeindex0.js +++ b/navtreeindex0.js @@ -98,64 +98,70 @@ var NAVTREEINDEX0 = "class_a_q_n_w_b_1_1_base_data_type.html#abb1e4b6b662308e48b6b4a7ad989d157":[3,0,0,2,1], "class_a_q_n_w_b_1_1_base_i_o.html":[2,0,0,3], "class_a_q_n_w_b_1_1_base_i_o.html":[3,0,0,3], -"class_a_q_n_w_b_1_1_base_i_o.html#a0f5c5684c8427842a10c15d159a30abd":[2,0,0,3,27], 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