add HCP pipelines

[stebo85]

https://github.com/Washington-University/HCPpipelines

[lucsanara]

Hi!! was this already implemented?

[stebo85]

Yes, we have a bidsapp for these pipelines: bidsapphcppipelines_4.3.0

[lucsanara]

I am trying to work with hcpasl pipeline but do not succeed. Should it be also installed? https://github.com/physimals/hcp-asl

[stebo85]

Dear @lucsanara - the hcp-asl pipeline is not yet available in Neurodesk, but I opened an issue for it now: #765 . Do you want to try to contribute this pipeline to Neurodesk?

[lucsanara]

Sure! Not sure how it works to install it. I ran:
conda create -n hcpasl python=3.11 cython 'numpy>=1.25'
conda activate hcpasl
pip install git+https://github.com/physimals/hcp-asl.git
It did not work when entering the command process_hcp_asl

[stebo85]

@lucsanara - it needs a few more things to make this work. We can try to have a look at this in the next weeks - would that work for you or do you need it urgently?