From a9197db5df10ad88726711459161be49307048bb Mon Sep 17 00:00:00 2001
From: Neurodesk Github Action Runner <mail.neurodesk@gmail.com>
Date: Wed, 30 Oct 2024 01:35:58 +0000
Subject: [PATCH] add mrtrix path

---
 recipes/micapipe/build.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/recipes/micapipe/build.sh b/recipes/micapipe/build.sh
index 1b96b41b..2b0a1ccb 100755
--- a/recipes/micapipe/build.sh
+++ b/recipes/micapipe/build.sh
@@ -16,7 +16,7 @@ neurodocker generate ${neurodocker_buildMode} \
    --run="mkdir -p ${mountPointList}" \
    --workdir /opt \
    --install wget git curl ca-certificates unzip \
-   --env PATH='$PATH':/opt/${toolName}/ \
+   --env PATH='$PATH':/opt/${toolName}/:/opt/miniconda-22.11.1/envs/micapipe/bin/ \
    --env DEPLOY_PATH=/opt/${toolName}/ \
    --copy README.md /README.md \
    --copy test.sh /test.sh \