diff --git a/recipes/mrtrix3/build.sh b/recipes/mrtrix3/build.sh index 46b6d29d..435ba8b9 100644 --- a/recipes/mrtrix3/build.sh +++ b/recipes/mrtrix3/build.sh @@ -27,11 +27,6 @@ neurodocker generate ${neurodocker_buildMode} \ --run="wget https://object-store.rc.nectar.org.au/v1/AUTH_dead991e1fa847e3afcca2d3a7041f5d/build/acpcdetect_V2.1_LinuxCentOS6.7.tar.gz \ && tar zxvf acpcdetect_V2.1_LinuxCentOS6.7.tar.gz \ && rm -rf acpcdetect_V2.1_LinuxCentOS6.7.tar.gz" \ - --workdir /opt/workshop-data \ - --run "pip install osfclient" \ - --run "osf -p qg9jw clone . \ - && cat DICOM_dwifslpreproc-*.tar | tar -xi \ - && rm -f DICOM_dwifslpreproc-*.tar" \ --env ARTHOME=/opt/acpcdetect_V2.1/ \ --env PATH='$PATH':/opt/acpcdetect_V2.1/bin \ --env DEPLOY_PATH=/opt/${toolName}-${toolVersion}/bin/:/opt/acpcdetect_V2.1/bin \