From 487747ca18ddbe55d4bd2fdda51cf8fc7f6fe9bb Mon Sep 17 00:00:00 2001
From: Steffen Bollmann <s.bollmann@uq.edu.au>
Date: Wed, 14 Feb 2024 03:37:46 +0000
Subject: [PATCH] fix SPM environment call for nipype in jupyterlab SKIPCI

---
 recipes/spm12/build.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/recipes/spm12/build.sh b/recipes/spm12/build.sh
index ad64e30e..4ee2573b 100644
--- a/recipes/spm12/build.sh
+++ b/recipes/spm12/build.sh
@@ -47,7 +47,7 @@ neurodocker generate ${neurodocker_buildMode} \
    --env DEPLOY_BINS=run_spm12.sh:spm12 \
    --env PATH='$PATH':/opt/spm12:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin \
    --env DEPLOY_ENV_FORCE_SPMMCR="1" \
-   --env DEPLOY_ENV_SPMMCRCMD="BASEPATH/opt/spm12/run_spm12.sh BASEPATH/opt/mcr/v97/ script" \
+   --env DEPLOY_ENV_SPMMCRCMD="run_spm12.sh /opt/mcr/${MCR_VERSION}/ script" \
    --copy README.md /README.md \
   > ${toolName}_${toolVersion}.${neurodocker_buildExt}