diff --git a/recipes/deepretinotopy/build.sh b/recipes/deepretinotopy/build.sh index 19ed3f58..77e53ce8 100644 --- a/recipes/deepretinotopy/build.sh +++ b/recipes/deepretinotopy/build.sh @@ -14,11 +14,8 @@ fi source ../main_setup.sh neurodocker generate ${neurodocker_buildMode} \ - --base-image ubuntu:18.04 \ - --pkg-manager apt \ - --run="printf '#!/bin/bash\nls -la' > /usr/bin/ll" \ - --run="chmod +x /usr/bin/ll" \ - --run="mkdir -p ${mountPointList}" \ + --base-image ghcr.io/neurodesk/freesurfer_7.3.2:20230216 \ + --pkg-manager yum \ --install git \ --miniconda version=py37_4.8.3 \ conda_install='pytorch=1.6.0 torchvision=0.7.0 cudatoolkit=10.2 -c pytorch' \ @@ -28,9 +25,6 @@ neurodocker generate ${neurodocker_buildMode} \ --run='pip install --no-index torch-cluster -f https://pytorch-geometric.com/whl/torch-1.6.0+cu102.html' \ --run='pip install --no-index torch-spline-conv -f https://pytorch-geometric.com/whl/torch-1.6.0+cu102.html' \ --run='git clone https://github.com/felenitaribeiro/nilearn.git' \ - --install git wget connectome-workbench \ - --freesurfer version=7.1.1 \ - --copy license.txt /opt/freesurfer-7.1.1/license.txt \ --env DEPLOY_BINS=wb_view:wb_command:wb_shortcuts \ --copy README.md /README.md \ > ${toolName}_${toolVersion}.Dockerfile