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Chenyang's Notes

TanchyKing edited this page Nov 16, 2020 · 7 revisions

This is Chenyang's notes for issue #120.


inference with tutorial image:

inf_tutor

inference with validation image:

inf_val

inference with test image:

inf_test


2D (xy-axis) version of groundtruth (z 0~249):

z=10

z=10

z=125

z=125

z=240

z=240

2D (xy-axis) version of inference results (z 0~249):

z=10

z=10

z=125

z=125

z=240

z=240

2D (xy-axis) version of provided results (z 0~249):

z=10

z=10

z=125

z=125

z=240

z=240


(i) Training data: size 520*520*520 (with groundtruth)

(ii) Testing data: size 250*250*250

training2_napari

The settings of Flood-filling Networks:

setting

The model:

model

The inference result:

inference

(i) The single segmentation, starting from the specified origin point (zy-axis, yx-axis, xz-axis):

single_segment

(ii) The segmentation from default function:

seg_napari

(iii) The segmentation from seg-0_0_0.npz:

output_napari