diff --git a/easypqp/convert.py b/easypqp/convert.py index ec821d8..fd5bf87 100755 --- a/easypqp/convert.py +++ b/easypqp/convert.py @@ -1,5 +1,6 @@ import itertools import pathlib +import pdb import time from .util import timestamped_echo import numpy as np @@ -600,7 +601,7 @@ def parse_unimod(self): root = tree.getroot() ptms = {} - sites = ['A','R','N','D','C','E','Q','G','H','O','I','L','K','M','F','P','U','S','T','W','Y','V','N-term','C-term'] + sites = ['A','R','N','D','C','E','Q','G','H','O','I','L','K','M','F','P','U','S','T','W','Y','V','N-term','C-term', 'B', 'J', 'X', 'Z'] positions = ['Anywhere','Any N-term','Any C-term','Protein N-term','Protein C-term'] for site in sites: