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nextflow.config
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nextflow.config
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/*
vim: syntax=groovy
-*- mode: groovy;-*-
* -------------------------------------------------
* Nextflow config file
* -------------------------------------------------
* Default config options for all environments.
* Cluster-specific config options should be saved
* in the config folder and imported under a profile
* name here.
*/
manifest {
homePage = 'https://github.com/NationalGenomicsInfrastructure/aliceflow'
description = 'GATK-BP and Genalice WGS workflow from SciLifeLab'
}
params {
help = ''
version = ''
verbose = ''
project = ''
steps = 'preprocessing'
}
profiles {
standard {
includeConfig 'configuration/standard.config'
includeConfig 'configuration/milou.config'
}
interactive {
includeConfig 'configuration/standard.config'
includeConfig 'configuration/interactive-milou.config'
}
}