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CHANGELOG.md

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MultiQC_NGI

v0.6 - 2018-08-29

  • Added no-javascript warning and loading warning
  • Allowed intro text and report_header_info in report if specified.
  • Removed custom modules for NGI-RNAseq pipeline
    • This output is now parsed using Custom Content by native MultiQC

v0.5 - 2017-05-18

  • More updates to match syntax changes in core MultiQC v1.0
    • Moved default config values into the core code
    • Updated syntax, imports and other things
  • Made the featureCounts_biotype module sum any key that includes rRNA
  • Added Swedac logo and NGI accreditation blurb at bottom of ngi template.

v0.4 - 2017-03-28

  • Updated code to work with new import styles in MultiQC v1.0dev
  • Whitespace cleanup
  • Fetch Reference Genome from statusdb
    • Print at the top of the report
    • Show just underneath the FastQ Screen plot

v0.3.1 - 2016-11-25

  • Stopped DupRadar section from displaying even when there were no DupRadar reports
  • Gave featureCounts biotype a unique ID so that nav links work
  • Made featureCounts biotype have consistent key order in plot
  • New script to run DupRadar with appropriate output files for MultiQC_NGI

v0.3 - 2016-09-27

  • New dupRadar module
    • Takes output from dupRadar script in the NGI-RNAseq pipeline
  • New featureCounts biotype plot / rRNA in General Stats table
    • Takes output from the NGI-RNAseq pipeline where featureCounts sums the counts for each biotype and plots this
  • Reports now handle multiple projects
    • No header is added to the top of the report, but other fuctions (eg. sample name swapping) now works
  • Added functionality to copy reports to an external server via scp on report completion
  • New General Stats table column - NGI name
  • New command line flag --disable-ngi

v0.2.2 - 2016-07-08

  • Another bugfix release to handle even more missing information in statusdb

v0.2.1 - 2016-07-06

  • Minor bugfix release to handle missing information in statusdb

v0.2 - 2016-07-05

  • Ability to test using a static JSON file instead of statusdb
  • Compatability with new MultiQC features (eg. ENV vars)
  • WGS-specific cleaning of reports (remove FastQC and FastQ Screen from general stats table)
  • Got the RNA-seq MDS plot to work
  • Made code more tolerant of missing statusdb values
  • Lots of minor bug fixes

v0.1 - 2016-05-17

Initial release.

  • Module for NextFlow RNA-Seq BP pipeline
    • Heatmap of sample correlations
    • MDS plot
  • Automatically find Project ID from report, or specify with --project
  • Pull project and sample metadata from StatusDB
    • NGI template shows project metadata at head of report, plus NGI logo
    • General Stats columns added for RIN, Library Concentration and Library Amount Taken
  • Push MultiQC report data to StatusDB
    • config.push_statusdb or --push/--no-push
  • Ability to disable StatusDB interactions with config.disable_ngi
  • genstat barebones template started, but not complete.