Sample datasets for testing usage with the NGS580 target exome NGS analysis pipeline. Generated on Illumina NextSeq platform.
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HapMap: synthetic 'normal' human DNA, representing typical background SNP's -
SeraCare: synthetic human DNA with mutations for simulating 'tumor' samples -
NTC-H2O: No Template Control; water sample
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tiny: reads subset for 6 target regions -
small: reads subset to include one target region per chromosome -
full: (download required; see below) full sets of demultiplexed reads for all samples
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targets.bed: sequencing target regions -
samples...[tsv|csv]: samplesheets describing samples and groupings, for use with pipeline testing -
*.fastq.gz: sequencing reads
Full dataset is too large to host on GitHub (14GB). To download it, run the following command:
make full