Makefile

.PHONY: default test docs pre-commit venv-dev venv-program

default: docs

pre-commit: venv-program venv-dev test .lint

db.sqlite:
	sqlite3 $@ < schema.sql
templates.tsv: db.sqlite
	sqlite3 $< < make_template_by_count.sql
	sqlite3 -header -separator $$'\t' $< \
		'select * from template_by_count c join acq_param p on c.param_id=p.rowid' > $@

# how to get into the python virtual environment
source_venv := . .venv/bin/activate

## documentation. github action pushes this to 'gh-pages' branch
docs: docs/
docs/: $(wildcard *.py) sphinx/conf.py $(wildcard sphinx/*.rst) docs/taglist.csv docs/_static/mrqart/index.html| venv-dev venv-program
	$(source_venv) && sphinx-build sphinx/ docs/
# sphinx can read in csv but not tsv, so convert for it
docs/taglist.csv: taglist.txt
	mkdir -p docs
	sed '/^#/d;s/,//g;s/\t/,/g' $< > $@

# copy mrqart but adjust for different directory and debugging
docs/_static/mrqart/index.html: static/index.html | docs/_static/mrqart/main.css
	sed 's/body>/body onload="show_debug()">/; s:static/main.css:main.css:' $^ > $@

docs/_static/mrqart/main.css: static/main.css
	mkdir -p $(dir $@)
	cp $^ $@

##

.lint: $(wildcard *.py) $(wildcard sphinx/*.rst) | venv-dev
	$(source_venv) && black . > .lint && isort --skip-gitignore . >> .lint && codespell -w >> .lint

test: .test.doctest .test.pytest
.test.doctest: change_header.py acq2sqlite.py dcmmeta2tsv.py | venv-program venv-dev  #$(wildcard *py)
	$(source_venv) && LOGLEVEL=CRITICAL python3 -m doctest $^ 2>&1 | tee $@
.test.pytest: $(wildcard tests/*py) $(wildcard *py) | venv-program venv-dev  #$(wildcard *py)
	$(source_venv) && python3 -m pytest tests/ 2>&1 | tee $@

## managing the environment
# dev requirements separate to hopefully run github actions a bit faster
.venv/:
	python3 -m venv .venv
venv-dev: .venv/bin/black
.venv/bin/black: .venv/
	$(source_venv) && pip install -r requirements_dev.txt
venv-program: .venv/bin/pydicom
.venv/bin/pydicom: .venv/
	$(source_venv) && pip install -r requirements.txt

## example key gen usage
creds/email.key:
	age-keygen -o $@
creds/email.age: creds/email.key
	printf user\tpass | age -e -i email.key > email.age