Address compiler and valgrind/sanitizer warnings #38
Workflow file for this run
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| # Test ngen-topmodel integration | |
| name: Ngen Integration Tests | |
| # Controls when the action will run. | |
| on: | |
| push: | |
| branches: [ master, dev, notreal ] | |
| pull_request: | |
| branches: [ master, dev, notreal ] | |
| workflow_dispatch: | |
| env: | |
| # Obtained from https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources | |
| # TODO: add something later that can check the runners for hyperthreading | |
| LINUX_NUM_PROC_CORES: 2 | |
| MACOS_NUM_PROC_CORES: 3 | |
| ASAN_OPTIONS: detect_leaks=false | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # Run general unit tests in linux environment | |
| test_topmodelbmi: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checkout and save the topmodel to a temporary directory | |
| - name: Checkout the commit | |
| uses: actions/checkout@v4 | |
| - name: Save Topmodel to a Temp Directory | |
| run: | | |
| # Move files to a temporary directory | |
| mkdir ${{runner.temp}}/topmodel | |
| mv ./* ${{runner.temp}}/topmodel | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: checkout actions in another repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: noaa-owp/ngen | |
| - name: Build Surfacebmi | |
| id: submod_build_1 | |
| uses: ./.github/actions/ngen-submod-build | |
| with: | |
| mod-dir: " extern/noah-owp-modular/" | |
| targets: "surfacebmi" | |
| cmake-flags: "-DNGEN_IS_MAIN_PROJECT:BOOL=ON" | |
| - name: Build ISO C Fortran BMI | |
| id: submod_build_2 | |
| uses: ./.github/actions/ngen-submod-build | |
| with: | |
| mod-dir: "extern/iso_c_fortran_bmi/" | |
| - name: Build PET | |
| id: submod_build_5 | |
| uses: ./.github/actions/ngen-submod-build | |
| with: | |
| mod-dir: "extern/evapotranspiration/evapotranspiration" | |
| targets: "petbmi" | |
| - name: Build SLoTH | |
| id: submod_build_6 | |
| uses: ./.github/actions/ngen-submod-build | |
| with: | |
| mod-dir: "extern/sloth/" | |
| targets: "slothmodel" | |
| # Build Ngen and save some files | |
| - name: Build Ngen | |
| id: ngen_id1 | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "ngen" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| #is this required for this test? | |
| bmi_c: 'ON' | |
| bmi_fortran: 'ON' | |
| timeout-minutes: 15 | |
| - name: Prepare to Build Topmodel Library for Ngen | |
| run: | | |
| # Move files to appropriate directory to build topmodel library | |
| rm -rf extern/topmodel/topmodel/* | |
| mv ${{runner.temp}}/topmodel/* extern/topmodel/topmodel | |
| - name: Build Topmodel | |
| id: submod_build_4 | |
| uses: ./.github/actions/ngen-submod-build | |
| with: | |
| mod-dir: " extern/topmodel/" | |
| targets: "topmodelbmi" | |
| initialize: "false" | |
| cmake-flags: "CFLAGS='-g -fsanitize=address -Werror'" | |
| - name: Run petbmi, topmodelbmi | |
| run: | | |
| # Run ngen with topmodel & pet | |
| mv ${{ steps.ngen_id1.outputs.build-dir }} ./ngen-build/ | |
| cp extern/topmodel/topmodel/data/*.dat data | |
| inputfile='extern/topmodel/topmodel/data/realization_config_topmodel_pet_ngen.json' | |
| ./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile | |
| - name: Run surfacebmi, topmodelbmi | |
| run: | | |
| # Run ngen with noahowpmod & topmodel | |
| inputfile='extern/topmodel/topmodel/data/realization_config_topmodel_ngenCI.json' | |
| ./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile |