fix: seek to beginning of config file after looking for verbose key #95
Workflow file for this run
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| # Test ngen-lgar-c integration | |
| name: Ngen Integration Tests | |
| # Controls when the action will run. | |
| on: | |
| push: | |
| branches: [ master, dev, notreal ] | |
| pull_request: | |
| branches: [ master, dev, notreal ] | |
| workflow_dispatch: | |
| env: | |
| # Obtained from https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources | |
| # TODO: add something later that can check the runners for hyperthreading | |
| LINUX_NUM_PROC_CORES: 2 | |
| MACOS_NUM_PROC_CORES: 3 | |
| ASAN_OPTIONS: detect_leaks=false | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # Run general unit tests in linux environment | |
| test_lgar-c: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checkout and build the LGAR-C | |
| - name: Checkout the commit | |
| uses: actions/checkout@v4 | |
| - name: Build the LGAR-C Library | |
| run: | | |
| cmake -B cmake_build -S . -DNGEN=ON | |
| make -C cmake_build | |
| - name: Save LGAR-C to a Temp Directory | |
| run: | | |
| # Move files to a temporary directory | |
| mkdir ${{runner.temp}}/lgar | |
| mv ./* ${{runner.temp}}/lgar | |
| # Checkout and build the SoilMoistureProfiles | |
| - name: Checkout the commit | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: noaa-owp/soilmoistureprofiles | |
| - name: Build the SMP Library | |
| run: | | |
| cmake -B cmake_build -S . -DNGEN=ON | |
| make -C cmake_build | |
| - name: Save SoilMoistureProfile to a Temp Directory | |
| run: | | |
| # Move files to a temporary directory | |
| mkdir ${{runner.temp}}/smp | |
| mv ./* ${{runner.temp}}/smp | |
| # Checkout and build SoilFreezeThaw | |
| - name: checkout actions in another repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: noaa-owp/soilfreezethaw | |
| - name: Build the SFT Library | |
| run: | | |
| cmake -B cmake_build -S . -DNGEN=ON | |
| make -C cmake_build | |
| - name: Save SoilFreezeThaw to a Temp Directory | |
| run: | | |
| # Move files to a temporary directory | |
| mkdir ${{runner.temp}}/sft | |
| mv ./* ${{runner.temp}}/sft | |
| # Checkout ngen | |
| - name: checkout actions in another repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: noaa-owp/ngen | |
| - name: Build SLoTH | |
| id: submod_build_6 | |
| uses: ./.github/actions/ngen-submod-build | |
| with: | |
| mod-dir: "extern/sloth/" | |
| targets: "slothmodel" | |
| # Build Ngen and save some files | |
| - name: Build Ngen | |
| id: ngen_id1 | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "ngen" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| #is this required for this test? | |
| bmi_c: 'ON' | |
| timeout-minutes: 15 | |
| - name: Move LGAR-C File Including cmake_build to Appropriate Directory | |
| run: | | |
| if [ -d "./extern/LGAR-C/" ]; then | |
| rm -rf extern/LGAR-C | |
| fi | |
| mkdir -p extern/LGAR-C/LGAR-C | |
| mv ${{runner.temp}}/lgar/* extern/LGAR-C/LGAR-C | |
| - name: Move SFT Files Including cmake_build to Appropriate Directory | |
| run: | | |
| rm -rf extern/SoilFreezeThaw/SoilFreezeThaw/* | |
| mv ${{runner.temp}}/sft/* extern/SoilFreezeThaw/SoilFreezeThaw | |
| - name: Move SMP Files Including cmake_build to Appropriate Directory | |
| run: | | |
| rm -rf extern/SoilMoistureProfiles/SoilMoistureProfiles/* | |
| mv ${{runner.temp}}/smp/* extern/SoilMoistureProfiles/SoilMoistureProfiles | |
| # Run ngen with sft, smp, and lasam | |
| - name: Run Ngen Test with LASAM | |
| run: | | |
| mv ${{ steps.ngen_id1.outputs.build-dir }} ./ngen-build/ | |
| cp extern/LGAR-C/LGAR-C/data/vG_default_params.dat data/ | |
| inputfile='extern/LGAR-C/LGAR-C/realizations/realization_config_lasam.json' | |
| ./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile | |
| - name: Run Ngen Test with SFT and SMP | |
| run: | | |
| inputfile='extern/LGAR-C/LGAR-C/realizations/realization_config_lasam_sft.json' | |
| ./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile | |
| - name: Run Ngen Test with SMP | |
| run: | | |
| inputfile='extern/LGAR-C/LGAR-C/realizations/realization_config_lasam_smp.json' | |
| ./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile |