Inline post Updates #535
Workflow file for this run
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# This is a CI workflow for the fv3atm project. | |
# | |
# This workflow builds and tests the fv3atm library using GCC, and it tests | |
# different CMake build options. | |
# | |
# Alex Richert, 6 Dec 2023 | |
name: GCC | |
on: | |
push: | |
branches: | |
- develop | |
pull_request: | |
branches: | |
- develop | |
jobs: | |
build_spack: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
gcc_ver: ["12"] | |
mpi: ["mpich", "openmpi"] | |
steps: | |
- name: checkout-fv3atm | |
uses: actions/checkout@v4 | |
with: | |
path: ${{ github.workspace }}/fv3atm | |
submodules: recursive | |
- name: install-cmake | |
run: | | |
cd ${{ github.workspace }} | |
curl -f -s -S -R -L https://github.com/Kitware/CMake/releases/download/v3.29.2/cmake-3.29.2-Linux-x86_64.tar.gz | tar -zx | |
echo "${{ github.workspace }}/cmake-3.29.2-linux-x86_64/bin" >> $GITHUB_PATH | |
- name: cache-spack | |
id: cache-spack | |
uses: actions/cache@v4 | |
with: | |
path: ${{ github.workspace }}/spack-develop | |
key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }} | |
# Building dependencies takes 40+ min | |
- name: spack-install | |
if: steps.cache-spack.outputs.cache-hit != 'true' | |
run: | | |
wget --no-verbose https://github.com/spack/spack/archive/refs/heads/develop.zip | |
unzip develop.zip -d ${GITHUB_WORKSPACE}/ &> unzip.out | |
. ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
spack env create gcc${{ matrix.gcc_ver }} ${GITHUB_WORKSPACE}/fv3atm/ci/spack.yaml | |
spack env activate gcc${{ matrix.gcc_ver }} | |
spack compiler find | grep gcc@${{ matrix.gcc_ver }} | |
spack external find gmake cmake git git-lfs perl python ${{ matrix.mpi }} | |
spack config add "packages:all:require:['%gcc@${{ matrix.gcc_ver }}']" | |
spack config add "packages:mpi:require:'${{ matrix.mpi }}'" | |
spack concretize |& tee ${SPACK_ENV}/log.concretize | |
spack install -j2 --fail-fast | |
echo "spackrc=$?" >> ${GITHUB_ENV} | |
spack clean --all | |
build_fv3atm: | |
needs: build_spack | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
cmake_opts: ["-D32BIT=ON", "-D32BIT=OFF"] | |
gcc_ver: ["12"] | |
mpi: ["mpich", "openmpi"] | |
steps: | |
# Only do Doxygen and gcovr build for one job | |
- name: decide-doc-gcovr-build | |
run: | | |
if [[ "${{ matrix.cmake_opts }}" == "-D32BIT=ON" && "${{ matrix.gcc_ver }}" == 12 && "${{ matrix.mpi }}" == mpich ]]; then | |
echo 'devbuild=ON' | tee -a ${GITHUB_ENV} | |
echo 'gcov_cmake="-DCMAKE_Fortran_FLAGS=-fprofile-abs-path -fprofile-arcs -ftest-coverage -O0"' | tee -a ${GITHUB_ENV} | |
else | |
echo 'devbuild=OFF' | tee -a ${GITHUB_ENV} | |
fi | |
- name: install-utilities | |
run: | | |
sudo apt-get install doxygen graphviz | |
python3 -m pip install gcovr | |
- name: install-cmake | |
run: | | |
cd ${{ github.workspace }} | |
curl -f -s -S -R -L https://github.com/Kitware/CMake/releases/download/v3.29.2/cmake-3.29.2-Linux-x86_64.tar.gz | tar -zx | |
echo "${{ github.workspace }}/cmake-3.29.2-linux-x86_64/bin" >> $GITHUB_PATH | |
- name: checkout-fv3atm | |
uses: actions/checkout@v4 | |
with: | |
path: ${{ github.workspace }}/fv3atm | |
submodules: recursive | |
- name: cache-spack | |
id: cache-spack | |
uses: actions/cache/restore@v4 | |
with: | |
path: ${{ github.workspace }}/spack-develop | |
key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }} | |
- name: build-fv3atm | |
run: | | |
. ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
spack env activate gcc${{ matrix.gcc_ver }} | |
spack load $(spack find --format "{name}") | |
cd ${GITHUB_WORKSPACE}/fv3atm | |
git clone https://github.com/NOAA-EMC/CMakeModules | |
git clone --recurse-submodules https://github.com/NOAA-PSL/stochastic_physics stochastic_physics_repo | |
mkdir ${GITHUB_WORKSPACE}/build | |
cd ${GITHUB_WORKSPACE}/build | |
export CC=mpicc | |
export CXX=mpicxx | |
export FC=mpif90 | |
cmake ${GITHUB_WORKSPACE}/fv3atm -DBUILD_TESTING=ON ${{ matrix.cmake_opts }} -DENABLE_DOCS=ON ${{ env.gcov_cmake }} | |
make -j2 | |
- name: run-tests | |
run: | | |
cd $GITHUB_WORKSPACE/build | |
ctest -j2 --output-on-failure --rerun-failed | |
- name: get-test-coverage | |
if: ${{ env.devbuild == 'ON' }} | |
run: | | |
cd $GITHUB_WORKSPACE/build | |
gcovr -r .. -v --html-details --gcov-executable gcov-12 --exclude $GITHUB_WORKSPACE/fv3atm/tests --exclude $GITHUB_WORKSPACE/fv3atm/stochastic_physics_repo --exclude $GITHUB_WORKSPACE/fv3atm/build/ccpp --exclude $GITHUB_WORKSPACE/fv3atm/ccpp/physics --exclude $GITHUB_WORKSPACE/fv3atm/ccpp/framework --exclude $GITHUB_WORKSPACE/fv3atm/atmos_cubed_sphere --exclude CMakeFiles --print-summary -o test-coverage.html | |
- name: upload-test-coverage | |
uses: actions/upload-artifact@v4 | |
if: ${{ env.devbuild == 'ON' }} | |
with: | |
name: test-coverage-fv3atm-${{ github.sha }} | |
path: | | |
${{ github.workspace }}/build/*.html | |
${{ github.workspace }}/build/*.css | |
- name: upload-docs | |
uses: actions/upload-artifact@v4 | |
if: ${{ env.devbuild == 'ON' }} | |
with: | |
name: docs-fv3atm | |
path: | | |
build/docs/html | |
- name: debug-artifacts | |
uses: actions/upload-artifact@v4 | |
if: ${{ failure() }} | |
with: | |
name: ccpp_prebuild_logs-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }}-${{ matrix.cmake_opts }} | |
path: ${{ github.workspace }}/build/ccpp/ccpp_prebuild.* |