Regarding running WWIII using qsub command

[krishnanathira]

Hi

I tried running the model this way
my submit.sh file is as follows,

#! /bin/bash
#PBS -l nodes=1:ppn=16
#PBS -N WW3-Run
#PBS -q default
#PBS -j oe
#PBS -V
cd /home/athirak/WW3-6.07.1/regtests 
cat $PBS_NODEFILE > pbsnodes
./bin/run_test -N -n 16 -p mpirun -s Ifremer1 -w output_test ../model A_test

"output_test" is my output folder and A_test is my work directory. I have kept all the inputs in one folder called "input" inside the A_test folder.
When I am running the model with qsub submit.sh, its terminating soon.
But, instead of using qsub, when I tried running the command ./bin/run_test -N -n 16 -p mpirun -s Ifremer1 -w output_test ../model A_test
in terminal, the model is running.

Can you please help me to solve this issue?
Many Thanks
Athira

[JessicaMeixner-NOAA]

Each HPC system is different and it's not possible for us to debug things here and I'd encourage you to reach out to your HPC help desk. This does not appear to be a WW3 issue.

[krishnanathira]

Thank You!

[ukmo-ccbunney]

Hi

I tried running the model this way my submit.sh file is as follows,

#! /bin/bash
#PBS -l nodes=1:ppn=16
#PBS -N WW3-Run
#PBS -q default
#PBS -j oe
#PBS -V
cd /home/athirak/WW3-6.07.1/regtests 
cat $PBS_NODEFILE > pbsnodes
./bin/run_test -N -n 16 -p mpirun -s Ifremer1 -w output_test ../model A_test

"output_test" is my output folder and A_test is my work directory. I have kept all the inputs in one folder called "input" inside the A_test folder. When I am running the model with qsub submit.sh, its terminating soon. But, instead of using qsub, when I tried running the command ./bin/run_test -N -n 16 -p mpirun -s Ifremer1 -w output_test ../model A_test in terminal, the model is running.

Can you please help me to solve this issue? Many Thanks Athira

Sounds like a resource issue? Maybe you need to request more memory for the test? Our PBS has quite a low memory default. Try #PBS -l mem=2GB or something similar (I don't know how much memory your model uses).

[krishnanathira]

Thanks. I will try that.

[krishnanathira]

It was a resource issue. Thanks for the help.