diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml index f45f795..8635290 100644 --- a/.github/workflows/lint.yaml +++ b/.github/workflows/lint.yaml @@ -29,4 +29,5 @@ jobs: run: lintr::lint_package() shell: Rscript {0} env: + FILTER_REGEX_EXCLUDE: vignettes/workflow.Rmd LINTR_ERROR_ON_LINT: true \ No newline at end of file diff --git a/vignettes/workflow.Rmd b/vignettes/workflow.Rmd index 0f2354e..d232f39 100644 --- a/vignettes/workflow.Rmd +++ b/vignettes/workflow.Rmd @@ -58,20 +58,28 @@ temp_process <- process_covariates( path = "./inst/extdata/air.2m" ) ``` -```{r, echo = FALSE} -temp_process <- process_covariates( - covariate = "narr", - variable = "air.2m", - date = c("2021-12-28", "2022-01-03"), - path = system.file("extdata", "air.2m", package = "amadeus") -) -``` Check the `SpatVector` object. -```{r} +```{r, eval = FALSE} temp_process ``` +```{r, echo = FALSE} +cat( +"class : SpatRaster +dimensions : 277, 349, 7 (nrow, ncol, nlyr) +resolution : 32462.99, 32463 (x, y) +extent : -16231.49, 11313351, -16231.5, 8976020 (xmin, xmax, ymin, ymax) +coord. ref. : +proj=lcc +lat_0=50 +lon_0=-107 +lat_1=50 +lat_2=50 +x_0=5632642.22547 +y_0=4612545.65137 +datum=WGS84 +units=m +no_defs +sources : air.2m.2021.nc:air (4 layers) + air.2m.2022.nc:air (3 layers) +varnames : air (Daily Air Temperature at 2 m) + air (Daily Air Temperature at 2 m) +names : air.2~11228, air.2~11229, air.2~11230, air.2~11231, air.2~20101, air.2~20102, ... +unit : K, K, K, K, K, K, ... +time : 2021-12-28 to 2022-01-03 UTC\n" +) +``` ## Calculate covariates @@ -79,7 +87,7 @@ Calculate covariates for North Carolina county boundaries with `calc_covariates` County boundaries are accessed with the `tigris::counties` function.\insertRef{package_tigris} `geom = TRUE` will return the covariates as a `SpatVector` object. -```{r} +```{r, eval = FALSE} library(tigris) temp_covar <- calc_covariates( covariate = "narr", @@ -91,6 +99,19 @@ temp_covar <- calc_covariates( ) ``` -```{r} +```{r, eval = FALSE} temp_covar ``` +```{r, echo = FALSE} +cat( +"class : SpatVector +geometry : polygons +dimensions : 700, 3 (geometries, attributes) +extent : 7731783, 8506154, 3248490, 3694532 (xmin, xmax, ymin, ymax) +coord. ref. : +proj=lcc +lat_0=50 +lon_0=-107 +lat_1=50 +lat_2=50 +x_0=5632642.22547 +y_0=4612545.65137 +datum=WGS84 +units=m +no_defs +names : NAME time air.2m_0 +type : +values : Chatham 2021-12-28 289.3 + Alamance 2021-12-28 288.8 + Davidson 2021-12-28 289.1\n") +``` \ No newline at end of file