disable live vignette run

NIEHS · Jul 30, 2024 · 7a0371d · 7a0371d
1 parent 49beb8f
commit 7a0371d
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Showing 2 changed files with 33 additions and 11 deletions.
diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml
@@ -29,4 +29,5 @@ jobs:
         run: lintr::lint_package()
         shell: Rscript {0}
         env:
+          FILTER_REGEX_EXCLUDE: vignettes/workflow.Rmd
           LINTR_ERROR_ON_LINT: true
diff --git a/vignettes/workflow.Rmd b/vignettes/workflow.Rmd
@@ -58,28 +58,36 @@ temp_process <- process_covariates(
   path = "./inst/extdata/air.2m"
 )
 ```
-```{r, echo = FALSE}
-temp_process <- process_covariates(
-  covariate = "narr",
-  variable = "air.2m",
-  date = c("2021-12-28", "2022-01-03"),
-  path = system.file("extdata", "air.2m", package = "amadeus")
-)
-```
 
 Check the `SpatVector` object.
 
-```{r}
+```{r, eval = FALSE}
 temp_process
 ```
+```{r, echo = FALSE}
+cat(
+"class       : SpatRaster 
+dimensions  : 277, 349, 7  (nrow, ncol, nlyr)
+resolution  : 32462.99, 32463  (x, y)
+extent      : -16231.49, 11313351, -16231.5, 8976020  (xmin, xmax, ymin, ymax)
+coord. ref. : +proj=lcc +lat_0=50 +lon_0=-107 +lat_1=50 +lat_2=50 +x_0=5632642.22547 +y_0=4612545.65137 +datum=WGS84 +units=m +no_defs 
+sources     : air.2m.2021.nc:air  (4 layers) 
+              air.2m.2022.nc:air  (3 layers) 
+varnames    : air (Daily Air Temperature at 2 m) 
+              air (Daily Air Temperature at 2 m) 
+names       : air.2~11228, air.2~11229, air.2~11230, air.2~11231, air.2~20101, air.2~20102, ... 
+unit        :           K,           K,           K,           K,           K,           K, ... 
+time        : 2021-12-28 to 2022-01-03 UTC\n"
+)
+```
 
 ## Calculate covariates
 
 Calculate covariates for North Carolina county boundaries with `calc_covariates`.
 County boundaries are accessed with the `tigris::counties` function.\insertRef{package_tigris}
 `geom = TRUE` will return the covariates as a `SpatVector` object.
 
-```{r}
+```{r, eval = FALSE}
 library(tigris)
 temp_covar <- calc_covariates(
   covariate = "narr",
@@ -91,6 +99,19 @@ temp_covar <- calc_covariates(
 )
 ```
 
-```{r}
+```{r, eval = FALSE}
 temp_covar
 ```
+```{r, echo = FALSE}
+cat(
+"class       : SpatVector 
+geometry    : polygons 
+dimensions  : 700, 3  (geometries, attributes)
+extent      : 7731783, 8506154, 3248490, 3694532  (xmin, xmax, ymin, ymax)
+coord. ref. : +proj=lcc +lat_0=50 +lon_0=-107 +lat_1=50 +lat_2=50 +x_0=5632642.22547 +y_0=4612545.65137 +datum=WGS84 +units=m +no_defs 
+names       :     NAME       time air.2m_0
+type        :    <chr>   <POSIXt>    <num>
+values      :   Chatham 2021-12-28    289.3
+               Alamance 2021-12-28    288.8
+               Davidson 2021-12-28    289.1\n")
+```