Merge pull request #122 from NIEHS/cran-0816 #185
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
# also derived from https://github.com/we-cli/coverage-badge-action | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
on: | |
push: | |
branches: [main, master] | |
pull_request: | |
branches: [main, master] | |
name: test-coverage-local | |
jobs: | |
test-coverage: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: | | |
any::pak | |
any::covr | |
any::rstac | |
needs: coverage | |
- name: Cache C++ and R dependencies | |
uses: actions/cache@v4 | |
with: | |
path: | | |
~/.cache/R | |
~/.local/share/R | |
key: dependencies-${{ runner.os }}-${{ hashFiles('**/DESCRIPTION') }} | |
restore-keys: | | |
dependencies-${{ runner.os }}- | |
- name: Test coverage | |
run: | | |
Rscript ${{ github.workspace }}/.github/workflows/test-coverage.R ${{ runner.temp }} ${{ github.workspace }} | |
shell: bash | |
- name: Show testthat output | |
if: always() | |
run: | | |
## -------------------------------------------------------------------- | |
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Get Values | |
id: get-values | |
shell: bash | |
run: | | |
COV=$(cat ${{ github.workspace }}/local_cov.Rout) | |
echo "Patch coverage read from local_cov.Rout: $COV" | |
echo "coverage=$COV" >> $GITHUB_OUTPUT | |
- name: Checkout gh-pages | |
uses: actions/checkout@v4 | |
with: | |
ref: gh-pages | |
- name: Patch comparison | |
id: patch-comparison | |
shell: bash | |
run: | | |
if ( ! test -f cov_current.Rout ); then | |
echo "0" >> cov_current.Rout | |
fi | |
cov_patch="${{ steps.get-values.outputs.coverage }}" | |
cov_current=$(cat cov_current.Rout) | |
echo "Current coverage: $cov_current" | |
if (( $(echo "$cov_patch >= $cov_current" | bc -l) )); then | |
echo "Patch coverage ($cov_patch) is greater than or equal to current coverage ($cov_current)." | |
echo "cov_update=$cov_patch" >> $GITHUB_OUTPUT | |
else | |
echo "Patch coverage ($cov_patch) is less than current coverage ($cov_current)." | |
exit 1 | |
fi | |
- name: Overwrite cov_current.Rout | |
if: ${{ github.event_name == 'push' }} | |
shell: bash | |
run: | | |
cov_update="${{ steps.patch-comparison.outputs.cov_update }}" | |
touch cov_current.Rout | |
echo "$cov_update" > cov_current.Rout | |
- name: Create Badges | |
shell: bash | |
run: | | |
npm i -g badgen-cli | |
export COV=${{ steps.get-values.outputs.coverage }} | |
COLOR=$(node -p '+process.env.COV >= 95 ? `green` : `yellow`') | |
mkdir -p badges | |
badgen -j coverage -s $COV% -c $COLOR > badges/coverage.svg | |
- name: Deploy Badges | |
uses: stefanzweifel/git-auto-commit-action@v4 | |
with: | |
commit_message: "Update badges [skip ci] & cov_current.Rout" | |
branch: gh-pages | |
skip_fetch: true | |
skip_checkout: true | |
# Without this, will get Error: | |
# Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under '/home/runner/work/coverage-badge-action/coverage-badge-action/action.yml'. | |
# Did you forget to run actions/checkout before running your local action? | |
- name: Checkout Back | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.ref }} |