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Merge pull request #122 from NIEHS/cran-0816 #185

Merge pull request #122 from NIEHS/cran-0816

Merge pull request #122 from NIEHS/cran-0816 #185

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# also derived from https://github.com/we-cli/coverage-badge-action
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
name: test-coverage-local
jobs:
test-coverage:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: |
any::pak
any::covr
any::rstac
needs: coverage
- name: Cache C++ and R dependencies
uses: actions/cache@v4
with:
path: |
~/.cache/R
~/.local/share/R
key: dependencies-${{ runner.os }}-${{ hashFiles('**/DESCRIPTION') }}
restore-keys: |
dependencies-${{ runner.os }}-
- name: Test coverage
run: |
Rscript ${{ github.workspace }}/.github/workflows/test-coverage.R ${{ runner.temp }} ${{ github.workspace }}
shell: bash
- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Get Values
id: get-values
shell: bash
run: |
COV=$(cat ${{ github.workspace }}/local_cov.Rout)
echo "Patch coverage read from local_cov.Rout: $COV"
echo "coverage=$COV" >> $GITHUB_OUTPUT
- name: Checkout gh-pages
uses: actions/checkout@v4
with:
ref: gh-pages
- name: Patch comparison
id: patch-comparison
shell: bash
run: |
if ( ! test -f cov_current.Rout ); then
echo "0" >> cov_current.Rout
fi
cov_patch="${{ steps.get-values.outputs.coverage }}"
cov_current=$(cat cov_current.Rout)
echo "Current coverage: $cov_current"
if (( $(echo "$cov_patch >= $cov_current" | bc -l) )); then
echo "Patch coverage ($cov_patch) is greater than or equal to current coverage ($cov_current)."
echo "cov_update=$cov_patch" >> $GITHUB_OUTPUT
else
echo "Patch coverage ($cov_patch) is less than current coverage ($cov_current)."
exit 1
fi
- name: Overwrite cov_current.Rout
if: ${{ github.event_name == 'push' }}
shell: bash
run: |
cov_update="${{ steps.patch-comparison.outputs.cov_update }}"
touch cov_current.Rout
echo "$cov_update" > cov_current.Rout
- name: Create Badges
shell: bash
run: |
npm i -g badgen-cli
export COV=${{ steps.get-values.outputs.coverage }}
COLOR=$(node -p '+process.env.COV >= 95 ? `green` : `yellow`')
mkdir -p badges
badgen -j coverage -s $COV% -c $COLOR > badges/coverage.svg
- name: Deploy Badges
uses: stefanzweifel/git-auto-commit-action@v4
with:
commit_message: "Update badges [skip ci] & cov_current.Rout"
branch: gh-pages
skip_fetch: true
skip_checkout: true
# Without this, will get Error:
# Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under '/home/runner/work/coverage-badge-action/coverage-badge-action/action.yml'.
# Did you forget to run actions/checkout before running your local action?
- name: Checkout Back
uses: actions/checkout@v4
with:
ref: ${{ github.ref }}