From efff122c31fdf1a8daf03208f3253551ab1b12f0 Mon Sep 17 00:00:00 2001 From: Colleen Xu Date: Mon, 2 Aug 2021 23:55:42 -0700 Subject: [PATCH] fix: add x-translator.infores-curie, replace source strings with infores curies also note: 3 apis don't have the hard-coded source field now: - text mining co-occurrence api - text mining targeted association api - drug response kp api also note: one api fits situation C of https://github.com/biothings/BioThings_Explorer_TRAPI/issues/208\#issuecomment-866620512: tcga mutational freq api --- DISEASES/smartapi.yaml | 7 +- EBIgene2phenotype/smartapi.yaml | 5 +- LINCS/smartapi.yml | 3 +- MGIgene2phenotype/smartapi.yaml | 18 +- biolink/openapi.yml | 29 +- dgidb/openapi.yml | 5 +- drug_response_kp/smartapi.yaml | 7 +- go_bp/smartapi.yaml | 21 +- go_mf/smartapi.yaml | 9 +- hpo/smartapi.yaml | 5 +- litvar/smartapi.yaml | 3 +- mychem.info/openapi_full.yml | 59 ++- mydisease.info/smartapi.yaml | 53 +-- mygene.info/openapi_full.yml | 73 ++-- myvariant.info/openapi_full.yml | 15 +- ols/smartapi.yaml | 3 +- opentarget/smartapi.yaml | 3 +- quickgo/smartapi.yaml | 3 +- semmed/semmed_anatomy.yaml | 75 ++-- semmed/semmed_biological_process.yaml | 135 +++--- semmed/semmed_chemical.yaml | 187 ++++----- semmed/semmed_disease.yaml | 193 ++++----- semmed/semmed_gene.yaml | 149 +++---- semmed/semmed_phenotype.yaml | 147 +++---- tcga_mut_freq/smartapi.yaml | 7 +- text_mining/cooccurrence.yaml | 578 +++++++++++++------------- text_mining/smartapi.yaml | 13 +- uberon/smartapi.yaml | 19 +- 28 files changed, 948 insertions(+), 876 deletions(-) diff --git a/DISEASES/smartapi.yaml b/DISEASES/smartapi.yaml index ba2cdd54..f07d17e5 100644 --- a/DISEASES/smartapi.yaml +++ b/DISEASES/smartapi.yaml @@ -11,6 +11,7 @@ info: title: DISEASES API version: '1.0' x-translator: + infores-curie: "infores:biothings-diseases" component: KP team: - Service Provider @@ -212,8 +213,6 @@ paths: schema: "$ref": "#/components/schemas/QueryPOSTResult" description: Query response objects with the "hits" property - x-bte-response-mapping: - "$ref": "#/components/x-bte-response-mapping/query-post" '400': content: application/json: @@ -389,7 +388,7 @@ components: parameters: fields: DISEASES.associatedWith predicate: related_to - source: DISEASES + source: "infores:diseases" requestBody: body: q: "{inputs[0]}" @@ -407,7 +406,7 @@ components: - id: SYMBOL semantic: Gene predicate: related_to - source: DISEASES + source: "infores:diseases" parameters: fields: DISEASES.doid size: '250' diff --git a/EBIgene2phenotype/smartapi.yaml b/EBIgene2phenotype/smartapi.yaml index 32286ada..fcfce970 100644 --- a/EBIgene2phenotype/smartapi.yaml +++ b/EBIgene2phenotype/smartapi.yaml @@ -11,6 +11,7 @@ info: title: EBIgene2phenotype API version: '1.0' x-translator: + infores-curie: "infores:biothings-ebi-gene2phenotype" component: KP team: - Service Provider @@ -385,7 +386,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: related_to - source: EBI + source: "infores:ebi-gene2phenotype" parameters: fields: gene2phenotype requestBody: @@ -405,7 +406,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: related_to - source: EBI + source: "infores:ebi-gene2phenotype" parameters: fields: _id size: '350' diff --git a/LINCS/smartapi.yml b/LINCS/smartapi.yml index b0cef08a..6fde105b 100644 --- a/LINCS/smartapi.yml +++ b/LINCS/smartapi.yml @@ -12,6 +12,7 @@ info: email: akoleti@med.miami.edu x-id: 'http://lincsportal.ccs.miami.edu/' x-translator: + infores-curie: "infores:lincs" component: KP team: - Service Provider @@ -367,7 +368,7 @@ components: predicate: treats response_mapping: $ref: '#/components/x-bte-response-mapping/drug-indication' - source: LINCS + source: "infores:lincs" ## ...so weird duplicate source info happens here supportBatch: false x-bte-response-mapping: drug-indication: diff --git a/MGIgene2phenotype/smartapi.yaml b/MGIgene2phenotype/smartapi.yaml index 488abdb8..81d9d1b8 100644 --- a/MGIgene2phenotype/smartapi.yaml +++ b/MGIgene2phenotype/smartapi.yaml @@ -11,6 +11,7 @@ info: title: MGIgene2phenotype API version: '1.0' x-translator: + infores-curie: "infores:biothings-mgi-g2p" component: KP team: - Service Provider @@ -351,10 +352,11 @@ components: type: array QueryResult: properties: - hits: - items: - "$ref": "#/components/schemas/Chem" - type: array + ## to remove semantic error of missing reference + # hits: + # items: + # "$ref": "#/components/schemas/Chem" + # type: array max_score: format: float type: number @@ -389,7 +391,7 @@ components: parameters: fields: mgi.associated_with_disease predicate: related_to - source: mgi_gene2phenotype + source: "infores:mgi" requestBody: body: q: "{inputs[0]}" @@ -407,7 +409,7 @@ components: - id: MP semantic: PhenotypicFeature predicate: related_to - source: mgi_gene2phenotype + source: "infores:mgi" parameters: fields: mgi.associated_with_phenotype requestBody: @@ -430,7 +432,7 @@ components: fields: _id size: '300' predicate: related_to - source: mgi_gene2phenotype + source: "infores:mgi" requestBody: body: q: "{inputs[0]}" @@ -448,7 +450,7 @@ components: - id: MP semantic: PhenotypicFeature predicate: related_to - source: mgi_gene2phenotype + source: "infores:mgi" parameters: fields: _id size: '300' diff --git a/biolink/openapi.yml b/biolink/openapi.yml index 81645452..99457c3a 100644 --- a/biolink/openapi.yml +++ b/biolink/openapi.yml @@ -10,6 +10,7 @@ info: title: BioLink API version: 1.0.1 x-translator: + infores-curie: "infores:biolink-api" component: KP team: ## check what teams are involved @@ -492,7 +493,7 @@ components: - id: HGNC semantic: Gene predicate: expresses - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/anatomy-gene-hgnc" @@ -509,7 +510,7 @@ components: - id: HGNC semantic: Gene predicate: condition_associated_with_gene - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-gene-hgnc" @@ -526,7 +527,7 @@ components: - id: REACT semantic: Pathway predicate: related_to - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-pathway" @@ -543,7 +544,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: has_phenotype - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-phenotype" @@ -560,7 +561,7 @@ components: - id: UBERON semantic: AnatomicalEntity predicate: expressed_in - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/gene-anatomy" @@ -577,7 +578,7 @@ components: - id: MONDO semantic: Disease predicate: gene_associated_with_condition - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/gene-disease" @@ -594,7 +595,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: has_phenotype - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/gene-phenotype" @@ -611,7 +612,7 @@ components: - id: HGNC semantic: Gene predicate: interacts_with - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/gene-interaction-hgnc" @@ -628,7 +629,7 @@ components: - id: MONDO semantic: Disease predicate: related_to - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/pathway-disease" @@ -645,7 +646,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: related_to - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/pathway-phenotype" @@ -662,7 +663,7 @@ components: - id: MONDO semantic: Disease predicate: phenotype_of - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/phenotype-disease" @@ -679,7 +680,7 @@ components: - id: HGNC semantic: Gene predicate: condition_associated_with_gene - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/phenotype-gene-hgnc" @@ -696,7 +697,7 @@ components: - id: REACT semantic: Pathway predicate: related_to - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/phenotype-pathway" @@ -713,7 +714,7 @@ components: - id: DBSNP semantic: SequenceVariant predicate: phenotype_of - source: "Monarch Initiative" + source: "infores:monarchinitiative" supportBatch: false response_mapping: "$ref": "#/components/x-bte-response-mapping/phenotype-variant" diff --git a/dgidb/openapi.yml b/dgidb/openapi.yml index 315e13d5..fafc00ba 100644 --- a/dgidb/openapi.yml +++ b/dgidb/openapi.yml @@ -10,6 +10,7 @@ info: title: BioThings DGIdb API version: '1.0' x-translator: + infores-curie: "infores:biothings-dgidb" component: KP team: - Service Provider @@ -431,7 +432,7 @@ components: predicate: physically_interacts_with response_mapping: $ref: '#/components/x-bte-response-mapping/chemical-gene' - source: DGIdb + source: "infores:dgidb" supportBatch: false inputSeparator: "," gene-chemical: @@ -452,7 +453,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/gene-chemical' - source: DGIdb + source: "infores:dgidb" supportBatch: true inputSeparator: "," x-bte-response-mapping: diff --git a/drug_response_kp/smartapi.yaml b/drug_response_kp/smartapi.yaml index 26bb8b69..4754203f 100644 --- a/drug_response_kp/smartapi.yaml +++ b/drug_response_kp/smartapi.yaml @@ -10,6 +10,7 @@ info: title: Drug Response KP API version: '1.0' x-translator: + infores-curie: "infores:biothings-multiomics-drug-response" component: KP team: - Multiomics Provider @@ -392,7 +393,8 @@ components: predicate: response_affected_by response_mapping: $ref: '#/components/x-bte-response-mapping/chemical-gene' - source: Multiomics Provider + ## note: source should be the source of data used + # source: Multiomics Provider supportBatch: false gene-chemical: - inputs: @@ -410,7 +412,8 @@ components: predicate: affects_response_to response_mapping: $ref: '#/components/x-bte-response-mapping/gene-chemical' - source: Multiomics Provider + ## note: source should be the source of data used + # source: Multiomics Provider supportBatch: false x-bte-response-mapping: chemical-gene: diff --git a/go_bp/smartapi.yaml b/go_bp/smartapi.yaml index ff87e173..0dbd81e0 100644 --- a/go_bp/smartapi.yaml +++ b/go_bp/smartapi.yaml @@ -10,6 +10,7 @@ info: title: Gene Ontology Biological Process API version: '1.0' x-translator: + infores-curie: "infores:biothings-go-bp" component: KP team: - Service Provider @@ -401,7 +402,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/has_subclass' - source: Gene Ontology + source: "infores:go" supportBatch: true subclass_of: - inputSeparator: ',' @@ -421,7 +422,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/subclass_of' - source: Gene Ontology + source: "infores:go" supportBatch: true negatively_regulates: - inputSeparator: ',' @@ -441,7 +442,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/negatively_regulates' - source: Gene Ontology + source: "infores:go" supportBatch: true positively_regulates: - inputSeparator: ',' @@ -461,7 +462,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/positively_regulates' - source: Gene Ontology + source: "infores:go" supportBatch: true regulates: - inputSeparator: ',' @@ -481,7 +482,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/regulates' - source: Gene Ontology + source: "infores:go" supportBatch: true negatively_regulated_by: - inputSeparator: ',' @@ -501,7 +502,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/negatively_regulated_by' - source: Gene Ontology + source: "infores:go" supportBatch: true positively_regulated_by: - inputSeparator: ',' @@ -521,7 +522,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/positively_regulated_by' - source: Gene Ontology + source: "infores:go" supportBatch: true regulated_by: - inputSeparator: ',' @@ -541,7 +542,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/regulated_by' - source: Gene Ontology + source: "infores:go" supportBatch: true part_of: - inputSeparator: ',' @@ -561,7 +562,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/part_of' - source: Gene Ontology + source: "infores:go" supportBatch: true has_part: - inputSeparator: ',' @@ -581,7 +582,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/has_part' - source: Gene Ontology + source: "infores:go" supportBatch: true x-bte-response-mapping: has_subclass: diff --git a/go_mf/smartapi.yaml b/go_mf/smartapi.yaml index 3981dbcb..f14495d7 100644 --- a/go_mf/smartapi.yaml +++ b/go_mf/smartapi.yaml @@ -10,6 +10,7 @@ info: title: Gene Ontology Molecular Activity API version: '1.0' x-translator: + infores-curie: "infores:biothings-go-mf" component: KP team: - Service Provider @@ -395,7 +396,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/has_subclass' - source: Gene Ontology + source: "infores:go" supportBatch: true subclass_of: - inputSeparator: ',' @@ -415,7 +416,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/subclass_of' - source: Gene Ontology + source: "infores:go" supportBatch: true part_of: - inputSeparator: ',' @@ -435,7 +436,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/part_of' - source: Gene Ontology + source: "infores:go" supportBatch: true has_part: - inputSeparator: ',' @@ -455,7 +456,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/has_part' - source: Gene Ontology + source: "infores:go" supportBatch: true x-bte-response-mapping: has_subclass: diff --git a/hpo/smartapi.yaml b/hpo/smartapi.yaml index 09ed7b68..04ee5f62 100644 --- a/hpo/smartapi.yaml +++ b/hpo/smartapi.yaml @@ -10,6 +10,7 @@ info: title: Human Phenotype Ontology API version: '1.0' x-translator: + infores-curie: "infores:biothings-hpo" component: KP team: - Service Provider @@ -391,7 +392,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/has_subclass' - source: Human Phenotype Ontology + source: "infores:hpo" supportBatch: true subclass_of: - inputSeparator: ',' @@ -411,7 +412,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/subclass_of' - source: Human Phenotype Ontology + source: "infores:hpo" supportBatch: true x-bte-response-mapping: has_subclass: diff --git a/litvar/smartapi.yaml b/litvar/smartapi.yaml index 94ceac6c..acd1c553 100644 --- a/litvar/smartapi.yaml +++ b/litvar/smartapi.yaml @@ -12,6 +12,7 @@ info: name: Zhiyong Lu email: luzh@ncbi.nlm.nih.gov x-translator: + infores-curie: "infores:litvar" component: KP team: - Service Provider @@ -49,7 +50,7 @@ components: - id: SYMBOL semantic: Gene predicate: is_sequence_variant_of - source: dbsnp + source: "infores:dbsnp" parameters: variantid: "{inputs[0]}%23%23" supportBatch: false diff --git a/mychem.info/openapi_full.yml b/mychem.info/openapi_full.yml index 37ba8928..1b0dbd2a 100644 --- a/mychem.info/openapi_full.yml +++ b/mychem.info/openapi_full.yml @@ -11,6 +11,7 @@ info: title: MyChem.info API version: '1.0' x-translator: + infores-curie: "infores:mychem-info" component: KP team: - Service Provider @@ -416,6 +417,8 @@ components: DRUGBANK: drugbank.id chembl: CHEMBL.COMPOUND: chembl.molecule_chembl_id + drugcentral-chembl: + CHEMBL.COMPOUND: drugcentral.xrefs.chembl_id chembl-treats: MESH: chembl.drug_indications.mesh_id max_phase: chembl.drug_indications.max_phase_for_ind @@ -438,7 +441,7 @@ components: ## biolink issue #677. Using a new predicate like has_substrate may be better ## could use relation SIO:000905 "has substrate" predicate: metabolic_processing_affected_by - source: drugbank + source: "infores:drugbank" ## FYI: output format can also be uniprot ID outputs: - id: SYMBOL @@ -465,7 +468,7 @@ components: ## biolink issue #677. Using a new predicate like has_target may be better ## could use relation SIO:000291 ("has target") predicate: physically_interacts_with - source: drugbank + source: "infores:drugbank" response_mapping: "$ref": "#/components/x-bte-response-mapping/target-drugbank" - supportBatch: true @@ -475,7 +478,9 @@ components: requestBody: body: q: "{inputs[0]}" - scopes: chembl.molecule_chembl_id + ## there are 2382 records with drugcentral.bioactivity fields + ## most of them (2362) also have the drugcentral.xrefs.chembl_id field + scopes: drugcentral.xrefs.chembl_id header: application/x-www-form-urlencoded inputs: - id: CHEMBL.COMPOUND @@ -487,7 +492,7 @@ components: ## biolink issue #677. Using a new predicate like has_target may be better ## could use relation SIO:000291 ("has target") predicate: physically_interacts_with - source: drugcentral + source: "infores:drugcentral" response_mapping: "$ref": "#/components/x-bte-response-mapping/target-drugcentral" treats: @@ -498,7 +503,10 @@ components: requestBody: body: q: "{inputs[0]}" - scopes: chembl.molecule_chembl_id + ## there are 2366 records with drugcentral.drug_use.indication fields + ## most of them (2320) also have the drugcentral.xrefs.chembl_id field + ## note: there were slightly more records (2324) with the drugcentral.xrefs.unii field + scopes: drugcentral.xrefs.chembl_id header: application/x-www-form-urlencoded inputs: - id: CHEMBL.COMPOUND @@ -508,7 +516,7 @@ components: - id: UMLS semantic: Disease predicate: treats - source: drugcentral + source: "infores:drugcentral" response_mapping: "$ref": "#/components/x-bte-response-mapping/treats" contraindication: @@ -519,7 +527,9 @@ components: requestBody: body: q: "{inputs[0]}" - scopes: chembl.molecule_chembl_id + ## there are 1375 records with drugcentral.drug_use.contraindication fields + ## most of them (1365) also have the drugcentral.xrefs.chembl_id field + scopes: :drugcentral.xrefs.chembl_id header: application/x-www-form-urlencoded inputs: - id: CHEMBL.COMPOUND @@ -529,7 +539,7 @@ components: - id: UMLS semantic: Disease predicate: contraindicated_for ## current biolink predicate - source: drugcentral + source: "infores:drugcentral" response_mapping: "$ref": "#/components/x-bte-response-mapping/contraindication" metabolize: @@ -549,7 +559,7 @@ components: ## biolink issue #677. Using a new predicate like is_substrate_of may be better ## could use relation DRUGBANK:Enzyme, DIDEO:00000041 "is substrate of", or NCIT:R122 "Chemical_Or_Drug_Is_Metabolized_By_Enzyme" predicate: affects_metabolic_processing_of - source: drugbank + source: "infores:drugbank" ## input could also be uniprot IDs (different scopes) inputs: - id: SYMBOL @@ -577,13 +587,15 @@ components: ## biolink issue #677. Using a new predicate like targeted_by may be better ## could use relation GENO:0000634 ("is_targeted_by") predicate: physically_interacts_with - source: drugbank + source: "infores:drugbank" response_mapping: "$ref": "#/components/x-bte-response-mapping/drugbank" - supportBatch: true inputSeparator: "," parameters: - fields: chembl.molecule_chembl_id + ## there are 2382 records with drugcentral.bioactivity fields + ## most of them (2362) also have the drugcentral.xrefs.chembl_id field + fields: drugcentral.xrefs.chembl_id size: '1000' requestBody: body: @@ -600,14 +612,17 @@ components: ## biolink issue #677. Using a new predicate like targeted_by may be better ## could use relation GENO:0000634 ("is_targeted_by") predicate: physically_interacts_with - source: drugcentral + source: "infores:drugcentral" response_mapping: - "$ref": "#/components/x-bte-response-mapping/chembl" + "$ref": "#/components/x-bte-response-mapping/drugcentral-chembl" treatedBy: - supportBatch: true inputSeparator: "," parameters: - fields: chembl.molecule_chembl_id + ## there are 2366 records with drugcentral.drug_use.indication fields + ## most of them (2320) also have the drugcentral.xrefs.chembl_id field + ## note: there were slightly more records (2324) with the drugcentral.xrefs.unii field + fields: drugcentral.xrefs.chembl_id size: '1000' requestBody: body: @@ -622,14 +637,16 @@ components: - id: UMLS semantic: Disease predicate: treated_by - source: drugcentral + source: "infores:drugcentral" response_mapping: - "$ref": "#/components/x-bte-response-mapping/chembl" + "$ref": "#/components/x-bte-response-mapping/drugcentral-chembl" contraindicatedBy: - supportBatch: true inputSeparator: "," parameters: - fields: chembl.molecule_chembl_id + ## there are 1375 records with drugcentral.drug_use.contraindication fields + ## most of them (1365) also have the drugcentral.xrefs.chembl_id field + fields: drugcentral.xrefs.chembl_id size: '1000' requestBody: body: @@ -644,9 +661,9 @@ components: - id: UMLS semantic: Disease predicate: has_contraindication - source: drugcentral + source: "infores:drugcentral" response_mapping: - "$ref": "#/components/x-bte-response-mapping/chembl" + "$ref": "#/components/x-bte-response-mapping/drugcentral-chembl" treats2: - supportBatch: true inputSeparator: "," @@ -667,7 +684,7 @@ components: semantic: Disease ## Biolink PR to make this predicate, as an inverse of "contraindicated for" predicate: treats - source: chembl + source: "infores:chembl" response_mapping: "$ref": "#/components/x-bte-response-mapping/chembl-treats" treated_by2: @@ -690,6 +707,6 @@ components: semantic: Disease ## Biolink PR to make this predicate, as an inverse of "contraindicated for" predicate: treated_by - source: chembl + source: "infores:chembl" response_mapping: "$ref": "#/components/x-bte-response-mapping/chembl" \ No newline at end of file diff --git a/mydisease.info/smartapi.yaml b/mydisease.info/smartapi.yaml index b538983e..6324feee 100644 --- a/mydisease.info/smartapi.yaml +++ b/mydisease.info/smartapi.yaml @@ -6,6 +6,7 @@ info: x-id: https://github.com/newgene x-role: responsible developer x-translator: + infores-curie: "infores:mydisease-info" component: KP team: - Service Provider @@ -442,7 +443,7 @@ components: requestBody: body: q: "{inputs[0]}" ## example: put C0024776 here - scopes: mondo.xrefs.umls, disgenet.xrefs.umls + scopes: disgenet.xrefs.umls header: application/x-www-form-urlencoded inputs: - id: UMLS @@ -451,7 +452,7 @@ components: - id: NCBIGene semantic: Gene predicate: related_to - source: DisGeNET + source: "infores:disgenet" response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-gene" disease-variant: @@ -462,7 +463,7 @@ components: requestBody: body: q: "{inputs[0]}" ## example: put C0024776 here - scopes: mondo.xrefs.umls, disgenet.xrefs.umls + scopes: disgenet.xrefs.umls header: application/x-www-form-urlencoded inputs: - id: UMLS @@ -471,7 +472,7 @@ components: - id: DBSNP semantic: SequenceVariant predicate: related_to - source: DisGeNET + source: "infores:disgenet" response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-variant" disease-phenotype: @@ -491,7 +492,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: has_phenotype - source: HPO Annotations + source: "infores:hpo-annotations" response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-phenotype" disease-phenotype2: @@ -511,7 +512,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: has_phenotype - source: HPO Annotations + source: "infores:hpo-annotations" response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-phenotype" disease-phenotype3: ## covid only @@ -531,7 +532,7 @@ components: - id: HP semantic: PhenotypicFeature predicate: has_phenotype - source: Automat covid_phenotypes + source: "infores:automat-covid-phenotypes" ## but an older downloaded version... response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-phenotype2" disease-chemical: @@ -553,7 +554,7 @@ components: - id: MESH semantic: ChemicalSubstance predicate: related_to - source: CTD + source: "infores:ctd" response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-chemical" disease-chemical2: @@ -575,7 +576,7 @@ components: - id: MESH semantic: ChemicalSubstance predicate: related_to - source: CTD + source: "infores:ctd" response_mapping: "$ref": "#/components/x-bte-response-mapping/disease-chemical" # disease-pathway: ## input is MESH Disease, example: put C536029 here @@ -596,7 +597,7 @@ components: # - id: REACT # semantic: Pathway # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/disease-pathway" # ## output is KEGG pathway ID @@ -616,7 +617,7 @@ components: # - id: KEGG # semantic: Pathway # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/disease-pathway2" # disease-pathway2: ## input is OMIM Disease, example: put 261515 here @@ -637,7 +638,7 @@ components: # - id: REACT # semantic: Pathway # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/disease-pathway" # ## output is KEGG pathway ID @@ -657,7 +658,7 @@ components: # - id: KEGG # semantic: Pathway # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/disease-pathway2" gene-disease: @@ -679,7 +680,7 @@ components: - id: UMLS semantic: Disease predicate: related_to - source: DisGeNET + source: "infores:disgenet" response_mapping: "$ref": "#/components/x-bte-response-mapping/umls" variant-disease: @@ -701,7 +702,7 @@ components: - id: UMLS semantic: Disease predicate: related_to - source: DisGeNET + source: "infores:disgenet" response_mapping: "$ref": "#/components/x-bte-response-mapping/umls" phenotype-disease: @@ -725,7 +726,7 @@ components: - id: OMIM semantic: Disease predicate: phenotype_of - source: HPO Annotations + source: "infores:hpo-annotations" response_mapping: "$ref": "#/components/x-bte-response-mapping/omim" phenotype-disease2: @@ -749,7 +750,7 @@ components: - id: ORPHANET semantic: Disease predicate: phenotype_of - source: HPO Annotations + source: "infores:hpo-annotations" response_mapping: "$ref": "#/components/x-bte-response-mapping/orphanet" phenotype-disease3: ## covid only @@ -771,7 +772,7 @@ components: - id: MONDO semantic: Disease predicate: phenotype_of - source: Automat covid_phenotypes + source: "infores:automat-covid-phenotypes" response_mapping: "$ref": "#/components/x-bte-response-mapping/mondo" chemical-disease: @@ -795,7 +796,7 @@ components: - id: MESH semantic: Disease predicate: related_to - source: CTD + source: "infores:ctd" response_mapping: "$ref": "#/components/x-bte-response-mapping/ctd-mesh-disease" chemical-disease2: @@ -819,7 +820,7 @@ components: - id: OMIM semantic: Disease predicate: related_to - source: CTD + source: "infores:ctd" response_mapping: "$ref": "#/components/x-bte-response-mapping/ctd-omim-disease" # pathway-disease: ## input is REACT pathway ID, example: put R-HSA-1280218 or R-HSA-5619084 here @@ -842,7 +843,7 @@ components: # - id: MESH # semantic: Disease # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/ctd-mesh-disease" # ## output is OMIM Disease @@ -864,7 +865,7 @@ components: # - id: OMIM # semantic: Disease # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/ctd-omim-disease" # pathway-disease2: ## input is KEGG pathway ID, example: put hsa04360 or hsa00230 here @@ -887,7 +888,7 @@ components: # - id: MESH # semantic: Disease # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/ctd-mesh-disease" # ## output is OMIM Disease @@ -909,7 +910,7 @@ components: # - id: OMIM # semantic: Disease # predicate: related_to -# source: CTD +# source: "infores:ctd" # response_mapping: # "$ref": "#/components/x-bte-response-mapping/ctd-omim-disease" has_subclass: @@ -933,7 +934,7 @@ components: - id: MONDO semantic: Disease predicate: superclass_of ## this is the inverse of subclass_of right now - source: MONDO + source: "infores:mondo" response_mapping: "$ref": "#/components/x-bte-response-mapping/has_subclass" subclass_of: @@ -957,6 +958,6 @@ components: - id: MONDO semantic: Disease predicate: subclass_of - source: MONDO + source: "infores:mondo" response_mapping: "$ref": "#/components/x-bte-response-mapping/subclass_of" diff --git a/mygene.info/openapi_full.yml b/mygene.info/openapi_full.yml index cd97b99e..aacc1abe 100644 --- a/mygene.info/openapi_full.yml +++ b/mygene.info/openapi_full.yml @@ -232,6 +232,7 @@ components: id: NCBIGene semantic: Gene parameters: + ## all records with pathway.reactome.id field also have entrezgene field fields: entrezgene species: human predicate: has_participant @@ -243,7 +244,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/entrezgene" - source: Reactome + source: "infores:reactome" supportBatch: true - inputSeparator: "," @@ -257,6 +258,7 @@ components: id: NCBIGene semantic: Gene parameters: + ## all records with pathway.kegg field also have entrezgene field fields: entrezgene species: human predicate: has_participant @@ -268,8 +270,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/entrezgene" - ## don't abbreviate since multiple resources named "CPDB" - source: ConsensusPathDB + source: "infores:cpdb" ## ConsensusPathDB supportBatch: true - inputSeparator: "," @@ -283,6 +284,7 @@ components: id: NCBIGene semantic: Gene parameters: + ## all records with pathway.wikipathways field also have entrezgene field fields: entrezgene species: human predicate: has_participant @@ -294,8 +296,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/entrezgene" - ## don't abbreviate since multiple resources named "CPDB" - source: ConsensusPathDB + source: "infores:cpdb" ## ConsensusPathDB supportBatch: true - inputSeparator: "," @@ -309,6 +310,7 @@ components: id: NCBIGene semantic: Gene parameters: + ## all records with pathway.biocarta field also have entrezgene field fields: entrezgene species: human predicate: has_participant @@ -320,10 +322,8 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/entrezgene" - ## don't abbreviate since multiple resources named "CPDB" - source: ConsensusPathDB + source: "infores:cpdb" ## ConsensusPathDB supportBatch: true - enablesMF: ## biolink: weird predicate. biolink doesn't have something like has_activity/has_function ## future: relation could be RO:0000085 (has_function), but this currently isn't mapped to biolink @@ -344,11 +344,12 @@ components: requestBody: body: q: "{inputs[0]}" + ## all records with go.MF field also have entrezgene field scopes: entrezgene header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/molecularFunction" - source: "NCBI Gene" + source: "infores:ncbi-gene" ## which got from GO Annotations... supportBatch: true MFToGene: ## biolink: weird predicate. biolink doesn't have something like activity_of/function_of @@ -364,6 +365,7 @@ components: id: NCBIGene semantic: Gene parameters: + ## all records with go.MF field also have entrezgene field fields: entrezgene species: human predicate: enabled_by @@ -375,7 +377,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/entrezgene" - source: "NCBI Gene" + source: "infores:ncbi-gene" ## which got from GO Annotations... supportBatch: true GeneToProtein: ## future: relation could be RO:0002205 (has_gene_product), currently mapped to biolink:has_gene_product @@ -391,6 +393,8 @@ components: semantic: Protein parameters: fields: uniprot.Swiss-Prot + ## there are >107,000 records with both uniprot and ensembl.gene fields + ## (vs >244,000 records with only uniprot fields) species: human predicate: has_gene_product requestBody: @@ -401,7 +405,7 @@ components: response_mapping: $ref: "#/components/x-bte-response-mapping/uniprotProtein" ## specifically from the ID mapping file https://www.uniprot.org/downloads#uniprotkblink - source: UniprotKB + source: "infores:uniprot" supportBatch: true ProteinToGene: ## relation: use RO:0002204 (gene_product_of) @@ -417,6 +421,8 @@ components: semantic: Gene parameters: fields: ensembl.gene + ## there are >107,000 records with both uniprot and ensembl.gene fields + ## (vs >244,000 records with only uniprot fields) species: human predicate: gene_product_of requestBody: @@ -427,7 +433,7 @@ components: response_mapping: $ref: "#/components/x-bte-response-mapping/ensemblGene" ## specifically from the ID mapping file https://www.uniprot.org/downloads#uniprotkblink - source: UniprotKB + source: "infores:uniprot" supportBatch: true ## pantherdb gives orthologs and paralogs, which are both homologs. Hence we use homolog ## currently written: MGI, RGD, ZFIN, WormBase, SGD, dictyBase, POMBASE @@ -446,6 +452,8 @@ components: semantic: Gene parameters: fields: pantherdb.ortholog + ## almost all records with pantherdb.ortholog fields also have the entrezgene field + ## > 145,000 records have both fields, vs ~ 3600 records don't have the entrezgene field predicate: homologous_to requestBody: body: @@ -454,7 +462,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/pantherMGI" - source: PANTHER + source: "infores:panther" supportBatch: true # - # inputSeparator: "," @@ -476,7 +484,7 @@ components: # header: application/x-www-form-urlencoded # response_mapping: # $ref: "#/components/x-bte-response-mapping/pantherRGD" -# source: PANTHER +# source: "infores:panther" # supportBatch: true # - # inputSeparator: "," @@ -498,7 +506,7 @@ components: # header: application/x-www-form-urlencoded # response_mapping: # $ref: "#/components/x-bte-response-mapping/pantherZFIN" -# source: PANTHER +# source: "infores:panther" # supportBatch: true # - # inputSeparator: "," @@ -520,7 +528,7 @@ components: # header: application/x-www-form-urlencoded # response_mapping: # $ref: "#/components/x-bte-response-mapping/pantherWorm" -# source: PANTHER +# source: "infores:panther" # supportBatch: true # - # inputSeparator: "," @@ -542,7 +550,7 @@ components: # header: application/x-www-form-urlencoded # response_mapping: # $ref: "#/components/x-bte-response-mapping/pantherSGD" -# source: PANTHER +# source: "infores:panther" # supportBatch: true # - # inputSeparator: "," @@ -564,7 +572,7 @@ components: # header: application/x-www-form-urlencoded # response_mapping: # $ref: "#/components/x-bte-response-mapping/pantherDicty" -# source: PANTHER +# source: "infores:panther" # supportBatch: true # - # inputSeparator: "," @@ -586,7 +594,7 @@ components: # header: application/x-www-form-urlencoded # response_mapping: # $ref: "#/components/x-bte-response-mapping/pantherPom" -# source: PANTHER +# source: "infores:panther" # supportBatch: true hasTranscript: ## future: relation could be RO:0002511 (transcribed_to) @@ -611,7 +619,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/ensemblTranscript" - source: Ensembl + source: "infores:ensembl-gene" ## ensembl or specifically ensembl-gene? supportBatch: true involvedInBP: ## biolink: confusing. biolink currently doesn't have involved_in; this could also be contributes_to? @@ -627,6 +635,7 @@ components: id: GO semantic: BiologicalProcess parameters: + ## all records with go.BP field also have entrezgene field fields: go.BP species: human predicate: participates_in @@ -637,7 +646,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/biologicalProcess" - source: "NCBI Gene" + source: "infores:ncbi-gene" ## which got from GO Annotations... supportBatch: true BPToGene: ## biolink: confusing, hard to find inverse for @@ -653,6 +662,7 @@ components: id: NCBIGene semantic: Gene parameters: + ## all records with go.BP field also have entrezgene field fields: entrezgene species: human predicate: has_participant @@ -664,7 +674,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/entrezgene" - source: "NCBI Gene" + source: "infores:ncbi-gene" ## which got from GO Annotations... supportBatch: true involvedInCC: ## biolink: confusing, since it's a gene whose activity takes place in the cellular component (complex or organelle) - not a direct biological relationship @@ -681,6 +691,7 @@ components: id: GO semantic: CellularComponent parameters: + ## all records with go.CC field also have entrezgene field fields: go.CC species: human predicate: expressed_in @@ -691,7 +702,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/cellularComponent" - source: "NCBI Gene" + source: "infores:ncbi-gene" ## which got from GO Annotations... supportBatch: true CCToGene: ## biolink: confusing, since it's a gene whose activity takes place in the cellular component (complex or organelle) - not a direct biological relationship @@ -708,6 +719,7 @@ components: id: NCBIGene semantic: Gene parameters: + ## all records with go.CC field also have entrezgene field fields: entrezgene species: human predicate: expresses @@ -719,7 +731,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/entrezgene" - source: "NCBI Gene" + source: "infores:ncbi-gene" ## which got from GO Annotations... supportBatch: true involvedInPathway: ## using Reactome, KEGG, Wikipathways ## future: use relation "NCIT:gene_is_element_in_pathway" or RO:0000056 (participates in), both mapped to biolink:participates_in @@ -741,11 +753,12 @@ components: requestBody: body: q: "{inputs[0]}" + ## all records with pathway.reactome.id field also have entrezgene field scopes: entrezgene header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/reactomePathway" - source: Reactome + source: "infores:reactome" supportBatch: true - inputSeparator: "," @@ -765,11 +778,12 @@ components: requestBody: body: q: "{inputs[0]}" + ## all records with pathway.kegg field also have entrezgene field scopes: entrezgene header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/keggPathway" - source: ConsensusPathDB + source: "infores:cpdb" ## ConsensusPathDB supportBatch: true - inputSeparator: "," @@ -789,11 +803,12 @@ components: requestBody: body: q: "{inputs[0]}" + ## all records with pathway.wikipathways field also have entrezgene field scopes: entrezgene header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/wikipathway" - source: ConsensusPathDB + source: "infores:cpdb" ## ConsensusPathDB supportBatch: true - inputSeparator: "," @@ -813,11 +828,12 @@ components: requestBody: body: q: "{inputs[0]}" + ## all records with pathway.biocarta field also have entrezgene field scopes: entrezgene header: application/x-www-form-urlencoded response_mapping: $ref: "#/components/x-bte-response-mapping/biocarta" - source: ConsensusPathDB + source: "infores:cpdb" ## ConsensusPathDB supportBatch: true x-bte-response-mapping: # ENSEMBL: ensembl.gene @@ -906,6 +922,7 @@ info: title: "MyGene.info API" version: "3.0" x-translator: + infores-curie: "infores:mygene-info" component: KP team: - "Service Provider" diff --git a/myvariant.info/openapi_full.yml b/myvariant.info/openapi_full.yml index b704b177..91c1c40f 100644 --- a/myvariant.info/openapi_full.yml +++ b/myvariant.info/openapi_full.yml @@ -11,6 +11,7 @@ info: title: MyVariant.info API version: '1.0' x-translator: + infores-curie: "infores:myvariant-info" component: KP team: - Service Provider @@ -369,7 +370,7 @@ components: parameters: fields: dbsnp.gene.geneid predicate: is_sequence_variant_of - source: dbsnp + source: "infores:dbsnp" requestBody: body: q: "{inputs[0]}" @@ -387,12 +388,14 @@ components: - supportBatch: true inputSeparator: "," parameters: + ## maybe use clinvar variant ID (clinvar.variant_id) or allele ID (clinvar.allele_id) instead fields: clinvar.rcv predicate: related_to - source: clinvar + source: "infores:clinvar" requestBody: body: q: "{inputs[0]}" + ## out of > 862,000 records with clinvar.rcv field, >695,000 records also have dbsnp.rsid scopes: dbsnp.rsid header: application/x-www-form-urlencoded inputs: @@ -407,10 +410,11 @@ components: - supportBatch: true inputSeparator: "," parameters: + ## out of > 862,000 records with clinvar.rcv field, >695,000 records also have dbsnp.rsid fields: dbsnp.rsid size: '250' predicate: related_to - source: clinvar + source: "infores:clinvar" requestBody: body: q: "{inputs[0]}" @@ -428,10 +432,13 @@ components: - supportBatch: true inputSeparator: "," parameters: + ## any way to improve retrieval of info with a variant ID? + ## out of 2648 records with civic.evidence_items field, 653 records also have dbsnp.rsid + ## note that some records' _id field is the CIVIC variant ID (not MYVARIANT_HG19) fields: civic.evidence_items size: '1000' predicate: affects_response_to - source: civic + source: "infores:civic" requestBody: body: q: "{inputs[0]}" diff --git a/ols/smartapi.yaml b/ols/smartapi.yaml index 355071e9..b9913c9d 100644 --- a/ols/smartapi.yaml +++ b/ols/smartapi.yaml @@ -13,6 +13,7 @@ info: x-role: responsible developer email: help@pharmgkb.org x-translator: + infores-curie: "infores:ols" component: KP team: - Service Provider @@ -46,7 +47,7 @@ components: - id: DOID semantic: Disease predicate: superclass_of ## this is current biolink, same meaning as "has_subclass" - source: DO ## follows same format as mydisease.info MONDO-based operations + source: "infores:disease-ontology" outputs: - id: DOID semantic: Disease diff --git a/opentarget/smartapi.yaml b/opentarget/smartapi.yaml index 04cbec51..620d5514 100644 --- a/opentarget/smartapi.yaml +++ b/opentarget/smartapi.yaml @@ -9,6 +9,7 @@ info: x-role: responsible developer email: help@opentarget.org x-translator: + infores-curie: "infores:open-target" component: KP team: - Service Provider @@ -63,7 +64,7 @@ components: - id: CHEMBL.COMPOUND semantic: ChemicalSubstance predicate: related_to - source: CHEMBL + source: "infores:chembl" parameters: target: "{inputs[0]}" datasource: chembl diff --git a/quickgo/smartapi.yaml b/quickgo/smartapi.yaml index c841b052..12861a94 100644 --- a/quickgo/smartapi.yaml +++ b/quickgo/smartapi.yaml @@ -14,6 +14,7 @@ info: x-role: responsible developer email: help@pharmgkb.org x-translator: + infores-curie: "infores:ebi-quick-go" component: KP team: - Service Provider @@ -46,7 +47,7 @@ components: - inputs: - id: GO semantic: MolecularActivity - source: Gene Ontology + source: "infores:go" predicate: superclass_of ## this is current biolink, same meaning as "has_subclass" outputs: - id: GO diff --git a/semmed/semmed_anatomy.yaml b/semmed/semmed_anatomy.yaml index e5efa878..45fa1587 100644 --- a/semmed/semmed_anatomy.yaml +++ b/semmed/semmed_anatomy.yaml @@ -12,6 +12,7 @@ info: title: SEMMED Anatomy API version: '1.0' x-translator: + infores-curie: "infores:biothings-semmeddb-anatomy" component: KP team: - Service Provider @@ -417,7 +418,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -438,7 +439,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -459,7 +460,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -480,7 +481,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -501,7 +502,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -522,7 +523,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -543,7 +544,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -564,7 +565,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -585,7 +586,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -606,7 +607,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -627,7 +628,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -648,7 +649,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -669,7 +670,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -690,7 +691,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -711,7 +712,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -732,7 +733,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -753,7 +754,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -774,7 +775,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -795,7 +796,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -816,7 +817,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -837,7 +838,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -858,7 +859,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -879,7 +880,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -900,7 +901,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -921,7 +922,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -942,7 +943,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -963,7 +964,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -984,7 +985,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1005,7 +1006,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1026,7 +1027,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1047,7 +1048,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1068,7 +1069,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1089,7 +1090,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1110,7 +1111,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1131,7 +1132,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1152,7 +1153,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1173,7 +1174,7 @@ components: - id: UMLS semantic: AnatomicalEntity method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent diff --git a/semmed/semmed_biological_process.yaml b/semmed/semmed_biological_process.yaml index 8d26bd62..5323d7d5 100644 --- a/semmed/semmed_biological_process.yaml +++ b/semmed/semmed_biological_process.yaml @@ -12,6 +12,7 @@ info: title: SEMMED Biological Process API version: '1.0' x-translator: + infores-curie: "infores:biothings-semmeddb-biological-process" component: KP team: - Service Provider @@ -447,7 +448,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -468,7 +469,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -489,7 +490,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -510,7 +511,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -531,7 +532,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -552,7 +553,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -573,7 +574,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -594,7 +595,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -615,7 +616,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -636,7 +637,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -657,7 +658,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -678,7 +679,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -699,7 +700,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -720,7 +721,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -741,7 +742,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -762,7 +763,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -783,7 +784,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -804,7 +805,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -825,7 +826,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -846,7 +847,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -867,7 +868,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -888,7 +889,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -909,7 +910,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -930,7 +931,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -951,7 +952,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -972,7 +973,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -993,7 +994,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1014,7 +1015,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1035,7 +1036,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1056,7 +1057,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1077,7 +1078,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1098,7 +1099,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1119,7 +1120,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1140,7 +1141,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1161,7 +1162,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1182,7 +1183,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1203,7 +1204,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1224,7 +1225,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1245,7 +1246,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1266,7 +1267,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1287,7 +1288,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1308,7 +1309,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1329,7 +1330,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1350,7 +1351,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1371,7 +1372,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1392,7 +1393,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1413,7 +1414,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1434,7 +1435,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1455,7 +1456,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1476,7 +1477,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1497,7 +1498,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1518,7 +1519,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1539,7 +1540,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1560,7 +1561,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1581,7 +1582,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1602,7 +1603,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1623,7 +1624,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1644,7 +1645,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1665,7 +1666,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1686,7 +1687,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1707,7 +1708,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1728,7 +1729,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1749,7 +1750,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1770,7 +1771,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1791,7 +1792,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1812,7 +1813,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1833,7 +1834,7 @@ components: - id: UMLS semantic: BiologicalProcess method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease diff --git a/semmed/semmed_chemical.yaml b/semmed/semmed_chemical.yaml index 2ca1b6d3..612ff65a 100644 --- a/semmed/semmed_chemical.yaml +++ b/semmed/semmed_chemical.yaml @@ -12,6 +12,7 @@ info: title: SEMMED Chemical API version: '1.0' x-translator: + infores-curie: "infores:biothings-semmeddb-chemical" component: KP team: - Service Provider @@ -473,7 +474,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -494,7 +495,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -515,7 +516,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -536,7 +537,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -557,7 +558,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -578,7 +579,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -599,7 +600,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -620,7 +621,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -641,7 +642,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -662,7 +663,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -683,7 +684,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -704,7 +705,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -725,7 +726,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -746,7 +747,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -767,7 +768,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -788,7 +789,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -809,7 +810,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -830,7 +831,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -851,7 +852,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -872,7 +873,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -893,7 +894,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -914,7 +915,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -935,7 +936,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -956,7 +957,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -977,7 +978,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -998,7 +999,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1019,7 +1020,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1040,7 +1041,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1061,7 +1062,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1082,7 +1083,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1103,7 +1104,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1124,7 +1125,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1145,7 +1146,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1166,7 +1167,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1187,7 +1188,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1208,7 +1209,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1229,7 +1230,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1250,7 +1251,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1271,7 +1272,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1292,7 +1293,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1313,7 +1314,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1334,7 +1335,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1355,7 +1356,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1376,7 +1377,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1397,7 +1398,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1418,7 +1419,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1439,7 +1440,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1460,7 +1461,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1481,7 +1482,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1502,7 +1503,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1523,7 +1524,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1544,7 +1545,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1565,7 +1566,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1586,7 +1587,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1607,7 +1608,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1628,7 +1629,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1649,7 +1650,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1670,7 +1671,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1691,7 +1692,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1712,7 +1713,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1733,7 +1734,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1754,7 +1755,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1775,7 +1776,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1796,7 +1797,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1817,7 +1818,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1838,7 +1839,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1859,7 +1860,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1880,7 +1881,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1901,7 +1902,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1922,7 +1923,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1943,7 +1944,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1964,7 +1965,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1985,7 +1986,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -2006,7 +2007,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -2027,7 +2028,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -2048,7 +2049,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -2069,7 +2070,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -2090,7 +2091,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -2111,7 +2112,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -2132,7 +2133,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -2153,7 +2154,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -2174,7 +2175,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -2195,7 +2196,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -2216,7 +2217,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -2237,7 +2238,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -2258,7 +2259,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -2279,7 +2280,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -2300,7 +2301,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -2321,7 +2322,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -2342,7 +2343,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -2363,7 +2364,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -2384,7 +2385,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -2405,7 +2406,7 @@ components: - id: UMLS semantic: ChemicalSubstance method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease diff --git a/semmed/semmed_disease.yaml b/semmed/semmed_disease.yaml index 9eb7a303..61a50a4b 100644 --- a/semmed/semmed_disease.yaml +++ b/semmed/semmed_disease.yaml @@ -12,6 +12,7 @@ info: title: SEMMED Disease API version: '1.0' x-translator: + infores-curie: "infores:biothings-semmeddb-disease" component: KP team: - Service Provider @@ -476,7 +477,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -497,7 +498,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -518,7 +519,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -539,7 +540,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -560,7 +561,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -581,7 +582,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -602,7 +603,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -623,7 +624,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -644,7 +645,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -665,7 +666,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -686,7 +687,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -707,7 +708,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -728,7 +729,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -749,7 +750,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -770,7 +771,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -791,7 +792,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -812,7 +813,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -833,7 +834,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -854,7 +855,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -875,7 +876,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -896,7 +897,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -917,7 +918,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -938,7 +939,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -959,7 +960,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -980,7 +981,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1001,7 +1002,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1022,7 +1023,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1043,7 +1044,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1064,7 +1065,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1085,7 +1086,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1106,7 +1107,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1127,7 +1128,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1148,7 +1149,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1169,7 +1170,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1190,7 +1191,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1211,7 +1212,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1232,7 +1233,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1253,7 +1254,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1274,7 +1275,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1295,7 +1296,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1316,7 +1317,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1337,7 +1338,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1358,7 +1359,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1379,7 +1380,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1400,7 +1401,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1421,7 +1422,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1442,7 +1443,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1463,7 +1464,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1484,7 +1485,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1505,7 +1506,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1526,7 +1527,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1547,7 +1548,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1568,7 +1569,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1589,7 +1590,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1610,7 +1611,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1631,7 +1632,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1652,7 +1653,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1673,7 +1674,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1694,7 +1695,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1715,7 +1716,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1736,7 +1737,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1757,7 +1758,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1778,7 +1779,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1799,7 +1800,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1820,7 +1821,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1841,7 +1842,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1862,7 +1863,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1883,7 +1884,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1904,7 +1905,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1925,7 +1926,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1946,7 +1947,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1967,7 +1968,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1988,7 +1989,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -2009,7 +2010,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -2030,7 +2031,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -2051,7 +2052,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -2072,7 +2073,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -2093,7 +2094,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -2114,7 +2115,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -2135,7 +2136,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -2156,7 +2157,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -2177,7 +2178,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -2198,7 +2199,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -2219,7 +2220,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -2240,7 +2241,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -2261,7 +2262,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -2282,7 +2283,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -2303,7 +2304,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -2324,7 +2325,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -2345,7 +2346,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -2366,7 +2367,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -2387,7 +2388,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -2408,7 +2409,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -2429,7 +2430,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -2450,7 +2451,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -2471,7 +2472,7 @@ components: - id: UMLS semantic: Disease method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease diff --git a/semmed/semmed_gene.yaml b/semmed/semmed_gene.yaml index dcfcaa96..38b10554 100644 --- a/semmed/semmed_gene.yaml +++ b/semmed/semmed_gene.yaml @@ -12,6 +12,7 @@ info: title: SEMMED Gene API version: '1.0' x-translator: + infores-curie: "infores:biothings-semmeddb-gene" component: KP team: - Service Provider @@ -454,7 +455,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -475,7 +476,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -496,7 +497,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -517,7 +518,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -538,7 +539,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -559,7 +560,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -580,7 +581,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -601,7 +602,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -622,7 +623,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -643,7 +644,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -664,7 +665,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -685,7 +686,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -706,7 +707,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -727,7 +728,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -748,7 +749,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -769,7 +770,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -790,7 +791,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -811,7 +812,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -832,7 +833,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -853,7 +854,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -874,7 +875,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -895,7 +896,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -916,7 +917,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -937,7 +938,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -958,7 +959,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -979,7 +980,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1000,7 +1001,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1021,7 +1022,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1042,7 +1043,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1063,7 +1064,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1084,7 +1085,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1105,7 +1106,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1126,7 +1127,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1147,7 +1148,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1168,7 +1169,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1189,7 +1190,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1210,7 +1211,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1231,7 +1232,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1252,7 +1253,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1273,7 +1274,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1294,7 +1295,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1315,7 +1316,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1336,7 +1337,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1357,7 +1358,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1378,7 +1379,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1399,7 +1400,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1420,7 +1421,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1441,7 +1442,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1462,7 +1463,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1483,7 +1484,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1504,7 +1505,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1525,7 +1526,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1546,7 +1547,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1567,7 +1568,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1588,7 +1589,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1609,7 +1610,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1630,7 +1631,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1651,7 +1652,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1672,7 +1673,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1693,7 +1694,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1714,7 +1715,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1735,7 +1736,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1756,7 +1757,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1777,7 +1778,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1798,7 +1799,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1819,7 +1820,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1840,7 +1841,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1861,7 +1862,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1882,7 +1883,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1903,7 +1904,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1924,7 +1925,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1945,7 +1946,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1966,7 +1967,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1987,7 +1988,7 @@ components: - id: UMLS semantic: Gene method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease diff --git a/semmed/semmed_phenotype.yaml b/semmed/semmed_phenotype.yaml index d865678f..eeff4807 100644 --- a/semmed/semmed_phenotype.yaml +++ b/semmed/semmed_phenotype.yaml @@ -12,6 +12,7 @@ info: title: SEMMED Phenotype API version: '1.0' x-translator: + infores-curie: "infores:biothings-semmeddb-phenotype" component: KP team: - Service Provider @@ -453,7 +454,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -474,7 +475,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -495,7 +496,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -516,7 +517,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -537,7 +538,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -558,7 +559,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -579,7 +580,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -600,7 +601,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -621,7 +622,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -642,7 +643,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -663,7 +664,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -684,7 +685,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -705,7 +706,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -726,7 +727,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -747,7 +748,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -768,7 +769,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -789,7 +790,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -810,7 +811,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -831,7 +832,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -852,7 +853,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -873,7 +874,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -894,7 +895,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -915,7 +916,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -936,7 +937,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -957,7 +958,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -978,7 +979,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -999,7 +1000,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1020,7 +1021,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1041,7 +1042,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1062,7 +1063,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1083,7 +1084,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1104,7 +1105,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1125,7 +1126,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1146,7 +1147,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1167,7 +1168,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1188,7 +1189,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1209,7 +1210,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1230,7 +1231,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1251,7 +1252,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1272,7 +1273,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1293,7 +1294,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1314,7 +1315,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1335,7 +1336,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1356,7 +1357,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1377,7 +1378,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1398,7 +1399,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1419,7 +1420,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1440,7 +1441,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1461,7 +1462,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1482,7 +1483,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1503,7 +1504,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1524,7 +1525,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1545,7 +1546,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1566,7 +1567,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Cell @@ -1587,7 +1588,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1608,7 +1609,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1629,7 +1630,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1650,7 +1651,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1671,7 +1672,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: CellularComponent @@ -1692,7 +1693,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1713,7 +1714,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1734,7 +1735,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1755,7 +1756,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1776,7 +1777,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1797,7 +1798,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1818,7 +1819,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1839,7 +1840,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: AnatomicalEntity @@ -1860,7 +1861,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: ChemicalSubstance @@ -1881,7 +1882,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: BiologicalProcess @@ -1902,7 +1903,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease @@ -1923,7 +1924,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: PhenotypicFeature @@ -1944,7 +1945,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Gene @@ -1965,7 +1966,7 @@ components: - id: UMLS semantic: PhenotypicFeature method: post - source: SEMMED + source: "infores:semmeddb" outputs: - id: UMLS semantic: Disease diff --git a/tcga_mut_freq/smartapi.yaml b/tcga_mut_freq/smartapi.yaml index 813f2676..4947deed 100644 --- a/tcga_mut_freq/smartapi.yaml +++ b/tcga_mut_freq/smartapi.yaml @@ -10,6 +10,7 @@ info: title: TCGA Mutation Frequency KP API version: '1.0' x-translator: + infores-curie: "infores:biothings-tcga-mut-freq" component: KP team: - Multiomics Provider @@ -392,7 +393,8 @@ components: predicate: condition_associated_with_gene response_mapping: $ref: '#/components/x-bte-response-mapping/disease-gene' - source: Multiomics Provider + ## note that this is a data source + source: "infores:tgca" supportBatch: false gene-disease: - inputs: @@ -410,7 +412,8 @@ components: predicate: gene_associated_with_condition response_mapping: $ref: '#/components/x-bte-response-mapping/gene-disease' - source: Multiomics Provider + ## note that this is a data source + source: "infores:tgca" supportBatch: false x-bte-response-mapping: disease-gene: diff --git a/text_mining/cooccurrence.yaml b/text_mining/cooccurrence.yaml index 8ce83bc6..a435ec76 100644 --- a/text_mining/cooccurrence.yaml +++ b/text_mining/cooccurrence.yaml @@ -10,6 +10,7 @@ info: title: Text Mining CO-OCCURRENCE API version: '1.0' x-translator: + infores-curie: "infores:text-mining-provider-cooccurrence" component: KP team: - Text Mining Provider @@ -679,7 +680,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-AnatomicalEntity-reverse: - inputs: @@ -695,7 +696,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-BiologicalProcess: - inputs: @@ -711,7 +712,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-BiologicalProcess-reverse: - inputs: @@ -727,7 +728,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Cell: - inputs: @@ -743,7 +744,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Cell-reverse: - inputs: @@ -759,7 +760,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-CellularComponent: - inputs: @@ -775,7 +776,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-CellularComponent-reverse: - inputs: @@ -791,7 +792,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-ChemicalSubstance: - inputs: @@ -807,7 +808,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-ChemicalSubstance-reverse: - inputs: @@ -823,7 +824,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Disease: - inputs: @@ -839,7 +840,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Disease-reverse: - inputs: @@ -855,7 +856,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Gene: - inputs: @@ -871,7 +872,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Gene-reverse: - inputs: @@ -887,7 +888,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-MolecularActivity: - inputs: @@ -903,7 +904,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-MolecularActivity-reverse: - inputs: @@ -919,7 +920,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-OrganismTaxon: - inputs: @@ -935,7 +936,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-OrganismTaxon-reverse: - inputs: @@ -951,7 +952,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-PhenotypicFeature: - inputs: @@ -967,7 +968,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-PhenotypicFeature-reverse: - inputs: @@ -983,7 +984,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Protein: - inputs: @@ -999,7 +1000,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-Protein-reverse: - inputs: @@ -1015,7 +1016,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-SequenceFeature: - inputs: @@ -1031,7 +1032,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false AnatomicalEntity-SequenceFeature-reverse: - inputs: @@ -1047,7 +1048,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-AnatomicalEntity: - inputs: @@ -1063,7 +1064,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-AnatomicalEntity-reverse: - inputs: @@ -1079,7 +1080,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-BiologicalProcess: - inputs: @@ -1095,7 +1096,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-BiologicalProcess-reverse: - inputs: @@ -1111,7 +1112,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Cell: - inputs: @@ -1127,7 +1128,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Cell-reverse: - inputs: @@ -1143,7 +1144,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-CellularComponent: - inputs: @@ -1159,7 +1160,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-CellularComponent-reverse: - inputs: @@ -1175,7 +1176,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-ChemicalSubstance: - inputs: @@ -1191,7 +1192,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-ChemicalSubstance-reverse: - inputs: @@ -1207,7 +1208,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Disease: - inputs: @@ -1223,7 +1224,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Disease-reverse: - inputs: @@ -1239,7 +1240,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Gene: - inputs: @@ -1255,7 +1256,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Gene-reverse: - inputs: @@ -1271,7 +1272,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-MolecularActivity: - inputs: @@ -1287,7 +1288,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-MolecularActivity-reverse: - inputs: @@ -1303,7 +1304,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-OrganismTaxon: - inputs: @@ -1319,7 +1320,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-OrganismTaxon-reverse: - inputs: @@ -1335,7 +1336,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-PhenotypicFeature: - inputs: @@ -1351,7 +1352,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-PhenotypicFeature-reverse: - inputs: @@ -1367,7 +1368,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Protein: - inputs: @@ -1383,7 +1384,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-Protein-reverse: - inputs: @@ -1399,7 +1400,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-SequenceFeature: - inputs: @@ -1415,7 +1416,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false BiologicalProcess-SequenceFeature-reverse: - inputs: @@ -1431,7 +1432,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-AnatomicalEntity: - inputs: @@ -1447,7 +1448,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-AnatomicalEntity-reverse: - inputs: @@ -1463,7 +1464,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-BiologicalProcess: - inputs: @@ -1479,7 +1480,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-BiologicalProcess-reverse: - inputs: @@ -1495,7 +1496,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Cell: - inputs: @@ -1511,7 +1512,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Cell-reverse: - inputs: @@ -1527,7 +1528,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-CellularComponent: - inputs: @@ -1543,7 +1544,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-CellularComponent-reverse: - inputs: @@ -1559,7 +1560,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-ChemicalSubstance: - inputs: @@ -1575,7 +1576,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-ChemicalSubstance-reverse: - inputs: @@ -1591,7 +1592,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Disease: - inputs: @@ -1607,7 +1608,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Disease-reverse: - inputs: @@ -1623,7 +1624,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Gene: - inputs: @@ -1639,7 +1640,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Gene-reverse: - inputs: @@ -1655,7 +1656,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-MolecularActivity: - inputs: @@ -1671,7 +1672,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-MolecularActivity-reverse: - inputs: @@ -1687,7 +1688,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-OrganismTaxon: - inputs: @@ -1703,7 +1704,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-OrganismTaxon-reverse: - inputs: @@ -1719,7 +1720,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-PhenotypicFeature: - inputs: @@ -1735,7 +1736,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-PhenotypicFeature-reverse: - inputs: @@ -1751,7 +1752,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Protein: - inputs: @@ -1767,7 +1768,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-Protein-reverse: - inputs: @@ -1783,7 +1784,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-SequenceFeature: - inputs: @@ -1799,7 +1800,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Cell-SequenceFeature-reverse: - inputs: @@ -1815,7 +1816,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-AnatomicalEntity: - inputs: @@ -1831,7 +1832,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-AnatomicalEntity-reverse: - inputs: @@ -1847,7 +1848,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-BiologicalProcess: - inputs: @@ -1863,7 +1864,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-BiologicalProcess-reverse: - inputs: @@ -1879,7 +1880,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Cell: - inputs: @@ -1895,7 +1896,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Cell-reverse: - inputs: @@ -1911,7 +1912,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-CellularComponent: - inputs: @@ -1927,7 +1928,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-CellularComponent-reverse: - inputs: @@ -1943,7 +1944,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-ChemicalSubstance: - inputs: @@ -1959,7 +1960,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-ChemicalSubstance-reverse: - inputs: @@ -1975,7 +1976,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Disease: - inputs: @@ -1991,7 +1992,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Disease-reverse: - inputs: @@ -2007,7 +2008,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Gene: - inputs: @@ -2023,7 +2024,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Gene-reverse: - inputs: @@ -2039,7 +2040,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-MolecularActivity: - inputs: @@ -2055,7 +2056,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-MolecularActivity-reverse: - inputs: @@ -2071,7 +2072,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-OrganismTaxon: - inputs: @@ -2087,7 +2088,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-OrganismTaxon-reverse: - inputs: @@ -2103,7 +2104,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-PhenotypicFeature: - inputs: @@ -2119,7 +2120,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-PhenotypicFeature-reverse: - inputs: @@ -2135,7 +2136,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Protein: - inputs: @@ -2151,7 +2152,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-Protein-reverse: - inputs: @@ -2167,7 +2168,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-SequenceFeature: - inputs: @@ -2183,7 +2184,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false CellularComponent-SequenceFeature-reverse: - inputs: @@ -2199,7 +2200,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-AnatomicalEntity: - inputs: @@ -2215,7 +2216,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-AnatomicalEntity-reverse: - inputs: @@ -2231,7 +2232,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-BiologicalProcess: - inputs: @@ -2247,7 +2248,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-BiologicalProcess-reverse: - inputs: @@ -2263,7 +2264,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Cell: - inputs: @@ -2279,7 +2280,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Cell-reverse: - inputs: @@ -2295,7 +2296,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-CellularComponent: - inputs: @@ -2311,7 +2312,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-CellularComponent-reverse: - inputs: @@ -2327,7 +2328,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-ChemicalSubstance: - inputs: @@ -2343,7 +2344,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-ChemicalSubstance-reverse: - inputs: @@ -2359,7 +2360,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Disease: - inputs: @@ -2375,7 +2376,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Disease-reverse: - inputs: @@ -2391,7 +2392,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Gene: - inputs: @@ -2407,7 +2408,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Gene-reverse: - inputs: @@ -2423,7 +2424,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-MolecularActivity: - inputs: @@ -2439,7 +2440,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-MolecularActivity-reverse: - inputs: @@ -2455,7 +2456,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-OrganismTaxon: - inputs: @@ -2471,7 +2472,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-OrganismTaxon-reverse: - inputs: @@ -2487,7 +2488,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-PhenotypicFeature: - inputs: @@ -2503,7 +2504,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-PhenotypicFeature-reverse: - inputs: @@ -2519,7 +2520,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Protein: - inputs: @@ -2535,7 +2536,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-Protein-reverse: - inputs: @@ -2551,7 +2552,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-SequenceFeature: - inputs: @@ -2567,7 +2568,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false ChemicalSubstance-SequenceFeature-reverse: - inputs: @@ -2583,7 +2584,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-AnatomicalEntity: - inputs: @@ -2599,7 +2600,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-AnatomicalEntity-reverse: - inputs: @@ -2615,7 +2616,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-BiologicalProcess: - inputs: @@ -2631,7 +2632,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-BiologicalProcess-reverse: - inputs: @@ -2647,7 +2648,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Cell: - inputs: @@ -2663,7 +2664,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Cell-reverse: - inputs: @@ -2679,7 +2680,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-CellularComponent: - inputs: @@ -2695,7 +2696,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-CellularComponent-reverse: - inputs: @@ -2711,7 +2712,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-ChemicalSubstance: - inputs: @@ -2727,7 +2728,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-ChemicalSubstance-reverse: - inputs: @@ -2743,7 +2744,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Disease: - inputs: @@ -2759,7 +2760,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Disease-reverse: - inputs: @@ -2775,7 +2776,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Gene: - inputs: @@ -2791,7 +2792,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Gene-reverse: - inputs: @@ -2807,7 +2808,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-MolecularActivity: - inputs: @@ -2823,7 +2824,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-MolecularActivity-reverse: - inputs: @@ -2839,7 +2840,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-OrganismTaxon: - inputs: @@ -2855,7 +2856,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-OrganismTaxon-reverse: - inputs: @@ -2871,7 +2872,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-PhenotypicFeature: - inputs: @@ -2887,7 +2888,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-PhenotypicFeature-reverse: - inputs: @@ -2903,7 +2904,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Protein: - inputs: @@ -2919,7 +2920,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-Protein-reverse: - inputs: @@ -2935,7 +2936,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-SequenceFeature: - inputs: @@ -2951,7 +2952,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Disease-SequenceFeature-reverse: - inputs: @@ -2967,7 +2968,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-AnatomicalEntity: - inputs: @@ -2983,7 +2984,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-AnatomicalEntity-reverse: - inputs: @@ -2999,7 +3000,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-BiologicalProcess: - inputs: @@ -3015,7 +3016,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-BiologicalProcess-reverse: - inputs: @@ -3031,7 +3032,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Cell: - inputs: @@ -3047,7 +3048,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Cell-reverse: - inputs: @@ -3063,7 +3064,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-CellularComponent: - inputs: @@ -3079,7 +3080,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-CellularComponent-reverse: - inputs: @@ -3095,7 +3096,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-ChemicalSubstance: - inputs: @@ -3111,7 +3112,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-ChemicalSubstance-reverse: - inputs: @@ -3127,7 +3128,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Disease: - inputs: @@ -3143,7 +3144,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Disease-reverse: - inputs: @@ -3159,7 +3160,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Gene: - inputs: @@ -3175,7 +3176,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Gene-reverse: - inputs: @@ -3191,7 +3192,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-MolecularActivity: - inputs: @@ -3207,7 +3208,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-MolecularActivity-reverse: - inputs: @@ -3223,7 +3224,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-OrganismTaxon: - inputs: @@ -3239,7 +3240,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-OrganismTaxon-reverse: - inputs: @@ -3255,7 +3256,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-PhenotypicFeature: - inputs: @@ -3271,7 +3272,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-PhenotypicFeature-reverse: - inputs: @@ -3287,7 +3288,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Protein: - inputs: @@ -3303,7 +3304,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-Protein-reverse: - inputs: @@ -3319,7 +3320,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-SequenceFeature: - inputs: @@ -3335,7 +3336,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Gene-SequenceFeature-reverse: - inputs: @@ -3351,7 +3352,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-AnatomicalEntity: - inputs: @@ -3367,7 +3368,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-AnatomicalEntity-reverse: - inputs: @@ -3383,7 +3384,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-BiologicalProcess: - inputs: @@ -3399,7 +3400,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-BiologicalProcess-reverse: - inputs: @@ -3415,7 +3416,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Cell: - inputs: @@ -3431,7 +3432,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Cell-reverse: - inputs: @@ -3447,7 +3448,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-CellularComponent: - inputs: @@ -3463,7 +3464,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-CellularComponent-reverse: - inputs: @@ -3479,7 +3480,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-ChemicalSubstance: - inputs: @@ -3495,7 +3496,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-ChemicalSubstance-reverse: - inputs: @@ -3511,7 +3512,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Disease: - inputs: @@ -3527,7 +3528,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Disease-reverse: - inputs: @@ -3543,7 +3544,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Gene: - inputs: @@ -3559,7 +3560,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Gene-reverse: - inputs: @@ -3575,7 +3576,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-MolecularActivity: - inputs: @@ -3591,7 +3592,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-MolecularActivity-reverse: - inputs: @@ -3607,7 +3608,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-OrganismTaxon: - inputs: @@ -3623,7 +3624,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-OrganismTaxon-reverse: - inputs: @@ -3639,7 +3640,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-PhenotypicFeature: - inputs: @@ -3655,7 +3656,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-PhenotypicFeature-reverse: - inputs: @@ -3671,7 +3672,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Protein: - inputs: @@ -3687,7 +3688,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-Protein-reverse: - inputs: @@ -3703,7 +3704,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-SequenceFeature: - inputs: @@ -3719,7 +3720,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false MolecularActivity-SequenceFeature-reverse: - inputs: @@ -3735,7 +3736,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-AnatomicalEntity: - inputs: @@ -3751,7 +3752,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-AnatomicalEntity-reverse: - inputs: @@ -3767,7 +3768,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-BiologicalProcess: - inputs: @@ -3783,7 +3784,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-BiologicalProcess-reverse: - inputs: @@ -3799,7 +3800,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Cell: - inputs: @@ -3815,7 +3816,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Cell-reverse: - inputs: @@ -3831,7 +3832,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-CellularComponent: - inputs: @@ -3847,7 +3848,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-CellularComponent-reverse: - inputs: @@ -3863,7 +3864,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-ChemicalSubstance: - inputs: @@ -3879,7 +3880,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-ChemicalSubstance-reverse: - inputs: @@ -3895,7 +3896,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Disease: - inputs: @@ -3911,7 +3912,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Disease-reverse: - inputs: @@ -3927,7 +3928,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Gene: - inputs: @@ -3943,7 +3944,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Gene-reverse: - inputs: @@ -3959,7 +3960,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-MolecularActivity: - inputs: @@ -3975,7 +3976,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-MolecularActivity-reverse: - inputs: @@ -3991,7 +3992,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-OrganismTaxon: - inputs: @@ -4007,7 +4008,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-OrganismTaxon-reverse: - inputs: @@ -4023,7 +4024,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-PhenotypicFeature: - inputs: @@ -4039,7 +4040,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-PhenotypicFeature-reverse: - inputs: @@ -4055,7 +4056,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Protein: - inputs: @@ -4071,7 +4072,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-Protein-reverse: - inputs: @@ -4087,7 +4088,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-SequenceFeature: - inputs: @@ -4103,7 +4104,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false OrganismTaxon-SequenceFeature-reverse: - inputs: @@ -4119,7 +4120,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-AnatomicalEntity: - inputs: @@ -4135,7 +4136,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-AnatomicalEntity-reverse: - inputs: @@ -4151,7 +4152,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-BiologicalProcess: - inputs: @@ -4167,7 +4168,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-BiologicalProcess-reverse: - inputs: @@ -4183,7 +4184,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Cell: - inputs: @@ -4199,7 +4200,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Cell-reverse: - inputs: @@ -4215,7 +4216,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-CellularComponent: - inputs: @@ -4231,7 +4232,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-CellularComponent-reverse: - inputs: @@ -4247,7 +4248,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-ChemicalSubstance: - inputs: @@ -4263,7 +4264,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-ChemicalSubstance-reverse: - inputs: @@ -4279,7 +4280,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Disease: - inputs: @@ -4295,7 +4296,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Disease-reverse: - inputs: @@ -4311,7 +4312,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Gene: - inputs: @@ -4327,7 +4328,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Gene-reverse: - inputs: @@ -4343,7 +4344,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-MolecularActivity: - inputs: @@ -4359,7 +4360,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-MolecularActivity-reverse: - inputs: @@ -4375,7 +4376,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-OrganismTaxon: - inputs: @@ -4391,7 +4392,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-OrganismTaxon-reverse: - inputs: @@ -4407,7 +4408,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-PhenotypicFeature: - inputs: @@ -4423,7 +4424,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-PhenotypicFeature-reverse: - inputs: @@ -4439,7 +4440,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Protein: - inputs: @@ -4455,7 +4456,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-Protein-reverse: - inputs: @@ -4471,7 +4472,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-SequenceFeature: - inputs: @@ -4487,7 +4488,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false PhenotypicFeature-SequenceFeature-reverse: - inputs: @@ -4503,7 +4504,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-AnatomicalEntity: - inputs: @@ -4519,7 +4520,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-AnatomicalEntity-reverse: - inputs: @@ -4535,7 +4536,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-BiologicalProcess: - inputs: @@ -4551,7 +4552,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-BiologicalProcess-reverse: - inputs: @@ -4567,7 +4568,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Cell: - inputs: @@ -4583,7 +4584,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Cell-reverse: - inputs: @@ -4599,7 +4600,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-CellularComponent: - inputs: @@ -4615,7 +4616,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-CellularComponent-reverse: - inputs: @@ -4631,7 +4632,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-ChemicalSubstance: - inputs: @@ -4647,7 +4648,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-ChemicalSubstance-reverse: - inputs: @@ -4663,7 +4664,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Disease: - inputs: @@ -4679,7 +4680,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Disease-reverse: - inputs: @@ -4695,7 +4696,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Gene: - inputs: @@ -4711,7 +4712,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Gene-reverse: - inputs: @@ -4727,7 +4728,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-MolecularActivity: - inputs: @@ -4743,7 +4744,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-MolecularActivity-reverse: - inputs: @@ -4759,7 +4760,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-OrganismTaxon: - inputs: @@ -4775,7 +4776,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-OrganismTaxon-reverse: - inputs: @@ -4791,7 +4792,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-PhenotypicFeature: - inputs: @@ -4807,7 +4808,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-PhenotypicFeature-reverse: - inputs: @@ -4823,7 +4824,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Protein: - inputs: @@ -4839,7 +4840,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-Protein-reverse: - inputs: @@ -4855,7 +4856,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-SequenceFeature: - inputs: @@ -4871,7 +4872,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false Protein-SequenceFeature-reverse: - inputs: @@ -4887,7 +4888,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-AnatomicalEntity: - inputs: @@ -4903,7 +4904,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-AnatomicalEntity-reverse: - inputs: @@ -4919,7 +4920,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/AnatomicalEntity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-BiologicalProcess: - inputs: @@ -4935,7 +4936,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-BiologicalProcess-reverse: - inputs: @@ -4951,7 +4952,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/BiologicalProcess-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Cell: - inputs: @@ -4967,7 +4968,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Cell-reverse: - inputs: @@ -4983,7 +4984,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Cell-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-CellularComponent: - inputs: @@ -4999,7 +5000,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-CellularComponent-reverse: - inputs: @@ -5015,7 +5016,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/CellularComponent-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-ChemicalSubstance: - inputs: @@ -5031,7 +5032,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-ChemicalSubstance-reverse: - inputs: @@ -5047,7 +5048,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/ChemicalSubstance-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Disease: - inputs: @@ -5063,7 +5064,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Disease-reverse: - inputs: @@ -5079,7 +5080,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Disease-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Gene: - inputs: @@ -5095,7 +5096,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Gene-reverse: - inputs: @@ -5111,7 +5112,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Gene-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-MolecularActivity: - inputs: @@ -5127,7 +5128,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-MolecularActivity-reverse: - inputs: @@ -5143,7 +5144,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/MolecularActivity-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-OrganismTaxon: - inputs: @@ -5159,7 +5160,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-OrganismTaxon-reverse: - inputs: @@ -5175,7 +5176,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/OrganismTaxon-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-PhenotypicFeature: - inputs: @@ -5191,7 +5192,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-PhenotypicFeature-reverse: - inputs: @@ -5207,7 +5208,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/PhenotypicFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Protein: - inputs: @@ -5223,7 +5224,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-Protein-reverse: - inputs: @@ -5239,7 +5240,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/Protein-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-SequenceFeature: - inputs: @@ -5255,7 +5256,7 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature' - source: Text Mining KP + # source: Text Mining KP supportBatch: false SequenceFeature-SequenceFeature-reverse: - inputs: @@ -5271,9 +5272,8 @@ components: predicate: related_to response_mapping: $ref: '#/components/x-bte-response-mapping/SequenceFeature-reverse' - source: Text Mining KP + # source: Text Mining KP supportBatch: false - x-bte-response-mapping: AnatomicalEntity: UBERON: hits.object.UBERON diff --git a/text_mining/smartapi.yaml b/text_mining/smartapi.yaml index 33f97f04..9e984372 100644 --- a/text_mining/smartapi.yaml +++ b/text_mining/smartapi.yaml @@ -10,6 +10,7 @@ info: title: Text Mining Targeted Association API version: '1.0' x-translator: + infores-curie: "infores:text-mining-provider-targeted" component: KP team: - Text Mining Provider @@ -394,7 +395,8 @@ components: predicate: entity_positively_regulates_entity response_mapping: $ref: '#/components/x-bte-response-mapping/chemical-protein' - source: Text Mining KP + ## note: source should be the source of data used + # source: Text Mining KP supportBatch: false chemical-protein-negative: - inputs: @@ -410,7 +412,8 @@ components: predicate: entity_negatively_regulates_entity response_mapping: $ref: '#/components/x-bte-response-mapping/chemical-protein' - source: Text Mining KP + ## note: source should be the source of data used + # source: Text Mining KP supportBatch: false protein-chemical-positive: - outputs: @@ -426,7 +429,8 @@ components: predicate: entity_positively_regulated_by_entity response_mapping: $ref: '#/components/x-bte-response-mapping/protein-chemical' - source: Text Mining KP + ## note: source should be the source of data used + # source: Text Mining KP supportBatch: false protein-chemical-negative: - outputs: @@ -442,7 +446,8 @@ components: predicate: entity_negatively_regulated_by_entity response_mapping: $ref: '#/components/x-bte-response-mapping/protein-chemical' - source: Text Mining KP + ## note: source should be the source of data used + # source: Text Mining KP supportBatch: false x-bte-response-mapping: chemical-protein: diff --git a/uberon/smartapi.yaml b/uberon/smartapi.yaml index 06c00743..801e5720 100644 --- a/uberon/smartapi.yaml +++ b/uberon/smartapi.yaml @@ -10,6 +10,7 @@ info: title: UBERON Ontology API version: '1.0' x-translator: + infores-curie: "infores:biothings-uberon-ontology" component: KP team: - Service Provider @@ -398,7 +399,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/has_subclass' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true subclass_of: - inputSeparator: ',' @@ -418,7 +419,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/subclass_of' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true part_of: - inputSeparator: ',' @@ -438,7 +439,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/part_of' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true has_part: - inputSeparator: ',' @@ -458,7 +459,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/has_part' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true produces: - inputSeparator: ',' @@ -478,7 +479,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/produces' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true produced_by: - inputSeparator: ',' @@ -498,7 +499,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/produced_by' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true located_in: - inputSeparator: ',' @@ -518,7 +519,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/located_in' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true location_of: - inputSeparator: ',' @@ -538,7 +539,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/location_of' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true develops_from: - inputSeparator: ',' @@ -558,7 +559,7 @@ components: header: application/x-www-form-urlencoded response_mapping: $ref: '#/components/x-bte-response-mapping/develops_from' - source: UBERON Ontology + source: "infores:uberon" supportBatch: true x-bte-response-mapping: has_subclass: