diff --git a/session_gems/lab/03-Pathway-visualization.ipynb b/session_gems/lab/03-Pathway-visualization.ipynb index 056e3ad..7fa2479 100644 --- a/session_gems/lab/03-Pathway-visualization.ipynb +++ b/session_gems/lab/03-Pathway-visualization.ipynb @@ -56,7 +56,8 @@ "metadata": {}, "outputs": [], "source": [ - "escher.Builder('e_coli_core.Core metabolism')" + "b = escher.Builder('e_coli_core.Core metabolism')\n", + "escher.Builder.save_html(b, filepath='data/Ecoli_core_03')" ] }, { @@ -72,9 +73,10 @@ "metadata": {}, "outputs": [], "source": [ - "escher.Builder('e_coli_core.Core metabolism',\n", + "b = escher.Builder('e_coli_core.Core metabolism',\n", " reaction_data={'PGK': 100},\n", - " metabolite_data={'ATP': 20})" + " metabolite_data={'ATP': 20})\n", + "escher.Builder.save_html(b, filepath='data/Ecoli_core_031')" ] }, {