From 94b3967ccf6dac165ae4e1df77c986e5cd00de5d Mon Sep 17 00:00:00 2001 From: Mahesh Binzer-Panchal Date: Wed, 8 Nov 2023 08:50:59 +0000 Subject: [PATCH] Update README with parameter descriptions --- subworkflows/functional_annotation/README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/subworkflows/functional_annotation/README.md b/subworkflows/functional_annotation/README.md index 77687f1c..134de191 100644 --- a/subworkflows/functional_annotation/README.md +++ b/subworkflows/functional_annotation/README.md @@ -51,6 +51,9 @@ nextflow run NBISweden/pipelines-nextflow \ - `outdir`: Path to the results folder. - `records_per_file`: Number of fasta records per file to distribute to blast and interproscan (default: 1000). - `codon_table`: (default: 1). + - `blast_db_fasta` : Path to blast protein database fasta. + - `merge_annotation_identifier`: The identifier to use for labeling genes (default: NBIS). + - `use_pcds`: If true, enables the pcds flag when merging annotation. ### Tool specific parameters