From 8e24fa3151a0eb7681a9c5a316cc092e747f440c Mon Sep 17 00:00:00 2001
From: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
Date: Thu, 28 Sep 2023 12:41:10 +0000
Subject: [PATCH] Patch blast/makeblastdb to use a meta map

---
 modules.json                                  |  3 ++-
 .../blast/makeblastdb/blast-makeblastdb.diff  | 20 +++++++++++++++++++
 modules/nf-core/blast/makeblastdb/main.nf     |  6 +++---
 3 files changed, 25 insertions(+), 4 deletions(-)
 create mode 100644 modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff

diff --git a/modules.json b/modules.json
index d0d4182..f032637 100644
--- a/modules.json
+++ b/modules.json
@@ -8,7 +8,8 @@
           "blast/makeblastdb": {
             "branch": "master",
             "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-            "installed_by": ["modules"]
+            "installed_by": ["modules"],
+            "patch": "modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff"
           },
           "busco": {
             "branch": "master",
diff --git a/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff b/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff
new file mode 100644
index 0000000..daacf20
--- /dev/null
+++ b/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff
@@ -0,0 +1,20 @@
+Changes in module 'nf-core/blast/makeblastdb'
+--- modules/nf-core/blast/makeblastdb/main.nf
++++ modules/nf-core/blast/makeblastdb/main.nf
+@@ -8,11 +8,11 @@
+         'biocontainers/blast:2.13.0--hf3cf87c_0' }"
+ 
+     input:
+-    path fasta
++    tuple val(meta), path(fasta)
+ 
+     output:
+-    path 'blast_db'     , emit: db
+-    path "versions.yml" , emit: versions
++    tuple val(meta), path('blast_db'), emit: db
++    path "versions.yml"              , emit: versions
+ 
+     when:
+     task.ext.when == null || task.ext.when
+
+************************************************************
diff --git a/modules/nf-core/blast/makeblastdb/main.nf b/modules/nf-core/blast/makeblastdb/main.nf
index f576361..93f8851 100644
--- a/modules/nf-core/blast/makeblastdb/main.nf
+++ b/modules/nf-core/blast/makeblastdb/main.nf
@@ -8,11 +8,11 @@ process BLAST_MAKEBLASTDB {
         'biocontainers/blast:2.13.0--hf3cf87c_0' }"
 
     input:
-    path fasta
+    tuple val(meta), path(fasta)
 
     output:
-    path 'blast_db'     , emit: db
-    path "versions.yml" , emit: versions
+    tuple val(meta), path('blast_db'), emit: db
+    path "versions.yml"              , emit: versions
 
     when:
     task.ext.when == null || task.ext.when