README.md

VRE

MuG Virtual Research Environment. MuG VRE is a web application aimed to allow MuG users to access MuG data and explore and exploit it together with its own data via a selection of tools and visualizers. It is written in PHP, HTML and Javascript.

URL

• https://vre.multiscalegenomics.eu/ : production web site - version 1.1
• https://dev.multiscalegenomics.eu/ : development web site - version 1.2

Code structure

• admin code related to admin users, for managing tools, users, resources, etc
• applib library for code invoked via AJAX
• assets layout code
• htmlib basic HTML templates
• phplib PHP libraries for managing Mongo db, SGE jobs, users, etc.
• errors HTML for error pages
• HTML related to each of the VRE seccions:
  • getdata upload files to VRE
  • help help and documentation section
  • helpdesk ticketing system submission
  • home VRE home
  • repository import data from VRE repositories
  • user user profile registry and modification
  • workspace user files management
• tools VRE tools. input forms and results preview
• visualizer VRE visualizers