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CHANGELOG.md

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Change Log

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project (attempts to) adhere to Semantic Versioning.

[0.5.4] - 2023-10-03

  • Handle .faa files from other programs besides prodigal

[0.5.3] - 2020-06-11

  • More parsing of | characters, and warnings when they're present

[0.5.2] - 2020-03-28

  • Remove redundencies in b6 when loading (keep the one with the lowest e-value)

[0.5.1] - 2020-03-25

  • Add "SkipGenes"

[0.5.0] - 2020-03-25

  • Add an "--update" option to tax_collector
  • Update the README a tiny bit
  • Change default to group rather than species

[0.4.3] - 2020-03-09

  • so dumb

[0.4.2] - 2020-03-09

  • change how functional_annotation.py works

[0.4.1] - 2020-03-09

  • fix dumb bug with wrong name of functional_annotation.py

[0.4.0] - 2020-03-09

  • tax_collector now correctly produces "tsv" files
  • added "functional_tax.py"; we'll see how it does

[0.3.0] - 2020-03-05

  • Allow tax_collector to accept an .stb file

[0.2.0] - 2020-03-04

  • Changes to the README to make it actually reflect what it can do
  • Updates to allow it to process files created using the diamond pipeline

[0.1.0] - 2017-06-07

Fixed

  • program "make_Tdb.py" works again (bug fix with regards to pandas merge update)
  • TaxIDs are now internally stored as floats in some places (when np.nan values can be there)
  • very minor documentation added

[0.0.3] - 2017-11-29

Added

  • program "make_Tdb.py" works again

[0.0.2] - 2017-11-27

Added

  • program "tax_collector.py" added to bin

[0.0.1] - 2017-11-07

Added

  • the beast is born