process_orig.sh

#!/bin/bash
#Usage: process.sh subjID datePath posFile

#set -x
subjID=$1
datePath=$2
posFile=$3
DsFiles=$(ls -d $datePath/*.ds | grep -v 'Noise')
logFile=$(ls $datePath/sessionLog*.txt)

#Find the date folder and update owner, group and access permissions
me=$(whoami)	
chown -R $me:$me $datePath
chmod -R 775 $datePath

#Move the selected pos file and SessionLog to each of the .ds folders
for f in $DsFiles
do
	# See if a pos file already exists
	pos=$(ls $f/*.pos)
	if [ -z "$pos" ]
	then    
		# if the pos file does not have a matching subject ID, 
		# then prepend the ID while copying		
		posName=$(echo $(basename $posFile))		
		if [[ $posName == ${subjID}_* ]] ; then		
			echo "copying $posFile to ${datePath}/$f"		
			cp $posFile $f
		else			
			echo "copying $posFile to ${datePath}/${f}/${subjID}_$posName"		
			cp $posFile ${f}/${subjID}_$posName
		fi
		
	else
		echo "$pos already exists" 
	fi

	# copy the SessionLog and prepend the ID	
	logName=$(echo $(basename $logFile))			
	echo "copying $logFile to ${f}/${subjID}_$logName"		
	cp -u $logFile ${f}/${subjID}_$logName
done

# copy the SessionLog and prepend the ID to the date folder	
logName=$(echo $(basename $logFile))			
echo "copying $logFile to ${datePath}/${subjID}_$logName"		
mv $logFile ${datePath}/${subjID}_$logName

#Move the selected picture files to the dataset folder (datePath)
for f in "$@"
do
	if [ -f "$f" ]&&[ "$posFile" != "$f" ]
	then
		fileName=$(echo $(basename $f))
		echo "copying $f to ${datePath}/${subjID}_$fileName"		
		cp $f ${datePath}/${subjID}_$fileName
	fi
done

#Check that all files have the subject ID
#extraFiles=$(ls -d $datePath/* | grep -v '.ds')
#for f in $extraFiles
#do
#	echo "$f"
#	fileName=$(echo $(basename $f))	
#	if [[ $fileName == ${subjID}_* ]] ; then
#		echo "$f has subject ID"
#	else
#		fileName=$(echo $(basename $f))
#		echo "copying $f to ${datePath}/${subjID}_$fileName"		
#		mv $f ${datePath}/${subjID}_$fileName
#	fi
#done

# rename the folder
#folderName=$(echo $(basename $datePath))
#pathName=$(echo $(dirname $datePath))
#mv $datePath ${pathName}/${folderName}_$subjID