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nperm = 20 S = c(1e1, 1e2, 1e3) N = c(1e3, 1e4, 1e5) times = array(NA, dim = c(length(S), length(N))) dimnames(times) = list(S, N) for(i in seq_along(S)) { for(j in seq_along(N)) { times[i, j] = system.time(replicate(nperm, spec_sample_curve( sim_thomas_community(S[i], N[j], 'lnorm'), method='rarefaction')))[1] / nperm } }
The above averages over 20 runs (nperm value) for a given S and N value. Probably its a good idea to test this for a different pattern as well.
nperm
The text was updated successfully, but these errors were encountered:
Hey thanks for you work on the package! I just saw this issue and wanted to recommend the great {bench} package with the function press.
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The above averages over 20 runs (
nperm
value) for a given S and N value. Probably its a good idea to test this for a different pattern as well.The text was updated successfully, but these errors were encountered: