diff --git a/requirements.in b/requirements.in index 04185443..e6284cc3 100644 --- a/requirements.in +++ b/requirements.in @@ -1,5 +1,5 @@ psycopg2 -django==1.11.7 +django==1.11.29 channels==2.1.2 djangorestframework==3.7.1 drf-writable-nested diff --git a/requirements.txt b/requirements.txt index 813c6d41..ef16efdf 100644 --- a/requirements.txt +++ b/requirements.txt @@ -4,44 +4,158 @@ # # pip-compile # +airspeed==0.5.4dev-20150515 # via pyneuroml +allensdk==0.14.5 # via neuronunit amqp==2.4.2 # via kombu +apipkg==1.5 # via execnet +argparse==1.4.0 # via pyneuroml, scoop asgiref==2.3.2 # via channels +asteval==0.9.18 # via lmfit async-timeout==3.0.1 # via asgiref -attrs==19.1.0 # via automat, twisted +attrs==19.1.0 # via automat, jsonschema, twisted autobahn==19.3.3 # via daphne automat==0.7.0 # via twisted +backcall==0.1.0 # via ipython +backports.tempfile==1.0 # via sciunit +backports.weakref==1.0.post1 # via backports.tempfile +beautifulsoup4==4.9.1 # via bs4 billiard==3.5.0.5 # via celery -celery[redis]==4.2.2 -channels==2.1.2 +bleach==3.1.5 # via nbconvert +git+https://github.com/russelljjarvis/BluePyOpt@scidash#egg=bluepyopt-9999 # via neuronunit +bokeh==2.0.2 # via dask +bs4==0.0.1 # via sciunit +cachetools==0.8.0 # via airspeed +celery[redis]==4.2.2 # via -r requirements.in, django-celery-beat, django-celery-results +cerberus==1.3.2 # via sciunit +certifi==2020.4.5.1 # via requests +channels==2.1.2 # via -r requirements.in +chardet==3.0.4 # via requests +click==7.1.2 # via distributed +cloudpickle==1.4.1 # via dask, distributed constantly==15.1.0 # via twisted +cycler==0.10.0 # via matplotlib +cypy==0.2.0 # via sciunit daphne==2.2.5 # via channels -django-celery-beat==1.4.0 -django-celery-results==1.0.4 -django-db-logger==0.1.7 -django-dotenv==1.4.2 -django-extensions==2.1.6 -django-filter==1.1.0 -django-material==1.5.2 +dask[complete]==2.17.2 # via distributed, neuronunit +deap==1.3.1 # via bluepyopt, neuronunit +decorator==4.4.2 # via ipyparallel, ipython, networkx, traitlets, validators +defusedxml==0.6.0 # via nbconvert +distributed==2.17.0 # via dask +django-celery-beat==1.4.0 # via -r requirements.in +django-celery-results==1.0.4 # via -r requirements.in +django-db-logger==0.1.7 # via -r requirements.in +django-dotenv==1.4.2 # via -r requirements.in +django-extensions==2.1.6 # via -r requirements.in +django-filter==1.1.0 # via -r requirements.in +django-material==1.5.2 # via -r requirements.in django-timezone-field==3.0 # via django-celery-beat -django==1.11.7 -djangorestframework-jwt==1.11.0 -djangorestframework==3.7.1 -drf-writable-nested==0.5.1 -git+git://github.com/ddelpiano/neuronunit@4.0.0#egg=neuronunit +django==1.11.29 # via -r requirements.in, channels, django-db-logger, django-timezone-field +djangorestframework-jwt==1.11.0 # via -r requirements.in +djangorestframework==3.7.1 # via -r requirements.in +drf-writable-nested==0.5.1 # via -r requirements.in +efel==3.1.39 # via bluepyopt +elephant==0.4.1 # via neuronunit +entrypoints==0.3 # via nbconvert +execnet==1.7.1 # via neuronunit +fsspec==0.7.4 # via dask +future==0.18.2 # via allensdk, bluepyopt +gitdb==4.0.5 # via gitpython +gitpython==3.1.3 # via sciunit +greenlet==0.4.16 # via scoop +h5py==2.10.0 # via allensdk +heapdict==1.0.1 # via zict hyperlink==18.0.0 # via twisted -idna==2.8 # via hyperlink +idna==2.8 # via hyperlink, requests +igor==0.3 # via neuronunit +imageio==2.8.0 # via scikit-image incremental==17.5.0 # via twisted +ipykernel==5.3.0 # via ipyparallel, sciunit +ipyparallel==6.3.0 # via bluepyopt +ipython-genutils==0.2.0 # via ipyparallel, nbformat, traitlets +ipython==7.15.0 # via ipykernel, ipyparallel, sciunit +jedi==0.17.0 # via ipython +jinja2==2.11.2 # via allensdk, bluepyopt, bokeh, nbconvert +jsonschema==3.2.0 # via nbformat +jupyter-client==6.1.3 # via ipykernel, ipyparallel +jupyter-core==4.6.3 # via jupyter-client, nbconvert, nbformat +kiwisolver==1.2.0 # via matplotlib kombu==4.3.0 # via celery -psycopg2==2.7.7 +lazyarray==0.3.3 # via pynn +libneuroml==0.2.50 # via pyneuroml +llvmlite==0.32.1 # via numba +lmfit==1.0.1 # via neuronunit +locket==0.2.0 # via partd +lxml==4.5.1 # via libneuroml, pyneuroml, sciunit +markupsafe==1.1.1 # via jinja2 +matplotlib==3.2.1 # via allensdk, neuronunit, pyneuroml, scikit-image, sciunit +mistune==0.8.4 # via nbconvert +msgpack==1.0.0 # via distributed +nbconvert==5.6.1 # via sciunit +nbformat==5.0.6 # via nbconvert, sciunit +neo==0.5.2 # via elephant, neuronunit, pynn +networkx==2.4 # via scikit-image +neuromllite==0.1.9 # via pyneuroml +git+git://github.com/ddelpiano/neuronunit@4.0.0#egg=neuronunit # via -r requirements.in +numba==0.49.1 # via neuronunit +numpy==1.18.5 # via allensdk, bluepyopt, bokeh, dask, deap, efel, elephant, h5py, imageio, lazyarray, lmfit, matplotlib, neo, numba, pandas, patsy, pynn, pynrrd, pywavelets, scikit-image, scipy, statsmodels, tifffile +packaging==20.4 # via bleach, bokeh +pandas==1.0.4 # via allensdk, bluepyopt, dask, sciunit, statsmodels +pandocfilters==1.4.2 # via nbconvert +parso==0.7.0 # via jedi +partd==1.1.0 # via dask +patsy==0.5.1 # via statsmodels +pexpect==4.8.0 # via ipython +pickleshare==0.7.5 # via bluepyopt, ipython +pillow==7.1.2 # via bokeh, imageio, scikit-image +prompt-toolkit==3.0.5 # via ipython +psutil==5.7.0 # via distributed +psycopg2==2.7.7 # via -r requirements.in +ptyprocess==0.6.0 # via pexpect +pygments==2.6.1 # via ipython, nbconvert pyhamcrest==1.9.0 # via twisted pyjwt==1.7.1 # via djangorestframework-jwt +pylems==0.4.9.3 # via pyneuroml +git+https://github.com/rgerkin/pyneuroml@master#egg=pyneuroml-9999 # via neuronunit +pynn==0.9.5 # via neuronunit +pynrrd==0.4.2 # via allensdk +pyparsing==2.4.7 # via matplotlib, packaging +pyrsistent==0.16.0 # via jsonschema python-crontab==2.3.6 # via django-celery-beat -python-dateutil==2.8.0 # via python-crontab -pytz==2018.9 # via celery, django, django-timezone-field +python-dateutil==2.8.0 # via bokeh, ipyparallel, jupyter-client, matplotlib, pandas, python-crontab +pytz==2018.9 # via celery, django, django-timezone-field, pandas +pywavelets==1.1.1 # via scikit-image +pyyaml==5.3.1 # via bokeh, dask, distributed +pyzmq==19.0.1 # via ipyparallel, jupyter-client, scoop +quantities==0.12.4 # via elephant, neo, pynn, sciunit redis==2.10.6 # via celery -rest-framework-cache==0.1 -six==1.12.0 # via autobahn, automat, django-extensions, pyhamcrest, python-dateutil, txaio +requests-toolbelt==0.9.1 # via allensdk +requests==2.23.0 # via allensdk, neuronunit, requests-toolbelt +rest-framework-cache==0.1 # via -r requirements.in +scikit-image==0.17.2 # via allensdk +scipy==1.4.1 # via allensdk, elephant, lmfit, neuronunit, scikit-image, statsmodels +git+https://github.com/scidash/sciunit@dev#egg=sciunit-9999 # via neuronunit +scoop==0.7.1.1 # via bluepyopt +simpleitk==1.2.4 # via allensdk +simplejson==3.17.0 # via allensdk +six==1.12.0 # via airspeed, allensdk, autobahn, automat, bleach, cycler, django-extensions, efel, elephant, h5py, jsonschema, libneuroml, packaging, patsy, pyhamcrest, python-dateutil, traitlets, txaio, validators +smmap==3.0.4 # via gitdb +sortedcontainers==2.1.0 # via distributed +soupsieve==2.0.1 # via beautifulsoup4 +statsmodels==0.11.1 # via allensdk +tblib==1.6.0 # via distributed +testpath==0.4.4 # via nbconvert +tifffile==2020.6.3 # via scikit-image +toolz==0.10.0 # via dask, distributed, partd +tornado==6.0.4 # via bokeh, distributed, ipykernel, ipyparallel, jupyter-client +traitlets==4.3.3 # via ipykernel, ipyparallel, ipython, jupyter-client, jupyter-core, nbconvert, nbformat twisted==18.9.0 # via daphne txaio==18.8.1 # via autobahn +typing-extensions==3.7.4.2 # via bokeh +uncertainties==3.1.2 # via lmfit +urllib3==1.25.9 # via requests +validators==0.15.0 # via neuronunit vine==1.3.0 # via amqp +wcwidth==0.2.3 # via prompt-toolkit +webencodings==0.5.1 # via bleach +zict==2.0.0 # via distributed zope.interface==4.6.0 # via twisted