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pyproject.toml
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pyproject.toml
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# Copyright 2020 Matthew Ralston
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
[build-system]
# pip
# conda 4.7.12
# wheel 0.43.0
# setuptools 61.3.1
# requires numpy and cython for custom cython correlation function
requires = ["setuptools>=69.2.0", "numpy>=1.21.2", "Cython>=3.0.8"]
build-backend = "setuptools.build_meta"
[project]
name = "kmerdb"
version = "0.8.10"
description = "Yet another correction to the 'yet another correction to just a k-mer counter...'"
readme = "README.md"
authors = [{name="Matt Ralston <[email protected]>", email="[email protected]"}]
license = { file = "LICENSE.txt" }
classifiers = [
"Development Status :: 1 - Planning",
"Development Status :: 2 - Pre-Alpha",
"Development Status :: 7 - Inactive",
"Environment :: Console",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3 :: Only",
"Operating System :: PalmOS",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Software Development :: Libraries :: Python Modules",
"Intended Audience :: Other Audience",
"License :: Free For Educational Use",
"License :: Free for non-commercial use",
"License :: OSI Approved :: Academic Free License (AFL)",
"License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)",
"Topic :: File Formats",
"Topic :: Games/Entertainment :: Puzzle Games",
"Topic :: Text Processing :: Indexing",
"Topic :: Text Processing",
"Operating System :: POSIX :: Linux",
]
#"Topic :: Software Development :: Assemblers"
keywords = ["bioinformatics", "fastq", "fasta", "k-mer", "kmer"]
dependencies = [
"numpy>=2.0.0",
"PyYAML>=6.0.1", # was before the influence
# jsonschema>=4.18.0a4
"jsonschema>=4.17.3", # what was going on here? inflection points. and ms tori
"psutil>=4.2.0", # not important, just as far as i was willing to go
"Cython>=3.0.8",
"biopython>=1.81",
"scipy>=1.11.4",
"scikit-learn==1.5.1",
"matplotlib>=3.5.3",
"pandas>=2.2.2",
"setuptools>=69.2.0",
]
#requires-python = ">=3.7.4"
requires-python = ">=3.12.2"
[project.optional-dependencies]
dev = [
#########################################
# Build system
#########################################
'auditwheel>=5.1.2',
'build>=0.9.0',
'coverage>=4.5.4',
'expects>=0.9.0',
# 'networkx'
# 'rypy2>=3.4.2'
# Vanity
#'ghstats>=1.2.0',
#########################################
# Documentation
#########################################
'docutils>=0.17',
#'grip>=4.6.2',
'sphinx>=8.0.2',
#'sphinx-autodoc',
# These are kind of developmental things, there really cant be testing around a 5% tested codebase, this is open source at its worse,
# and considering otherwise is toxic.
'pytest>=5.3.5',
#########################################
#
# Miss me with it
#########################################
'twine==4.0.1'
]
[tool.setuptools]
include-package-data = true
packages = ['kmerdb']
[tool.setuptools.package-data]
kmerdb = ["CITATION.txt"]
pyproject = ["pyproject.toml"]
[project.urls]
Homepage = "https://matthewralston.github.io/kmerdb"
QuickStart = "https://matthewralston.github.io/kmerdb/quickstart.html"
Github = "https://github.com/MatthewRalston/kmerdb"
Issues = "https://github.com/MatthewRalston/kmerdb/issues"
Projects = "https://github.com/MatthewRalston?tab=projects"
[project.scripts]
kmerdb = "kmerdb:cli"
#[options.entry_points]
#console_scripts = {kmerdb= "kmerdb:cli"}