From 967cd3ecc2cb31c879f0aa287d08f06f95b3a71e Mon Sep 17 00:00:00 2001 From: wulfdewolf Date: Sat, 30 Mar 2024 17:24:26 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20MattNola?= =?UTF-8?q?nLab/MattNolanLab.github.io@e369d5e138b1a5955166f242e8e9aebf246?= =?UTF-8?q?719d7=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- assets/jupyter/blog.ipynb.html | 2 +- blog/2015/code/index.html | 2 +- blog/2015/disqus-comments/index.html | 2 +- blog/2015/formatting-and-links/index.html | 2 +- blog/2015/images/index.html | 2 +- blog/2015/index.html | 2 +- blog/2015/math/index.html | 2 +- blog/2020/github-metadata/index.html | 2 +- blog/2020/index.html | 2 +- blog/2020/twitter/index.html | 2 +- blog/2021/diagrams/index.html | 2 +- blog/2021/distill/index.html | 2 +- blog/2021/index.html | 2 +- blog/2022/giscus-comments/index.html | 2 +- blog/2022/index.html | 2 +- blog/2022/redirect/index.html | 2 +- blog/2023/audios/index.html | 2 +- blog/2023/custom-blockquotes/index.html | 2 +- blog/2023/index.html | 2 +- blog/2023/jupyter-notebook/index.html | 2 +- blog/2023/post-bibliography/index.html | 2 +- blog/2023/sidebar-table-of-contents/index.html | 2 +- blog/2023/table-of-contents/index.html | 2 +- blog/2023/tables/index.html | 2 +- blog/2023/tikzjax/index.html | 2 +- blog/2023/videos/index.html | 2 +- blog/2024/advanced-images/index.html | 2 +- blog/2024/chartjs/index.html | 2 +- blog/2024/code-diff/index.html | 2 +- blog/2024/echarts/index.html | 2 +- blog/2024/geojson-map/index.html | 2 +- blog/2024/index.html | 2 +- blog/2024/vega-lite/index.html | 2 +- blog/category/external-services/index.html | 2 +- blog/category/sample-posts/index.html | 2 +- blog/tag/audios/index.html | 2 +- blog/tag/bib/index.html | 2 +- blog/tag/blockquotes/index.html | 2 +- blog/tag/charts/index.html | 2 +- blog/tag/code/index.html | 2 +- blog/tag/comments/index.html | 2 +- blog/tag/diagrams/index.html | 2 +- blog/tag/distill/index.html | 2 +- blog/tag/formatting/index.html | 2 +- blog/tag/images/index.html | 2 +- blog/tag/jupyter/index.html | 2 +- blog/tag/links/index.html | 2 +- blog/tag/maps/index.html | 2 +- blog/tag/math/index.html | 2 +- blog/tag/metadata/index.html | 2 +- blog/tag/sidebar/index.html | 2 +- blog/tag/tables/index.html | 2 +- blog/tag/toc/index.html | 2 +- blog/tag/videos/index.html | 2 +- data-and-code/index.html | 2 +- feed.xml | 2 +- index.html | 2 +- lab-manual/index.html | 2 +- news/HarryPaper/index.html | 2 +- news/announcement_1/index.html | 2 +- news/index.html | 2 +- nolan-lab/index.html | 2 +- projects/spatial_memory/index.html | 2 +- publications/index.html | 2 +- research/index.html | 2 +- sitemap.xml | 2 +- surmeli-lab/index.html | 2 +- 68 files changed, 68 insertions(+), 68 deletions(-) diff --git a/404.html b/404.html index 057ce5343423..d39eae5fa0c4 100644 --- a/404.html +++ b/404.html @@ -1 +1 @@ - Page not found | Nolan & Sürmeli Lab

Page not found

Looks like there has been a mistake. Nothing exists here.

You will be redirected to the main page within 3 seconds. If not redirected, please go back to the home page.

\ No newline at end of file + Page not found | Nolan & Sürmeli Labs

Page not found

Looks like there has been a mistake. Nothing exists here.

You will be redirected to the main page within 3 seconds. If not redirected, please go back to the home page.

\ No newline at end of file diff --git a/assets/jupyter/blog.ipynb.html b/assets/jupyter/blog.ipynb.html index 58ae0587b882..b92007c3e8b4 100644 --- a/assets/jupyter/blog.ipynb.html +++ b/assets/jupyter/blog.ipynb.html @@ -1,4 +1,4 @@ - jekyll-jupyter-notebook20240330-1879-1dj0sr \ No newline at end of file + a post with disqus comments | Nolan & Sürmeli Labs

a post with disqus comments

This post shows how to add DISQUS comments.

\ No newline at end of file diff --git a/blog/2015/formatting-and-links/index.html b/blog/2015/formatting-and-links/index.html index 97c05a9da7bd..ddc792b7c964 100644 --- a/blog/2015/formatting-and-links/index.html +++ b/blog/2015/formatting-and-links/index.html @@ -1 +1 @@ - a post with formatting and links | Nolan & Sürmeli Lab

a post with formatting and links

Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

Hipster list

  • brunch
  • fixie
  • raybans
  • messenger bag

Hoodie Thundercats retro, tote bag 8-bit Godard craft beer gastropub. Truffaut Tumblr taxidermy, raw denim Kickstarter sartorial dreamcatcher. Quinoa chambray slow-carb salvia readymade, bicycle rights 90’s yr typewriter selfies letterpress cardigan vegan.


Pug heirloom High Life vinyl swag, single-origin coffee four dollar toast taxidermy reprehenderit fap distillery master cleanse locavore. Est anim sapiente leggings Brooklyn ea. Thundercats locavore excepteur veniam eiusmod. Raw denim Truffaut Schlitz, migas sapiente Portland VHS twee Bushwick Marfa typewriter retro id keytar.

We do not grow absolutely, chronologically. We grow sometimes in one dimension, and not in another, unevenly. We grow partially. We are relative. We are mature in one realm, childish in another. —Anais Nin

Fap aliqua qui, scenester pug Echo Park polaroid irony shabby chic ex cardigan church-key Odd Future accusamus. Blog stumptown sartorial squid, gastropub duis aesthetic Truffaut vero. Pinterest tilde twee, odio mumblecore jean shorts lumbersexual.




    Enjoy Reading This Article?

    Here are some more articles you might like to read next:

  • a post with table of contents
  • a post with table of contents on a sidebar
  • a distill-style blog post
  • a post with redirect
  • displaying beautiful tables with Bootstrap Tables
  • \ No newline at end of file + a post with formatting and links | Nolan & Sürmeli Labs

    a post with formatting and links

    Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

    Hipster list

    • brunch
    • fixie
    • raybans
    • messenger bag

    Hoodie Thundercats retro, tote bag 8-bit Godard craft beer gastropub. Truffaut Tumblr taxidermy, raw denim Kickstarter sartorial dreamcatcher. Quinoa chambray slow-carb salvia readymade, bicycle rights 90’s yr typewriter selfies letterpress cardigan vegan.


    Pug heirloom High Life vinyl swag, single-origin coffee four dollar toast taxidermy reprehenderit fap distillery master cleanse locavore. Est anim sapiente leggings Brooklyn ea. Thundercats locavore excepteur veniam eiusmod. Raw denim Truffaut Schlitz, migas sapiente Portland VHS twee Bushwick Marfa typewriter retro id keytar.

    We do not grow absolutely, chronologically. We grow sometimes in one dimension, and not in another, unevenly. We grow partially. We are relative. We are mature in one realm, childish in another. —Anais Nin

    Fap aliqua qui, scenester pug Echo Park polaroid irony shabby chic ex cardigan church-key Odd Future accusamus. Blog stumptown sartorial squid, gastropub duis aesthetic Truffaut vero. Pinterest tilde twee, odio mumblecore jean shorts lumbersexual.




      Enjoy Reading This Article?

      Here are some more articles you might like to read next:

    • a post with table of contents
    • a post with table of contents on a sidebar
    • a distill-style blog post
    • a post with redirect
    • displaying beautiful tables with Bootstrap Tables
    • \ No newline at end of file diff --git a/blog/2015/images/index.html b/blog/2015/images/index.html index 5e7f6c86a0b5..5caf4fd96103 100644 --- a/blog/2015/images/index.html +++ b/blog/2015/images/index.html @@ -1 +1 @@ - a post with images | Nolan & Sürmeli Lab

      a post with images

      This is an example post with image galleries.

      A simple, elegant caption looks good between image rows, after each row, or doesn't have to be there at all.

      Images can be made zoomable. Simply add data-zoomable to <img> tags that you want to make zoomable.

      The rest of the images in this post are all zoomable, arranged into different mini-galleries.




        Enjoy Reading This Article?

        Here are some more articles you might like to read next:

      • a post with videos
      • a post with advanced image components
      • a post with audios
      • a distill-style blog post
      • a post with disqus comments
      • \ No newline at end of file + a post with images | Nolan & Sürmeli Labs

        a post with images

        This is an example post with image galleries.

        A simple, elegant caption looks good between image rows, after each row, or doesn't have to be there at all.

        Images can be made zoomable. Simply add data-zoomable to <img> tags that you want to make zoomable.

        The rest of the images in this post are all zoomable, arranged into different mini-galleries.




          Enjoy Reading This Article?

          Here are some more articles you might like to read next:

        • a post with videos
        • a post with advanced image components
        • a post with audios
        • a distill-style blog post
        • a post with disqus comments
        • \ No newline at end of file diff --git a/blog/2015/index.html b/blog/2015/index.html index 47898a46b1fb..92741a97d0dc 100644 --- a/blog/2015/index.html +++ b/blog/2015/index.html @@ -1 +1 @@ - 2015 | Nolan & Sürmeli Lab

          2015

          an archive of posts from this year

          \ No newline at end of file + 2015 | Nolan & Sürmeli Labs

          2015

          an archive of posts from this year

          \ No newline at end of file diff --git a/blog/2015/math/index.html b/blog/2015/math/index.html index 6b3458f097dd..bec59e55d540 100644 --- a/blog/2015/math/index.html +++ b/blog/2015/math/index.html @@ -1 +1 @@ - a post with math | Nolan & Sürmeli Lab

          a post with math

          This theme supports rendering beautiful math in inline and display modes using MathJax 3 engine. You just need to surround your math expression with $$, like $$ E = mc^2 $$. If you leave it inside a paragraph, it will produce an inline expression, just like \(E = mc^2\).

          To use display mode, again surround your expression with $$ and place it as a separate paragraph. Here is an example:

          \[\sum_{k=1}^\infty |\langle x, e_k \rangle|^2 \leq \|x\|^2\]

          You can also use \begin{equation}...\end{equation} instead of $$ for display mode math. MathJax will automatically number equations:

          \begin{equation} \label{eq:cauchy-schwarz} \left( \sum{k=1}^n a_k b_k \right)^2 \leq \left( \sum{k=1}^n ak^2 \right) \left( \sum{k=1}^n b_k^2 \right) \end{equation}

          and by adding \label{...} inside the equation environment, we can now refer to the equation using \eqref.

          Note that MathJax 3 is a major re-write of MathJax that brought a significant improvement to the loading and rendering speed, which is now on par with KaTeX.

          \ No newline at end of file + a post with math | Nolan & Sürmeli Labs

          a post with math

          This theme supports rendering beautiful math in inline and display modes using MathJax 3 engine. You just need to surround your math expression with $$, like $$ E = mc^2 $$. If you leave it inside a paragraph, it will produce an inline expression, just like \(E = mc^2\).

          To use display mode, again surround your expression with $$ and place it as a separate paragraph. Here is an example:

          \[\sum_{k=1}^\infty |\langle x, e_k \rangle|^2 \leq \|x\|^2\]

          You can also use \begin{equation}...\end{equation} instead of $$ for display mode math. MathJax will automatically number equations:

          \begin{equation} \label{eq:cauchy-schwarz} \left( \sum{k=1}^n a_k b_k \right)^2 \leq \left( \sum{k=1}^n ak^2 \right) \left( \sum{k=1}^n b_k^2 \right) \end{equation}

          and by adding \label{...} inside the equation environment, we can now refer to the equation using \eqref.

          Note that MathJax 3 is a major re-write of MathJax that brought a significant improvement to the loading and rendering speed, which is now on par with KaTeX.

          \ No newline at end of file diff --git a/blog/2020/github-metadata/index.html b/blog/2020/github-metadata/index.html index 00863f01aa57..c0bac34032e9 100644 --- a/blog/2020/github-metadata/index.html +++ b/blog/2020/github-metadata/index.html @@ -1 +1 @@ - a post with github metadata | Nolan & Sürmeli Lab

          a post with github metadata

          A sample blog page that demonstrates the accessing of github meta data.

          What does Github-MetaData do?

          • Propagates the site.github namespace with repository metadata
          • Setting site variables :
            • site.title
            • site.description
            • site.url
            • site.baseurl
          • Accessing the metadata - duh.
          • Generating edittable links.

          Additional Reading

          • If you’re recieving incorrect/missing data, you may need to perform a Github API authentication.
          • Go through this README for more details on the topic.
          • This page highlights all the feilds you can access with github-metadata.

          Example MetaData

          • Host Name :
          • URL :
          • BaseURL :
          • Archived :
          • Contributors :



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          • \ No newline at end of file + a post with github metadata | Nolan & Sürmeli Labs

            a post with github metadata

            A sample blog page that demonstrates the accessing of github meta data.

            What does Github-MetaData do?

            • Propagates the site.github namespace with repository metadata
            • Setting site variables :
              • site.title
              • site.description
              • site.url
              • site.baseurl
            • Accessing the metadata - duh.
            • Generating edittable links.

            Additional Reading

            • If you’re recieving incorrect/missing data, you may need to perform a Github API authentication.
            • Go through this README for more details on the topic.
            • This page highlights all the feilds you can access with github-metadata.

            Example MetaData

            • Host Name :
            • URL :
            • BaseURL :
            • Archived :
            • Contributors :



              Enjoy Reading This Article?

              Here are some more articles you might like to read next:

            • a post with twitter
            • a distill-style blog post
            • a post with code
            • a post with echarts
            • a post with code diff
            • \ No newline at end of file diff --git a/blog/2020/index.html b/blog/2020/index.html index 5fa1a1db6f7b..4c460cf5d85b 100644 --- a/blog/2020/index.html +++ b/blog/2020/index.html @@ -1 +1 @@ - 2020 | Nolan & Sürmeli Lab

              2020

              an archive of posts from this year

              \ No newline at end of file + 2020 | Nolan & Sürmeli Labs

              2020

              an archive of posts from this year

              \ No newline at end of file diff --git a/blog/2020/twitter/index.html b/blog/2020/twitter/index.html index afff809564ca..b638b39f2ed9 100644 --- a/blog/2020/twitter/index.html +++ b/blog/2020/twitter/index.html @@ -1 +1 @@ - a post with twitter | Nolan & Sürmeli Lab

              a post with twitter

              A sample blog page that demonstrates the inclusion of Tweets/Timelines/etc.

              Tweet

              An example of displaying a tweet:

              Timeline

              An example of pulling from a timeline:

              Additional Details

              For more details on using the plugin visit: jekyll-twitter-plugin




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                Here are some more articles you might like to read next:

              • a post with github metadata
              • a distill-style blog post
              • a post with advanced image components
              • displaying beautiful tables with Bootstrap Tables
              • a post with code
              • \ No newline at end of file + a post with twitter | Nolan & Sürmeli Labs

                a post with twitter

                A sample blog page that demonstrates the inclusion of Tweets/Timelines/etc.

                Tweet

                An example of displaying a tweet:

                Timeline

                An example of pulling from a timeline:

                Additional Details

                For more details on using the plugin visit: jekyll-twitter-plugin




                  Enjoy Reading This Article?

                  Here are some more articles you might like to read next:

                • a post with github metadata
                • a distill-style blog post
                • a post with advanced image components
                • displaying beautiful tables with Bootstrap Tables
                • a post with code
                • \ No newline at end of file diff --git a/blog/2021/diagrams/index.html b/blog/2021/diagrams/index.html index c8896b6c353b..451efb4cead8 100644 --- a/blog/2021/diagrams/index.html +++ b/blog/2021/diagrams/index.html @@ -1,4 +1,4 @@ - a post with diagrams | Nolan & Sürmeli Lab

                  a post with diagrams

                  This theme supports generating various diagrams from a text description using mermaid. Previously, this was done using the jekyll-diagrams plugin. For more information on this matter, see the related issue. To disable the zooming feature, set mermaid.zoomable to false in this post frontmatter.

                  Mermaid

                  The diagram below was generated by the following code:

                  ```mermaid
                  +        a post with diagrams | Nolan & Sürmeli Labs               

                  a post with diagrams

                  This theme supports generating various diagrams from a text description using mermaid. Previously, this was done using the jekyll-diagrams plugin. For more information on this matter, see the related issue. To disable the zooming feature, set mermaid.zoomable to false in this post frontmatter.

                  Mermaid

                  The diagram below was generated by the following code:

                  ```mermaid
                   sequenceDiagram
                       participant John
                       participant Alice
                  diff --git a/blog/2021/distill/index.html b/blog/2021/distill/index.html
                  index a954d7aeff6b..85ab197717f8 100644
                  --- a/blog/2021/distill/index.html
                  +++ b/blog/2021/distill/index.html
                  @@ -1,4 +1,4 @@
                  -        a distill-style blog post | Nolan & Sürmeli Lab                                         

                  2021

                  an archive of posts from this year

                  \ No newline at end of file + 2021 | Nolan & Sürmeli Labs

                  2021

                  an archive of posts from this year

                  \ No newline at end of file diff --git a/blog/2022/giscus-comments/index.html b/blog/2022/giscus-comments/index.html index 0ed0a14a911a..20a23ece8324 100644 --- a/blog/2022/giscus-comments/index.html +++ b/blog/2022/giscus-comments/index.html @@ -1 +1 @@ - a post with giscus comments | Nolan & Sürmeli Lab

                  a post with giscus comments

                  This post shows how to add GISCUS comments.

                  \ No newline at end of file + a post with giscus comments | Nolan & Sürmeli Labs

                  a post with giscus comments

                  This post shows how to add GISCUS comments.

                  \ No newline at end of file diff --git a/blog/2022/index.html b/blog/2022/index.html index 0f556e97d200..be338306daab 100644 --- a/blog/2022/index.html +++ b/blog/2022/index.html @@ -1 +1 @@ - 2022 | Nolan & Sürmeli Lab

                  2022

                  an archive of posts from this year

                  \ No newline at end of file + 2022 | Nolan & Sürmeli Labs

                  2022

                  an archive of posts from this year

                  \ No newline at end of file diff --git a/blog/2022/redirect/index.html b/blog/2022/redirect/index.html index 81c8bdb5ae03..5e612ba0fcd6 100644 --- a/blog/2022/redirect/index.html +++ b/blog/2022/redirect/index.html @@ -1 +1 @@ - a post with redirect | Nolan & Sürmeli Lab

                  a post with redirect

                  Redirecting to another page.




                    Enjoy Reading This Article?

                    Here are some more articles you might like to read next:

                  • a post with github metadata
                  • a post with jupyter notebook
                  • a post with formatting and links
                  • a post with echarts
                  • a post with table of contents
                  • \ No newline at end of file + a post with redirect | Nolan & Sürmeli Labs

                    a post with redirect

                    Redirecting to another page.




                      Enjoy Reading This Article?

                      Here are some more articles you might like to read next:

                    • a post with github metadata
                    • a post with jupyter notebook
                    • a post with formatting and links
                    • a post with echarts
                    • a post with table of contents
                    • \ No newline at end of file diff --git a/blog/2023/audios/index.html b/blog/2023/audios/index.html index 77b74bc3c3b6..471230584e54 100644 --- a/blog/2023/audios/index.html +++ b/blog/2023/audios/index.html @@ -1 +1 @@ - a post with audios | Nolan & Sürmeli Lab

                      a post with audios

                      This is an example post with audios. It supports local audio files.

                      A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all.



                        Enjoy Reading This Article?

                        Here are some more articles you might like to read next:

                      • a post with videos
                      • a post with images
                      • a distill-style blog post
                      • a post with jupyter notebook
                      • a post with advanced image components
                      • \ No newline at end of file + a post with audios | Nolan & Sürmeli Labs

                        a post with audios

                        This is an example post with audios. It supports local audio files.

                        A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all.



                          Enjoy Reading This Article?

                          Here are some more articles you might like to read next:

                        • a post with videos
                        • a post with images
                        • a distill-style blog post
                        • a post with jupyter notebook
                        • a post with advanced image components
                        • \ No newline at end of file diff --git a/blog/2023/custom-blockquotes/index.html b/blog/2023/custom-blockquotes/index.html index 93e7ef8d5590..145af68ba5e0 100644 --- a/blog/2023/custom-blockquotes/index.html +++ b/blog/2023/custom-blockquotes/index.html @@ -1,4 +1,4 @@ - a post with custom blockquotes | Nolan & Sürmeli Lab

                          a post with custom blockquotes

                          This post shows how to add custom styles for blockquotes. Based on jekyll-gitbook implementation.

                          We decided to support the same custom blockquotes as in jekyll-gitbook, which are also found in a lot of other sites’ styles. The styles definitions can be found on the _base.scss file, more specifically:

                          /* Tips, warnings, and dangers */
                          +        a post with custom blockquotes | Nolan & Sürmeli Labs               

                          a post with custom blockquotes

                          This post shows how to add custom styles for blockquotes. Based on jekyll-gitbook implementation.

                          We decided to support the same custom blockquotes as in jekyll-gitbook, which are also found in a lot of other sites’ styles. The styles definitions can be found on the _base.scss file, more specifically:

                          /* Tips, warnings, and dangers */
                           .post .post-content blockquote {
                             &.block-tip {
                               border-color: var(--global-tip-block);
                          diff --git a/blog/2023/index.html b/blog/2023/index.html
                          index 316a76a15fb5..ade4a4c8df2e 100644
                          --- a/blog/2023/index.html
                          +++ b/blog/2023/index.html
                          @@ -1 +1 @@
                          -        2023 | Nolan & Sürmeli Lab               
                          \ No newline at end of file + 2023 | Nolan & Sürmeli Labs
                          \ No newline at end of file diff --git a/blog/2023/jupyter-notebook/index.html b/blog/2023/jupyter-notebook/index.html index e18f080a6342..2936e8b88ce6 100644 --- a/blog/2023/jupyter-notebook/index.html +++ b/blog/2023/jupyter-notebook/index.html @@ -1,4 +1,4 @@ - a post with jupyter notebook | Nolan & Sürmeli Lab

                          a post with jupyter notebook

                          To include a jupyter notebook in a post, you can use the following code:

                          {::nomarkdown}
                          +        a post with jupyter notebook | Nolan & Sürmeli Labs               

                          a post with jupyter notebook

                          To include a jupyter notebook in a post, you can use the following code:

                          {::nomarkdown}
                           {% assign jupyter_path = 'assets/jupyter/blog.ipynb' | relative_url %}
                           {% capture notebook_exists %}{% file_exists assets/jupyter/blog.ipynb %}{% endcapture %}
                           {% if notebook_exists == 'true' %}
                          diff --git a/blog/2023/post-bibliography/index.html b/blog/2023/post-bibliography/index.html
                          index 076d6fc08c8f..20aa7245f321 100644
                          --- a/blog/2023/post-bibliography/index.html
                          +++ b/blog/2023/post-bibliography/index.html
                          @@ -1 +1 @@
                          -        a post with bibliography | Nolan & Sürmeli Lab               

                          a post with bibliography

                          This post shows how to add bibliography to simple blog posts. We support every citation style that jekyll-scholar does. That means simple citation like (missing reference), multiple citations like (missing reference), long references like (missing reference) or also quotes:

                          Lorem ipsum dolor sit amet, consectetur adipisicing elit,
                          sed do eiusmod tempor.

                          Lorem ipsum dolor sit amet, consectetur adipisicing.

                          (missing reference)

                          If you would like something more academic, check the distill style post.

                          References

                          \ No newline at end of file + a post with bibliography | Nolan & Sürmeli Labs

                          a post with bibliography

                          This post shows how to add bibliography to simple blog posts. We support every citation style that jekyll-scholar does. That means simple citation like (missing reference), multiple citations like (missing reference), long references like (missing reference) or also quotes:

                          Lorem ipsum dolor sit amet, consectetur adipisicing elit,
                          sed do eiusmod tempor.

                          Lorem ipsum dolor sit amet, consectetur adipisicing.

                          (missing reference)

                          If you would like something more academic, check the distill style post.

                          References

                          \ No newline at end of file diff --git a/blog/2023/sidebar-table-of-contents/index.html b/blog/2023/sidebar-table-of-contents/index.html index 94caa1166d17..0f29098b1a73 100644 --- a/blog/2023/sidebar-table-of-contents/index.html +++ b/blog/2023/sidebar-table-of-contents/index.html @@ -1,3 +1,3 @@ - a post with table of contents on a sidebar | Nolan & Sürmeli Lab

                          a post with table of contents on a sidebar

                          This post shows how to add a table of contents as a sidebar.

                          Adding a Table of Contents

                          To add a table of contents to a post as a sidebar, simply add

                          toc:
                          +        a post with table of contents on a sidebar | Nolan & Sürmeli Labs                

                          a post with table of contents on a sidebar

                          This post shows how to add a table of contents as a sidebar.

                          Adding a Table of Contents

                          To add a table of contents to a post as a sidebar, simply add

                          toc:
                             sidebar: left
                           

                          to the front matter of the post. The table of contents will be automatically generated from the headings in the post. If you wish to display the sidebar to the right, simply change left to right.

                          Example of Sub-Heading 1

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          Example of another Sub-Heading 1

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          Customizing Your Table of Contents

                          If you want to learn more about how to customize the table of contents of your sidebar, you can check the bootstrap-toc documentation. Notice that you can even customize the text of the heading that will be displayed on the sidebar.

                          Example of Sub-Heading 2

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          Example of another Sub-Heading 2

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          \ No newline at end of file diff --git a/blog/2023/table-of-contents/index.html b/blog/2023/table-of-contents/index.html index 2ed352ec0acc..4d1f5396148e 100644 --- a/blog/2023/table-of-contents/index.html +++ b/blog/2023/table-of-contents/index.html @@ -1,3 +1,3 @@ - a post with table of contents | Nolan & Sürmeli Lab

                          a post with table of contents


                          This post shows how to add a table of contents in the beginning of the post.

                          Adding a Table of Contents

                          To add a table of contents to a post, simply add

                          toc:
                          +        a post with table of contents | Nolan & Sürmeli Labs               

                          a post with table of contents


                          This post shows how to add a table of contents in the beginning of the post.

                          Adding a Table of Contents

                          To add a table of contents to a post, simply add

                          toc:
                             beginning: true
                           

                          to the front matter of the post. The table of contents will be automatically generated from the headings in the post.

                          Example of Sub-Heading 1

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          Example of another Sub-Heading 1

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          Table of Contents Options

                          If you want to learn more about how to customize the table of contents, you can check the jekyll-toc repository.

                          Example of Sub-Heading 2

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          Example of another Sub-Heading 2

                          Jean shorts raw denim Vice normcore, art party High Life PBR skateboard stumptown vinyl kitsch. Four loko meh 8-bit, tousled banh mi tilde forage Schlitz dreamcatcher twee 3 wolf moon. Chambray asymmetrical paleo salvia, sartorial umami four loko master cleanse drinking vinegar brunch. Pinterest DIY authentic Schlitz, hoodie Intelligentsia butcher trust fund brunch shabby chic Kickstarter forage flexitarian. Direct trade cold-pressed meggings stumptown plaid, pop-up taxidermy. Hoodie XOXO fingerstache scenester Echo Park. Plaid ugh Wes Anderson, freegan pug selvage fanny pack leggings pickled food truck DIY irony Banksy.

                          \ No newline at end of file diff --git a/blog/2023/tables/index.html b/blog/2023/tables/index.html index 217602a10e3d..c72b133fa177 100644 --- a/blog/2023/tables/index.html +++ b/blog/2023/tables/index.html @@ -1,4 +1,4 @@ - displaying beautiful tables with Bootstrap Tables | Nolan & Sürmeli Lab

                          displaying beautiful tables with Bootstrap Tables

                          Using markdown to display tables is easy. Just use the following syntax:

                          | Left aligned | Center aligned | Right aligned |
                          +        displaying beautiful tables with Bootstrap Tables | Nolan & Sürmeli Labs                

                          displaying beautiful tables with Bootstrap Tables

                          Using markdown to display tables is easy. Just use the following syntax:

                          | Left aligned | Center aligned | Right aligned |
                           | :----------- | :------------: | ------------: |
                           | Left 1       |    center 1    |       right 1 |
                           | Left 2       |    center 2    |       right 2 |
                          diff --git a/blog/2023/tikzjax/index.html b/blog/2023/tikzjax/index.html
                          index b7686a80ffa1..aacc27d1f009 100644
                          --- a/blog/2023/tikzjax/index.html
                          +++ b/blog/2023/tikzjax/index.html
                          @@ -1,4 +1,4 @@
                          -        a post with TikZJax | Nolan & Sürmeli Lab                

                          a post with TikZJax

                          This is an example post with TikZ code. TikZJax converts script tags (containing TikZ code) into SVGs.

                          a post with TikZJax

                          This is an example post with TikZ code. TikZJax converts script tags (containing TikZ code) into SVGs.

                          a post with videos

                          This is an example post with videos. It supports local video files.

                          A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all.

                          It does also support embedding videos from different sources. Here are some examples:




                            Enjoy Reading This Article?

                            Here are some more articles you might like to read next:

                          • a post with images
                          • a post with audios
                          • a post with advanced image components
                          • a distill-style blog post
                          • a post with jupyter notebook
                          • \ No newline at end of file + a post with videos | Nolan & Sürmeli Labs

                            a post with videos

                            This is an example post with videos. It supports local video files.

                            A simple, elegant caption looks good between video rows, after each row, or doesn't have to be there at all.

                            It does also support embedding videos from different sources. Here are some examples:




                              Enjoy Reading This Article?

                              Here are some more articles you might like to read next:

                            • a post with images
                            • a post with audios
                            • a post with advanced image components
                            • a distill-style blog post
                            • a post with jupyter notebook
                            • \ No newline at end of file diff --git a/blog/2024/advanced-images/index.html b/blog/2024/advanced-images/index.html index dbc0529d1992..5c4c12b74d36 100644 --- a/blog/2024/advanced-images/index.html +++ b/blog/2024/advanced-images/index.html @@ -1 +1 @@ - a post with advanced image components | Nolan & Sürmeli Lab

                              a post with advanced image components

                              This is an example post with advanced image components.

                              Image Slider

                              This is a simple image slider. It uses the Swiper library. Check the examples page for more information of what you can achieve with it.

                              Image Comparison Slider

                              This is a simple image comparison slider. It uses the img-comparison-slider library. Check the examples page for more information of what you can achieve with it.




                                Enjoy Reading This Article?

                                Here are some more articles you might like to read next:

                              • a post with images
                              • a post with videos
                              • a distill-style blog post
                              • displaying beautiful tables with Bootstrap Tables
                              • a post with code diff
                              • \ No newline at end of file + a post with advanced image components | Nolan & Sürmeli Labs

                                a post with advanced image components

                                This is an example post with advanced image components.

                                Image Slider

                                This is a simple image slider. It uses the Swiper library. Check the examples page for more information of what you can achieve with it.

                                Image Comparison Slider

                                This is a simple image comparison slider. It uses the img-comparison-slider library. Check the examples page for more information of what you can achieve with it.




                                  Enjoy Reading This Article?

                                  Here are some more articles you might like to read next:

                                • a post with images
                                • a post with videos
                                • a distill-style blog post
                                • displaying beautiful tables with Bootstrap Tables
                                • a post with code diff
                                • \ No newline at end of file diff --git a/blog/2024/chartjs/index.html b/blog/2024/chartjs/index.html index 34de669378bd..77963e7d8b6d 100644 --- a/blog/2024/chartjs/index.html +++ b/blog/2024/chartjs/index.html @@ -1,4 +1,4 @@ - a post with chart.js | Nolan & Sürmeli Lab

                                  a post with chart.js

                                  This is an example post with some chart.js code.

                                  ```chartjs
                                  +        a post with chart.js | Nolan & Sürmeli Labs               

                                  a post with chart.js

                                  This is an example post with some chart.js code.

                                  ```chartjs
                                   {
                                     "type": "line",
                                     "data": {
                                  diff --git a/blog/2024/code-diff/index.html b/blog/2024/code-diff/index.html
                                  index 8c4a1697eead..d64cbb5c8760 100644
                                  --- a/blog/2024/code-diff/index.html
                                  +++ b/blog/2024/code-diff/index.html
                                  @@ -1,4 +1,4 @@
                                  -        a post with code diff | Nolan & Sürmeli Lab                  

                                  a post with code diff

                                  You can display diff code by using the regular markdown syntax:

                                  ```diff
                                  +        a post with code diff | Nolan & Sürmeli Labs                  

                                  a post with code diff

                                  You can display diff code by using the regular markdown syntax:

                                  ```diff
                                   diff --git a/sample.js b/sample.js
                                   index 0000001..0ddf2ba
                                   --- a/sample.js
                                  diff --git a/blog/2024/echarts/index.html b/blog/2024/echarts/index.html
                                  index 177f488f53aa..610b1c98b8ed 100644
                                  --- a/blog/2024/echarts/index.html
                                  +++ b/blog/2024/echarts/index.html
                                  @@ -1,4 +1,4 @@
                                  -        a post with echarts | Nolan & Sürmeli Lab               

                                  a post with echarts

                                  This is an example post with some echarts code.

                                  ```echarts
                                  +        a post with echarts | Nolan & Sürmeli Labs               

                                  a post with echarts

                                  This is an example post with some echarts code.

                                  ```echarts
                                   {
                                     "title": {
                                       "text": "ECharts Getting Started Example"
                                  diff --git a/blog/2024/geojson-map/index.html b/blog/2024/geojson-map/index.html
                                  index fc6f1d74a558..4ccae0467576 100644
                                  --- a/blog/2024/geojson-map/index.html
                                  +++ b/blog/2024/geojson-map/index.html
                                  @@ -1,4 +1,4 @@
                                  -        a post with geojson | Nolan & Sürmeli Lab                

                                  a post with geojson

                                  This is an example post with some geojson code. The support is provided thanks to Leaflet. To create your own visualization, go to geojson.io.

                                  ```geojson
                                  +        a post with geojson | Nolan & Sürmeli Labs                

                                  a post with geojson

                                  This is an example post with some geojson code. The support is provided thanks to Leaflet. To create your own visualization, go to geojson.io.

                                  ```geojson
                                   {
                                     "type": "FeatureCollection",
                                     "features": [
                                  diff --git a/blog/2024/index.html b/blog/2024/index.html
                                  index b1eb655db2ff..bb5fded13fef 100644
                                  --- a/blog/2024/index.html
                                  +++ b/blog/2024/index.html
                                  @@ -1 +1 @@
                                  -        2024 | Nolan & Sürmeli Lab               

                                  2024

                                  an archive of posts from this year

                                  \ No newline at end of file + 2024 | Nolan & Sürmeli Labs

                                  2024

                                  an archive of posts from this year

                                  \ No newline at end of file diff --git a/blog/2024/vega-lite/index.html b/blog/2024/vega-lite/index.html index 49256c821289..c58477a42b02 100644 --- a/blog/2024/vega-lite/index.html +++ b/blog/2024/vega-lite/index.html @@ -1,4 +1,4 @@ - a post with vega lite | Nolan & Sürmeli Lab

                                  a post with vega lite

                                  This is an example post with some vega lite code.

                                  ```vega_lite
                                  +        a post with vega lite | Nolan & Sürmeli Labs               

                                  a post with vega lite

                                  This is an example post with some vega lite code.

                                  ```vega_lite
                                   {
                                     "$schema": "https://vega.github.io/schema/vega-lite/v5.json",
                                     "description": "A dot plot showing each movie in the database, and the difference from the average movie rating. The display is sorted by year to visualize everything in sequential order. The graph is for all Movies before 2019.",
                                  diff --git a/blog/category/external-services/index.html b/blog/category/external-services/index.html
                                  index a3e427dcb743..af8dd8d7b02f 100644
                                  --- a/blog/category/external-services/index.html
                                  +++ b/blog/category/external-services/index.html
                                  @@ -1 +1 @@
                                  -        external-services | Nolan & Sürmeli Lab               

                                  external-services

                                  an archive of posts in this category

                                  \ No newline at end of file + external-services | Nolan & Sürmeli Labs

                                  external-services

                                  an archive of posts in this category

                                  \ No newline at end of file diff --git a/blog/category/sample-posts/index.html b/blog/category/sample-posts/index.html index 87a28e5bada7..2d57af502e8a 100644 --- a/blog/category/sample-posts/index.html +++ b/blog/category/sample-posts/index.html @@ -1 +1 @@ - sample-posts | Nolan & Sürmeli Lab
                                  \ No newline at end of file + sample-posts | Nolan & Sürmeli Labs
                                  \ No newline at end of file diff --git a/blog/tag/audios/index.html b/blog/tag/audios/index.html index 548af042b38e..7ae051e5a40d 100644 --- a/blog/tag/audios/index.html +++ b/blog/tag/audios/index.html @@ -1 +1 @@ - audios | Nolan & Sürmeli Lab

                                  audios

                                  an archive of posts with this tag

                                  \ No newline at end of file + audios | Nolan & Sürmeli Labs

                                  audios

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/bib/index.html b/blog/tag/bib/index.html index 8aee13d52329..beae44043041 100644 --- a/blog/tag/bib/index.html +++ b/blog/tag/bib/index.html @@ -1 +1 @@ - bib | Nolan & Sürmeli Lab

                                  bib

                                  an archive of posts with this tag

                                  \ No newline at end of file + bib | Nolan & Sürmeli Labs

                                  bib

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/blockquotes/index.html b/blog/tag/blockquotes/index.html index 2e3a968ab43c..04bfeae4f134 100644 --- a/blog/tag/blockquotes/index.html +++ b/blog/tag/blockquotes/index.html @@ -1 +1 @@ - blockquotes | Nolan & Sürmeli Lab

                                  blockquotes

                                  an archive of posts with this tag

                                  \ No newline at end of file + blockquotes | Nolan & Sürmeli Labs

                                  blockquotes

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/charts/index.html b/blog/tag/charts/index.html index 0a69c16d0ae0..4581a7e4b17f 100644 --- a/blog/tag/charts/index.html +++ b/blog/tag/charts/index.html @@ -1 +1 @@ - charts | Nolan & Sürmeli Lab

                                  charts

                                  an archive of posts with this tag

                                  \ No newline at end of file + charts | Nolan & Sürmeli Labs

                                  charts

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/code/index.html b/blog/tag/code/index.html index 88d8a4c89674..fa8899ad7d15 100644 --- a/blog/tag/code/index.html +++ b/blog/tag/code/index.html @@ -1 +1 @@ - code | Nolan & Sürmeli Lab

                                  code

                                  an archive of posts with this tag

                                  \ No newline at end of file + code | Nolan & Sürmeli Labs

                                  code

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/comments/index.html b/blog/tag/comments/index.html index 524080128eac..0e3fd30f645e 100644 --- a/blog/tag/comments/index.html +++ b/blog/tag/comments/index.html @@ -1 +1 @@ - comments | Nolan & Sürmeli Lab

                                  comments

                                  an archive of posts with this tag

                                  \ No newline at end of file + comments | Nolan & Sürmeli Labs

                                  comments

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/diagrams/index.html b/blog/tag/diagrams/index.html index 96c246210aca..2260834fa378 100644 --- a/blog/tag/diagrams/index.html +++ b/blog/tag/diagrams/index.html @@ -1 +1 @@ - diagrams | Nolan & Sürmeli Lab

                                  diagrams

                                  an archive of posts with this tag

                                  \ No newline at end of file + diagrams | Nolan & Sürmeli Labs

                                  diagrams

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/distill/index.html b/blog/tag/distill/index.html index f2e05e7450e2..20f223b3b668 100644 --- a/blog/tag/distill/index.html +++ b/blog/tag/distill/index.html @@ -1 +1 @@ - distill | Nolan & Sürmeli Lab

                                  distill

                                  an archive of posts with this tag

                                  \ No newline at end of file + distill | Nolan & Sürmeli Labs

                                  distill

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/formatting/index.html b/blog/tag/formatting/index.html index 0ae75694b614..97605fd2d957 100644 --- a/blog/tag/formatting/index.html +++ b/blog/tag/formatting/index.html @@ -1 +1 @@ - formatting | Nolan & Sürmeli Lab
                                  \ No newline at end of file + formatting | Nolan & Sürmeli Labs
                                  \ No newline at end of file diff --git a/blog/tag/images/index.html b/blog/tag/images/index.html index 061a14daf99b..c4e6df0da1f3 100644 --- a/blog/tag/images/index.html +++ b/blog/tag/images/index.html @@ -1 +1 @@ - images | Nolan & Sürmeli Lab

                                  images

                                  an archive of posts with this tag

                                  \ No newline at end of file + images | Nolan & Sürmeli Labs

                                  images

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/jupyter/index.html b/blog/tag/jupyter/index.html index 22f7f73d2fbb..6c099d6b5181 100644 --- a/blog/tag/jupyter/index.html +++ b/blog/tag/jupyter/index.html @@ -1 +1 @@ - jupyter | Nolan & Sürmeli Lab

                                  jupyter

                                  an archive of posts with this tag

                                  \ No newline at end of file + jupyter | Nolan & Sürmeli Labs

                                  jupyter

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/links/index.html b/blog/tag/links/index.html index 7988d81ebb82..3a1a8658da26 100644 --- a/blog/tag/links/index.html +++ b/blog/tag/links/index.html @@ -1 +1 @@ - links | Nolan & Sürmeli Lab

                                  links

                                  an archive of posts with this tag

                                  \ No newline at end of file + links | Nolan & Sürmeli Labs

                                  links

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/maps/index.html b/blog/tag/maps/index.html index 84c41513788a..55fc3ba28081 100644 --- a/blog/tag/maps/index.html +++ b/blog/tag/maps/index.html @@ -1 +1 @@ - maps | Nolan & Sürmeli Lab

                                  maps

                                  an archive of posts with this tag

                                  \ No newline at end of file + maps | Nolan & Sürmeli Labs

                                  maps

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/math/index.html b/blog/tag/math/index.html index 2b507311eef9..22a178c6a7c1 100644 --- a/blog/tag/math/index.html +++ b/blog/tag/math/index.html @@ -1 +1 @@ - math | Nolan & Sürmeli Lab

                                  math

                                  an archive of posts with this tag

                                  \ No newline at end of file + math | Nolan & Sürmeli Labs

                                  math

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/metadata/index.html b/blog/tag/metadata/index.html index a6becffde34a..4b1bbe318ee4 100644 --- a/blog/tag/metadata/index.html +++ b/blog/tag/metadata/index.html @@ -1 +1 @@ - metadata | Nolan & Sürmeli Lab

                                  metadata

                                  an archive of posts with this tag

                                  \ No newline at end of file + metadata | Nolan & Sürmeli Labs

                                  metadata

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/sidebar/index.html b/blog/tag/sidebar/index.html index 0dab592ad499..c2065c561d70 100644 --- a/blog/tag/sidebar/index.html +++ b/blog/tag/sidebar/index.html @@ -1 +1 @@ - sidebar | Nolan & Sürmeli Lab

                                  sidebar

                                  an archive of posts with this tag

                                  \ No newline at end of file + sidebar | Nolan & Sürmeli Labs

                                  sidebar

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/tables/index.html b/blog/tag/tables/index.html index 9e42d46728ef..2b8e4198d693 100644 --- a/blog/tag/tables/index.html +++ b/blog/tag/tables/index.html @@ -1 +1 @@ - tables | Nolan & Sürmeli Lab

                                  tables

                                  an archive of posts with this tag

                                  \ No newline at end of file + tables | Nolan & Sürmeli Labs

                                  tables

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/toc/index.html b/blog/tag/toc/index.html index 9f4357965ebe..f2eb2ddfa6eb 100644 --- a/blog/tag/toc/index.html +++ b/blog/tag/toc/index.html @@ -1 +1 @@ - toc | Nolan & Sürmeli Lab

                                  toc

                                  an archive of posts with this tag

                                  \ No newline at end of file + toc | Nolan & Sürmeli Labs

                                  toc

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/blog/tag/videos/index.html b/blog/tag/videos/index.html index c3c8b6d799b5..1ec7b22a1077 100644 --- a/blog/tag/videos/index.html +++ b/blog/tag/videos/index.html @@ -1 +1 @@ - videos | Nolan & Sürmeli Lab

                                  videos

                                  an archive of posts with this tag

                                  \ No newline at end of file + videos | Nolan & Sürmeli Labs

                                  videos

                                  an archive of posts with this tag

                                  \ No newline at end of file diff --git a/data-and-code/index.html b/data-and-code/index.html index 6d2a3fec0a90..25a79a8a1e80 100644 --- a/data-and-code/index.html +++ b/data-and-code/index.html @@ -1 +1 @@ - data & code | Nolan & Sürmeli Lab

                                  data & code

                                  We aim to always publish reproducible code via GitHub.
                                  We also publish our data using the University of Edinburgh DataShare: Nolan lab / Surmeli lab.

                                  \ No newline at end of file + data & code | Nolan & Sürmeli Labs

                                  data & code

                                  We aim to always publish reproducible code via GitHub.
                                  We also publish our data using the University of Edinburgh DataShare: Nolan lab / Surmeli lab.

                                  \ No newline at end of file diff --git a/feed.xml b/feed.xml index 15d550ce04e1..0b737f7133bc 100644 --- a/feed.xml +++ b/feed.xml @@ -1,4 +1,4 @@ -Jekyll2024-03-30T17:18:01+00:00https://mattnolanlab.github.io/feed.xmlNolan &amp; Sürmeli LabThe Nolan & Surmelli Lab website. a post with code diff2024-01-27T19:22:00+00:002024-01-27T19:22:00+00:00https://mattnolanlab.github.io/blog/2024/code-diffYou can display diff code by using the regular markdown syntax:

                                  ```diff
                                  +Jekyll2024-03-30T17:23:23+00:00https://mattnolanlab.github.io/feed.xmlNolan &amp; Sürmeli LabsThe Nolan & Sürmeli Labs website. a post with code diff2024-01-27T19:22:00+00:002024-01-27T19:22:00+00:00https://mattnolanlab.github.io/blog/2024/code-diffYou can display diff code by using the regular markdown syntax:

                                  ```diff
                                   diff --git a/sample.js b/sample.js
                                   index 0000001..0ddf2ba
                                   --- a/sample.js
                                  diff --git a/index.html b/index.html
                                  index c6568414ac2e..40133cbc2829 100644
                                  --- a/index.html
                                  +++ b/index.html
                                  @@ -1 +1 @@
                                  -        Nolan & Sürmeli Lab               

                                  We aim to understand the cellular and molecular basis for computations that underlie episodic memory.
                                  We are based in the Centre for Discovery Brain Sciences at the University of Edinburgh.
                                  Our research follows four themes:

                                  Circuit organisation. We are investigating the local and long-range organisation of circuits in the entorhinal cortex. We want to understand how molecular level organisation within the entorhinal cortex leads to architectural principles that are critical for memory storage and retrieval.

                                  Circuit computations. We are using high density neural recordings and neural network models to investigate how entorhinal cortex circuits implement computations important for spatial memory.

                                  Technology development. With collaborators in the Institute for Integrated and Nano Systems we are developing kilohertz frame rate cameras for imaging neural activity, and with collaborators in the School of informatics and the Centre for Statistics we are developing new tools for analysing the organisation and activation of neural circuits.

                                  Circuit disorders. Many disorders of the brain appear to result from circuit level deficits. We believe that understanding the fundamental principles for neural circuit computation will be essential for understanding and treating disorders. We are addressing this by focusing on models of autism spectrum disorders and Alzheimer’s disease.

                                  news

                                  Mar 28, 2024 Harry’s paper investigating grid firing and behaviour is out. A lot of hard work and a very exciting result. Well done Harry!
                                  Mar 14, 2024 We’re building the new website!
                                  \ No newline at end of file + Nolan & Sürmeli Labs

                                  We aim to understand the cellular and molecular basis for computations that underlie episodic memory.
                                  We are based in the Centre for Discovery Brain Sciences at the University of Edinburgh.
                                  Our research follows four themes:

                                  Circuit organisation. We are investigating the local and long-range organisation of circuits in the entorhinal cortex. We want to understand how molecular level organisation within the entorhinal cortex leads to architectural principles that are critical for memory storage and retrieval.

                                  Circuit computations. We are using high density neural recordings and neural network models to investigate how entorhinal cortex circuits implement computations important for spatial memory.

                                  Technology development. With collaborators in the Institute for Integrated and Nano Systems we are developing kilohertz frame rate cameras for imaging neural activity, and with collaborators in the School of informatics and the Centre for Statistics we are developing new tools for analysing the organisation and activation of neural circuits.

                                  Circuit disorders. Many disorders of the brain appear to result from circuit level deficits. We believe that understanding the fundamental principles for neural circuit computation will be essential for understanding and treating disorders. We are addressing this by focusing on models of autism spectrum disorders and Alzheimer’s disease.

                                  news

                                  Mar 28, 2024 Harry’s paper investigating grid firing and behaviour is out. A lot of hard work and a very exciting result. Well done Harry!
                                  Mar 14, 2024 We’re building the new website!
                                  \ No newline at end of file diff --git a/lab-manual/index.html b/lab-manual/index.html index 367fb56d0cc4..c3d57e7989e0 100644 --- a/lab-manual/index.html +++ b/lab-manual/index.html @@ -1 +1 @@ - lab manual | Nolan & Sürmeli Lab

                                  lab manual

                                  This document is inspired by Mariam Aly’s excellent article about lab manuals and by her lab’s manual. This page contains information about the lab goals, expectations and responsibilities and publication policies. Information about mailing lists, calendars, contact numbers, computing resources, animal management and experimental protocols is on our internal wiki.

                                  Goals

                                  We aim to do the best science we can with the resources available to us. We are committed to supporting creative and rigorous science that aims to address important questions. We expect everyone in our labs to share this commitment. We also do our best to make the process fun.

                                  Expectations and responsibilities

                                  With help from current and previous lab members we’ve put together below principles and general expectations for everyone, for ourselves, for postdocs and PhD students, for lab staff and for undergraduates.

                                  Everyone

                                  We’re lucky to be surrounded by talented colleagues from diverse backgrounds. Our expectation is that everyone will contribute to a respectful, open, positive and productive work environment.

                                  • Act respectfully at all times towards fellow lab members, colleagues and the public at large. This includes following the University’s dignitiy and respect policy.
                                  • Ask questions. Everyone has a right to ask questions and seniority is no guarantee of having the right answer.
                                  • Base arguments and decisions on sound theory and evidence.
                                  • Maintaining a healthy work life balance is important for you and your colleagues.
                                  • Recognise and give credit to other people for their ideas and contributions. This includes your lab colleagues and people outside the lab.
                                  • Be aware of the broader context in which we work. This includes the relevance of what we do for the wider public and effects on the environment of travel and general use of resources.

                                  As well as good ideas good science requires experiments that are rigorous and reproducible.

                                  • Experiments are often difficult and can take time to get working well. It’s as important to share problems as successes. We can all learn from problems and other people may have helpful suggestions.
                                  • Design your experiments carefully to address a clear question. When relevant ensure appropriate consideration of statistical design issues including power, effect size, group size and blinding.
                                  • Ensure your data is of the best quality you can achieve. Have clear pre-defined criteria for data quality and don’t spend time on data that don’t reach these criteria. If you’re developing a new method then develop quality criteria.
                                  • Ensure that your research is reproducible. This includes documenting methods and where possible implementing analyses in code so they can be repeated using raw data as an input.

                                  Gülşen and Matt

                                  We aim to ensure our labs carry out rigorous science that addresses important research questions, to support students and staff in our labs in their personal and career development, and to provide a respectful and supportive environment for everyone in our labs. Ways we try to achieve these goals include:

                                  • Setting big picture scientific goals and objectives.
                                  • Helping you to develop your research and provide opportunities for training.
                                  • Meeting regularly with you and being available for ad hoc meetings.
                                  • Giving feedback and perspectives on projects and the field more generally.
                                  • Obtaining resources for lab projects.
                                  • Supporting your applications for funding.
                                  • Providing advice and support for future stages of your career.
                                  • Working with you to write up projects for publication.

                                  Postdocs, research staff and PhD students

                                  We expect postdocs and PhD students to lead research project addressing questions within the big picture goals of the Sürmeli and Nolan labs. We expect research staff to play important roles contributing to the delivery of research projects. We hope that you will take opportunities to contribute collaboratively to other lab projects and to training of junior lab members, and we expect you to make the our labs a collaborative and intellectually engaging environment.

                                  To achive these goals we expect you to:

                                  • Work with Gülşen and / or Matt to set your research goals and prioritise your commitments.
                                  • Arrange training to meet your project goals. Gülşen or Matt will help you identify other lab members or collaborators to contribute to your training.
                                  • Maintain careful records of lab methods, including training received, and of all experiments.
                                  • Work independently towards your project goals. We expect you to encounter challenges and obstacles. We suggest problem solving in the following order: 1, review your notes and records to identifiy overlooked issues; 2, consult the wiki, equipment manuals and / or published protocols; 3, consult with lab colleagues (we put this third as this way you save your colleagues time for the most important problems, while following steps 1 and 2 will also more effectively develop your expertise); 4, discuss with Gülşen or Matt. If your trouble shooting identifies alternative strategies, this is very welcome, but be sure to discuss with Gülşen or Matt and your collaborators before initiating major changes of direction.
                                  • Share your expertise with other group members.
                                  • Identify skills and expertise you would like to develop and take advantage of opportunities to do so. We expect everyone to use at least 10 days per year for training or other professional development.
                                  • Keep up to date with detailed literature in your field and important advances across neurocience in general.
                                  • Contribute to supervision of MSc and undergraduate research students.
                                  • Take holidays and aim to maintain a healthy work-like balance.

                                  Masters and undergraduate students

                                  We strongly encourage you to take advantage of your time in the lab to learn from other people about what they are doing. You will usually work with a postdoc or PhD student on a specific question as part of a larger project. This person will provide you with lab training needed to address your project goals

                                  We expect you to take excellent notes on your training and to follow these when carrying out experiments. You very likely will still encounter unexpected challenges. We suggest problem solving in the following order:

                                  1. Review your notes and records to check if there are any issues you’ve overlooked.
                                  2. Consult with the person supervising you. You should not change or modify protocols without consulting with the person supervising you; this will very likely end up wasting your time and lab resources.

                                  You will meet regularly with Gülşen and / or Matt to discuss your work and plans.

                                  You should read literature around your project and more generally.

                                  Publication policies

                                  Preprints and journals

                                  We aim to share all manuscripts as preprints before submitting to a journal. Which journals to submit to is a joint decision between first and lead author(s). Our preference is to submit to non-profit journals with a strong commitment to open science (e.g. eLife). We recognise that scientific job and funding evaluation is far from perfect and will submit elsewhere if the first author prefers.

                                  Data and code

                                  We aim to share all data and code, see data & code.

                                  Authorship

                                  We support use of the CRedIT taxonomy for documenting author contributions to research papers.Qualificaton for authorship requires meeting at least one of the CRedIT criteria. In determining position on authorship lists we follow the convention that the first author(s) have usually carried out most of the key experiments and provide strong intellectual drive, the senior authors have provided supervision, leadership and direction, and intermediate authors have contributed consistent with the CRedIT criteria. When multiple people have made substantial contributions of key experiments and ideas to a project, and where publishing these contributions as a single study is likely to lead to a more impactful paper, then the major contributors will share joing or equal contributing first author status. If at any stage of a project you would like to discuss authorship issues then please mention this to Matt or Gülşen. We aim that all authorship decisions are made collaboratively and with the agreement of all authors. In the even of unresolvable differences then Matt or Gülşen will have responsibility for the final decision.

                                  \ No newline at end of file + lab manual | Nolan & Sürmeli Labs

                                  lab manual

                                  This document is inspired by Mariam Aly’s excellent article about lab manuals and by her lab’s manual. This page contains information about the lab goals, expectations and responsibilities and publication policies. Information about mailing lists, calendars, contact numbers, computing resources, animal management and experimental protocols is on our internal wiki.

                                  Goals

                                  We aim to do the best science we can with the resources available to us. We are committed to supporting creative and rigorous science that aims to address important questions. We expect everyone in our labs to share this commitment. We also do our best to make the process fun.

                                  Expectations and responsibilities

                                  With help from current and previous lab members we’ve put together below principles and general expectations for everyone, for ourselves, for postdocs and PhD students, for lab staff and for undergraduates.

                                  Everyone

                                  We’re lucky to be surrounded by talented colleagues from diverse backgrounds. Our expectation is that everyone will contribute to a respectful, open, positive and productive work environment.

                                  • Act respectfully at all times towards fellow lab members, colleagues and the public at large. This includes following the University’s dignitiy and respect policy.
                                  • Ask questions. Everyone has a right to ask questions and seniority is no guarantee of having the right answer.
                                  • Base arguments and decisions on sound theory and evidence.
                                  • Maintaining a healthy work life balance is important for you and your colleagues.
                                  • Recognise and give credit to other people for their ideas and contributions. This includes your lab colleagues and people outside the lab.
                                  • Be aware of the broader context in which we work. This includes the relevance of what we do for the wider public and effects on the environment of travel and general use of resources.

                                  As well as good ideas good science requires experiments that are rigorous and reproducible.

                                  • Experiments are often difficult and can take time to get working well. It’s as important to share problems as successes. We can all learn from problems and other people may have helpful suggestions.
                                  • Design your experiments carefully to address a clear question. When relevant ensure appropriate consideration of statistical design issues including power, effect size, group size and blinding.
                                  • Ensure your data is of the best quality you can achieve. Have clear pre-defined criteria for data quality and don’t spend time on data that don’t reach these criteria. If you’re developing a new method then develop quality criteria.
                                  • Ensure that your research is reproducible. This includes documenting methods and where possible implementing analyses in code so they can be repeated using raw data as an input.

                                  Gülşen and Matt

                                  We aim to ensure our labs carry out rigorous science that addresses important research questions, to support students and staff in our labs in their personal and career development, and to provide a respectful and supportive environment for everyone in our labs. Ways we try to achieve these goals include:

                                  • Setting big picture scientific goals and objectives.
                                  • Helping you to develop your research and provide opportunities for training.
                                  • Meeting regularly with you and being available for ad hoc meetings.
                                  • Giving feedback and perspectives on projects and the field more generally.
                                  • Obtaining resources for lab projects.
                                  • Supporting your applications for funding.
                                  • Providing advice and support for future stages of your career.
                                  • Working with you to write up projects for publication.

                                  Postdocs, research staff and PhD students

                                  We expect postdocs and PhD students to lead research project addressing questions within the big picture goals of the Sürmeli and Nolan labs. We expect research staff to play important roles contributing to the delivery of research projects. We hope that you will take opportunities to contribute collaboratively to other lab projects and to training of junior lab members, and we expect you to make the our labs a collaborative and intellectually engaging environment.

                                  To achive these goals we expect you to:

                                  • Work with Gülşen and / or Matt to set your research goals and prioritise your commitments.
                                  • Arrange training to meet your project goals. Gülşen or Matt will help you identify other lab members or collaborators to contribute to your training.
                                  • Maintain careful records of lab methods, including training received, and of all experiments.
                                  • Work independently towards your project goals. We expect you to encounter challenges and obstacles. We suggest problem solving in the following order: 1, review your notes and records to identifiy overlooked issues; 2, consult the wiki, equipment manuals and / or published protocols; 3, consult with lab colleagues (we put this third as this way you save your colleagues time for the most important problems, while following steps 1 and 2 will also more effectively develop your expertise); 4, discuss with Gülşen or Matt. If your trouble shooting identifies alternative strategies, this is very welcome, but be sure to discuss with Gülşen or Matt and your collaborators before initiating major changes of direction.
                                  • Share your expertise with other group members.
                                  • Identify skills and expertise you would like to develop and take advantage of opportunities to do so. We expect everyone to use at least 10 days per year for training or other professional development.
                                  • Keep up to date with detailed literature in your field and important advances across neurocience in general.
                                  • Contribute to supervision of MSc and undergraduate research students.
                                  • Take holidays and aim to maintain a healthy work-like balance.

                                  Masters and undergraduate students

                                  We strongly encourage you to take advantage of your time in the lab to learn from other people about what they are doing. You will usually work with a postdoc or PhD student on a specific question as part of a larger project. This person will provide you with lab training needed to address your project goals

                                  We expect you to take excellent notes on your training and to follow these when carrying out experiments. You very likely will still encounter unexpected challenges. We suggest problem solving in the following order:

                                  1. Review your notes and records to check if there are any issues you’ve overlooked.
                                  2. Consult with the person supervising you. You should not change or modify protocols without consulting with the person supervising you; this will very likely end up wasting your time and lab resources.

                                  You will meet regularly with Gülşen and / or Matt to discuss your work and plans.

                                  You should read literature around your project and more generally.

                                  Publication policies

                                  Preprints and journals

                                  We aim to share all manuscripts as preprints before submitting to a journal. Which journals to submit to is a joint decision between first and lead author(s). Our preference is to submit to non-profit journals with a strong commitment to open science (e.g. eLife). We recognise that scientific job and funding evaluation is far from perfect and will submit elsewhere if the first author prefers.

                                  Data and code

                                  We aim to share all data and code, see data & code.

                                  Authorship

                                  We support use of the CRedIT taxonomy for documenting author contributions to research papers.Qualificaton for authorship requires meeting at least one of the CRedIT criteria. In determining position on authorship lists we follow the convention that the first author(s) have usually carried out most of the key experiments and provide strong intellectual drive, the senior authors have provided supervision, leadership and direction, and intermediate authors have contributed consistent with the CRedIT criteria. When multiple people have made substantial contributions of key experiments and ideas to a project, and where publishing these contributions as a single study is likely to lead to a more impactful paper, then the major contributors will share joing or equal contributing first author status. If at any stage of a project you would like to discuss authorship issues then please mention this to Matt or Gülşen. We aim that all authorship decisions are made collaboratively and with the agreement of all authors. In the even of unresolvable differences then Matt or Gülşen will have responsibility for the final decision.

                                  \ No newline at end of file diff --git a/news/HarryPaper/index.html b/news/HarryPaper/index.html index a3664be584fd..595f07266fdd 100644 --- a/news/HarryPaper/index.html +++ b/news/HarryPaper/index.html @@ -1 +1 @@ - Harrypaper | Nolan & Sürmeli Lab

                                  Harrypaper

                                  Harry’s paper investigating grid firing and behaviour is out. A lot of hard work and a very exciting result. Well done Harry!

                                  \ No newline at end of file + Harrypaper | Nolan & Sürmeli Labs

                                  Harrypaper

                                  Harry’s paper investigating grid firing and behaviour is out. A lot of hard work and a very exciting result. Well done Harry!

                                  \ No newline at end of file diff --git a/news/announcement_1/index.html b/news/announcement_1/index.html index e9a9e667178f..238bc3497087 100644 --- a/news/announcement_1/index.html +++ b/news/announcement_1/index.html @@ -1 +1 @@ - Announcement_1 | Nolan & Sürmeli Lab

                                  Announcement_1

                                  We’re building the new website!

                                  \ No newline at end of file + Announcement_1 | Nolan & Sürmeli Labs

                                  Announcement_1

                                  We’re building the new website!

                                  \ No newline at end of file diff --git a/news/index.html b/news/index.html index 074ce027c231..f7464640af80 100644 --- a/news/index.html +++ b/news/index.html @@ -1 +1 @@ - news | Nolan & Sürmeli Lab

                                  news

                                  Mar 28, 2024 Harry’s paper investigating grid firing and behaviour is out. A lot of hard work and a very exciting result. Well done Harry!
                                  Mar 14, 2024 We’re building the new website!
                                  \ No newline at end of file + news | Nolan & Sürmeli Labs

                                  news

                                  Mar 28, 2024 Harry’s paper investigating grid firing and behaviour is out. A lot of hard work and a very exciting result. Well done Harry!
                                  Mar 14, 2024 We’re building the new website!
                                  \ No newline at end of file diff --git a/nolan-lab/index.html b/nolan-lab/index.html index c9814879b5bb..5e74eaa6f7c5 100644 --- a/nolan-lab/index.html +++ b/nolan-lab/index.html @@ -1 +1 @@ - Nolan lab | Nolan & Sürmeli Lab

                                  Nolan lab

                                  PI

                                  people/matt.jpg
                                  Matt Nolan

                                  If you are interested in joining the lab then please email me with a CV and a brief description of projects you’d like to work on.

                                  Postdocs

                                  people/ale.jpg
                                  Alessandro di Filippo

                                  people/bri.jpg
                                  Brianna Vandrey

                                  people/harry.jpg
                                  Harry Clark

                                  people/junji.jpg
                                  Junji Hua

                                  Research Software Engineers

                                  people/chris.jpeg
                                  Chris Halcrow

                                  PhD Students

                                  people/fill.png
                                  Ian Hawes

                                  people/wolf.jpg
                                  Wolf De Wulf

                                  www.wolfdewulf.eu

                                  CDT in Biomedical AI


                                  people/fill.png
                                  Yifang Wang

                                  EASTBIO Doctoral Program


                                  people/zita.png
                                  Zita Francsics

                                  Simons Initiative for the Developing Brain


                                  \ No newline at end of file + Nolan lab | Nolan & Sürmeli Labs

                                  Nolan lab

                                  PI

                                  people/matt.jpg
                                  Matt Nolan

                                  If you are interested in joining the lab then please email me with a CV and a brief description of projects you’d like to work on.

                                  Postdocs

                                  people/ale.jpg
                                  Alessandro di Filippo

                                  people/bri.jpg
                                  Brianna Vandrey

                                  people/harry.jpg
                                  Harry Clark

                                  people/junji.jpg
                                  Junji Hua

                                  Research Software Engineers

                                  people/chris.jpeg
                                  Chris Halcrow

                                  PhD Students

                                  people/fill.png
                                  Ian Hawes

                                  people/wolf.jpg
                                  Wolf De Wulf

                                  www.wolfdewulf.eu

                                  CDT in Biomedical AI


                                  people/fill.png
                                  Yifang Wang

                                  EASTBIO Doctoral Program


                                  people/zita.png
                                  Zita Francsics

                                  Simons Initiative for the Developing Brain


                                  \ No newline at end of file diff --git a/projects/spatial_memory/index.html b/projects/spatial_memory/index.html index d28b2118f166..8cfb1cbd8cc4 100644 --- a/projects/spatial_memory/index.html +++ b/projects/spatial_memory/index.html @@ -1 +1 @@ - Spatial Memory | Nolan & Sürmeli Lab

                                  Spatial Memory

                                  The Neural Map

                                  Our sense of navigation is not something we tend to consider too deeply in our day-to-day lives. Nevertheless, we somehow have a subconscious knowledge of were we are in the world and where we are going. We use it everywhere - to walk home, to go to the grocery store, to walk to the bathroom in the middle of the night.

                                  How we navigate is largely dependent on what information is available to us. The brain is complex and uses a variety of strategies to determine our position, relative to other landmarks and to start or goal locations. Among those is beaconing, a strategy where we use a distant object to navigate to - say, “Hey, there’s a neon sign here saying ‘Pub’” - that’s probably the entrance to the pub. But what if you don’t have those clues?

                                  This is where path integration comes in (Tennant et al., 2022).


                                  Path Integration

                                  Say you’re out on a hike with your friends. You’re full of energy during the day and make plenty of detours before you get to the campsite and settle in for a restful night, listening to the soothing patter of rain on the tent. Oh no! It’s 2am and you’re woken up in what an optimist would call a ‘puddle’, and anyone else might label ‘a decidedly sizable body of water’.

                                  So much for the guy on Facebook Marketplace promising that the tent was waterproof.

                                  You and your friend make the decision to trek back to the car park. You wish one of you had brought a headlamp at least - you can’t use any landmarks to navigate. Despite that, you somehow manage to make it back in one piece, going straight from the campsite to the carpark without any of the diversions you had undertaken on the way there. How?

                                  Two types of sensory information are required to update where we think we are: Allothetic information we get from the outside environment, like that ‘Pub’ sign. Idiothetic information is generated by the body itself. For example, the brain signals responsible for walking to the pub also provide us with information about how far we’ve walked so far. Path integration uses these idiothetic cues to transverse the mental map in our head. For example, a mouse that is foraging and takes a long, winding trajectory towards its goal will have ‘calculated’ its displacement from its nest and can make a beeline safely back if it suddenly runs into a fox.

                                  mouse integration

                                  Studying path integration is complicated by the fact that it’s only one part of the mechanism behind navigation. It’s an error-prone system, and so it works in combination with other information to create a path - for example, a mouse might use remembered landmarks, olfaction and even way-marking to navigate through an environment. Studying the neurons specifically involved in path integration therefore requires us to remove all other possibilities but using path integration. How do we do that?

                                  pi 1

                                  One way of studying path integration is using virtual reality. Mice run through a VR corridor on a treadmill until there’s a visual cue. If they stop at the visual cue, they get a treat. After a few repetitions, the visual cue is removed - yet the mice still stop in the place where the visual cue would have been. If there are no external cues for the mice to see, how do they know when to stop?

                                  The mice can’t use other navigational strategies, such as beaconing, because there’s no allothetic cues, so they’re left with path integration. They might have remembered the time it took to run to the reward zone - but when the speed of the treadmill was changed, the mice didn’t overshoot the reward zone, despite running faster. This implies they weren’t measuring the time, but were instead getting their information from a collection of self-motion cues. This includes proprioception (the sense of your self-position and self-movement) along with the vestibular system (your inner ear, which provides a sense of balance and awareness of our head and body in space) and motor efference. Over longer distances, the accuracy of this system drops without external input such as landmarks, as small errors start to accumulate and the mice start to stop further away from the reward zone.

                                  pi 1

                                  Cell types

                                  Path integration is just one of the many navigational strategies we want to study to understand the basis of the neural map. There are many specialised cell types involved in navigation. For the purpose of this website, let’s focus on three: place cells, grid cells, and head direction cells.

                                  cell types

                                  Grid cells are place-modulated neurons located primarily in the entorhinal cortex that fire periodically in space, mapping a triangular grid across an environment. As an animal moves through space, grid cells fire to create hexagonal patterns that allow us to map this space. Again, a population of grid cells alone can encode a spatial map

                                  Place cells located in the hippocampus, fire when an animal enters a specific location in space. A population of place cells alone can encode a spatial map.

                                  Head direction cells are primarily found in the postsubiculum, and provide directional information by preferentially firing in specific directions. A population of head direction cells can encode which direction you are facing in your spatial map.

                                  These cells potentially have uses outside of encoding physical space - their coding mechanism may be used for more general problem sets, such as cognitive mapping. Cognitive mapping refers to swapping out the three-dimensional world we interact with for a different, continuous dimension that represents an abstract concept. The same way we might encode the map of our room, we might use the hexagonal-firing properties of grid cells to represent, for example, conceptual spaces, such as hierarchically organizing ideas within our brain, or recording temporal sequences of events.

                                  References

                                  2022

                                  1. Spatial representation by ramping activity of neurons in the retrohippocampal cortex
                                    Sarah A. Tennant ,  Harry Clark ,  Ian Hawes , and 6 more authors
                                    Oct 2022
                                  \ No newline at end of file + Spatial Memory | Nolan & Sürmeli Labs

                                  Spatial Memory

                                  The Neural Map

                                  Our sense of navigation is not something we tend to consider too deeply in our day-to-day lives. Nevertheless, we somehow have a subconscious knowledge of were we are in the world and where we are going. We use it everywhere - to walk home, to go to the grocery store, to walk to the bathroom in the middle of the night.

                                  How we navigate is largely dependent on what information is available to us. The brain is complex and uses a variety of strategies to determine our position, relative to other landmarks and to start or goal locations. Among those is beaconing, a strategy where we use a distant object to navigate to - say, “Hey, there’s a neon sign here saying ‘Pub’” - that’s probably the entrance to the pub. But what if you don’t have those clues?

                                  This is where path integration comes in (Tennant et al., 2022).


                                  Path Integration

                                  Say you’re out on a hike with your friends. You’re full of energy during the day and make plenty of detours before you get to the campsite and settle in for a restful night, listening to the soothing patter of rain on the tent. Oh no! It’s 2am and you’re woken up in what an optimist would call a ‘puddle’, and anyone else might label ‘a decidedly sizable body of water’.

                                  So much for the guy on Facebook Marketplace promising that the tent was waterproof.

                                  You and your friend make the decision to trek back to the car park. You wish one of you had brought a headlamp at least - you can’t use any landmarks to navigate. Despite that, you somehow manage to make it back in one piece, going straight from the campsite to the carpark without any of the diversions you had undertaken on the way there. How?

                                  Two types of sensory information are required to update where we think we are: Allothetic information we get from the outside environment, like that ‘Pub’ sign. Idiothetic information is generated by the body itself. For example, the brain signals responsible for walking to the pub also provide us with information about how far we’ve walked so far. Path integration uses these idiothetic cues to transverse the mental map in our head. For example, a mouse that is foraging and takes a long, winding trajectory towards its goal will have ‘calculated’ its displacement from its nest and can make a beeline safely back if it suddenly runs into a fox.

                                  mouse integration

                                  Studying path integration is complicated by the fact that it’s only one part of the mechanism behind navigation. It’s an error-prone system, and so it works in combination with other information to create a path - for example, a mouse might use remembered landmarks, olfaction and even way-marking to navigate through an environment. Studying the neurons specifically involved in path integration therefore requires us to remove all other possibilities but using path integration. How do we do that?

                                  pi 1

                                  One way of studying path integration is using virtual reality. Mice run through a VR corridor on a treadmill until there’s a visual cue. If they stop at the visual cue, they get a treat. After a few repetitions, the visual cue is removed - yet the mice still stop in the place where the visual cue would have been. If there are no external cues for the mice to see, how do they know when to stop?

                                  The mice can’t use other navigational strategies, such as beaconing, because there’s no allothetic cues, so they’re left with path integration. They might have remembered the time it took to run to the reward zone - but when the speed of the treadmill was changed, the mice didn’t overshoot the reward zone, despite running faster. This implies they weren’t measuring the time, but were instead getting their information from a collection of self-motion cues. This includes proprioception (the sense of your self-position and self-movement) along with the vestibular system (your inner ear, which provides a sense of balance and awareness of our head and body in space) and motor efference. Over longer distances, the accuracy of this system drops without external input such as landmarks, as small errors start to accumulate and the mice start to stop further away from the reward zone.

                                  pi 1

                                  Cell types

                                  Path integration is just one of the many navigational strategies we want to study to understand the basis of the neural map. There are many specialised cell types involved in navigation. For the purpose of this website, let’s focus on three: place cells, grid cells, and head direction cells.

                                  cell types

                                  Grid cells are place-modulated neurons located primarily in the entorhinal cortex that fire periodically in space, mapping a triangular grid across an environment. As an animal moves through space, grid cells fire to create hexagonal patterns that allow us to map this space. Again, a population of grid cells alone can encode a spatial map

                                  Place cells located in the hippocampus, fire when an animal enters a specific location in space. A population of place cells alone can encode a spatial map.

                                  Head direction cells are primarily found in the postsubiculum, and provide directional information by preferentially firing in specific directions. A population of head direction cells can encode which direction you are facing in your spatial map.

                                  These cells potentially have uses outside of encoding physical space - their coding mechanism may be used for more general problem sets, such as cognitive mapping. Cognitive mapping refers to swapping out the three-dimensional world we interact with for a different, continuous dimension that represents an abstract concept. The same way we might encode the map of our room, we might use the hexagonal-firing properties of grid cells to represent, for example, conceptual spaces, such as hierarchically organizing ideas within our brain, or recording temporal sequences of events.

                                  References

                                  2022

                                  1. Spatial representation by ramping activity of neurons in the retrohippocampal cortex
                                    Sarah A. Tennant ,  Harry Clark ,  Ian Hawes , and 6 more authors
                                    Oct 2022
                                  \ No newline at end of file diff --git a/publications/index.html b/publications/index.html index ca8a9b38abd7..9a5babce248c 100644 --- a/publications/index.html +++ b/publications/index.html @@ -1 +1 @@ - publications | Nolan & Sürmeli Lab

                                  publications

                                  the full list of the lab's publications!

                                  2024

                                  1. Task-anchored grid cell firing is selectively associated with successful path integration-dependent behaviour
                                    Harry Clark ,  and  Matthew F. Nolan
                                    eLife, Mar 2024

                                  2023

                                  1. Excessive proteostasis contributes to pathology in fragile X syndrome
                                    Susana R. Louros ,  Sang S. Seo ,  Beatriz Maio , and 8 more authors
                                    Feb 2023
                                  2. Memory consolidation: Building influence over the entorhinal cortex
                                    Matthew F. Nolan
                                    Nov 2023

                                  2022

                                  1. Telencephalic outputs from the medial entorhinal cortex are copied directly to the hippocampus
                                    Sau Yee Tsoi ,  Merve Öncül ,  Ella Svahn , and 4 more authors
                                    eLife, Feb 2022
                                  2. Single Photon Kilohertz Frame Rate Imaging of Neural Activity
                                    Tian Tian ,  Yifang Yuan ,  Srinjoy Mitra , and 2 more authors
                                    Nov 2022
                                  3. Spatial representation by ramping activity of neurons in the retrohippocampal cortex
                                    Sarah A. Tennant ,  Harry Clark ,  Ian Hawes , and 6 more authors
                                    Oct 2022
                                  4. Fan cells in lateral entorhinal cortex directly influence medial entorhinal cortex through synaptic connections in layer 1
                                    Brianna Vandrey ,  Jack Armstrong ,  Christina M. Brown , and 2 more authors
                                    Dec 2022
                                  5. pyNeurode: a real-time neural signal processing framework
                                    Wing-Kin Tam ,  and  Matthew F. Nolan
                                    Dec 2022
                                    IEEE International Symposium on Circuits and Systems (ISCAS), Austin, TX, MAY 28-JUN 01, 2022

                                  2021

                                  1. Medial septal GABAergic neurons reduce seizure duration upon optogenetic closed-loop stimulation
                                    Katerina Hristova ,  Cristina Martinez-Gonzalez ,  Thomas C. Watson , and 5 more authors
                                    May 2021
                                  2. Deep entorhinal cortex: from circuit organization to spatial cognition and memory
                                    Klara Z. Gerlei ,  Christina M. Brown ,  Gulsen Surmeli , and 1 more author
                                    Nov 2021
                                  3. Medial septal GABAergic neurons reduce seizure duration upon optogenetic closed-loop stimulation (vol 144, pg 1576, 2021)
                                    Katerina Hristova ,  Cristina Martinez-Gonzalez ,  Thomas C. Watson , and 5 more authors
                                    Sep 2021

                                  2020

                                  1. Fan Cells in Layer 2 of the Lateral Entorhinal Cortex Are Critical for Episodic-like Memory
                                    Brianna Vandrey ,  Derek L. F. Garden ,  Veronika Ambrozova , and 3 more authors
                                    Jan 2020
                                  2. Inter- and intra-animal variation in the integrative properties of stellate cells in the medial entorhinal cortex
                                    Hugh Pastoll ,  Derek L. Garden ,  Ioannis Papastathopoulos , and 2 more authors
                                    Feb 2020
                                  3. Grid cells are modulated by local head direction
                                    Klara Gerlei ,  Jessica Passlack ,  Ian Hawes , and 4 more authors
                                    Aug 2020

                                  2018

                                  1. Stellate Cells in the Medial Entorhinal Cortex Are Required for Spatial Learning
                                    Sarah A. Tennant ,  Lukas Fischer ,  Derek L. F. Garden , and 5 more authors
                                    Jan 2018
                                  2. Inferior Olive HCN1 Channels Coordinate Synaptic Integration and Complex Spike Timing
                                    Derek L. F. Garden ,  Marlies Oostland ,  Marta Jelitai , and 3 more authors
                                    Feb 2018

                                  2017

                                  1. Grid cells’ need for speed
                                    Alfredo Gonzalez-Sulser ,  and  Matthew F. Nolan
                                    Jan 2017
                                  2. Active integration of glutamatergic input to the inferior olive generates bidirectional postsynaptic potentials
                                    Derek L. F. Garden ,  Arianna Rinaldi ,  and  Matthew F. Nolan
                                    Feb 2017
                                  3. Synaptic integrative mechanisms for spatial cognition
                                    Christoph Schmidt-Hieber ,  and  Matthew F. Nolan
                                    Nov 2017

                                  2016

                                  1. Local field potentials get funny
                                    Matthew F. Nolan
                                    Jul 2016
                                  2. Molecularly Defined Circuitry Reveals Input-Output Segregation in Deep Layers of the Medial Entorhinal Cortex (vol 88, pg 1040, 2015)
                                    Gulsen Surmeli ,  Daniel Cosmin Marcu ,  Christina McClure , and 3 more authors
                                    Nov 2016
                                  3. Neural mechanisms for spatial computation
                                    Matthew F. Nolan
                                    Nov 2016
                                  4. Continuous attractor network models of grid cell firing based on excitatory-inhibitory interactions
                                    Oliver Shipston-Sharman ,  Lukas Solanka ,  and  Matthew F. Nolan
                                    Nov 2016
                                  5. Flexible theta sequence compression mediated via phase precessing interneurons
                                    Angus Chadwick ,  Mark C. W. Rossum ,  and  Matthew F. Nolan
                                    Dec 2016

                                  2015

                                  1. Independent Theta Phase Coding Accounts for CA1 Population Sequences and Enables Flexible Remapping
                                    Angus Chadwick ,  Mark C. W. Rossum ,  and  Matthew F. Nolan
                                    Feb 2015
                                  2. Laminar and Dorsoventral Molecular Organization of the Medial Entorhinal Cortex Revealed by Large-scale Anatomical Analysis of Gene Expression
                                    Helen L. Ramsden ,  Guelsen Suermeli ,  Steven G. McDonagh , and 1 more author
                                    Jan 2015
                                  3. Noise promotes independent control of gamma oscillations and grid firing within recurrent attractor networks
                                    Lukas Solanka ,  Mark C. W. Rossum ,  and  Matthew F. Nolan
                                    Jul 2015
                                  4. Molecularly Defined Circuitry Reveals Input-Output Segregation in Deep Layers of the Medial Entorhinal Cortex
                                    Gulsen Surmeli ,  Daniel Cosmin Marcu ,  Christina McClure , and 3 more authors
                                    Dec 2015

                                  2014

                                  1. Increased intrinsic excitability of muscle vasoconstrictor preganglionic neurons may contribute to the elevated sympathetic activity in hypertensive rats
                                    Linford J. B. Briant ,  Alexey O. Stalbovskiy ,  Matthew F. Nolan , and 2 more authors
                                    Dec 2014
                                  2. GABAergic Projections from the Medial Septum Selectively Inhibit Interneurons in the Medial Entorhinal Cortex
                                    Alfredo Gonzalez-Sulser ,  Daniel Parthier ,  Antonio Candela , and 5 more authors
                                    Dec 2014

                                  2013

                                  1. Feedback Inhibition Enables Theta-Nested Gamma Oscillations and Grid Firing Fields
                                    Hugh Pastoll ,  Lukas Solanka ,  Mark C. W. Rossum , and 1 more author
                                    Jan 2013
                                  2. Genetic and Functional Modularity of Hox Activities in the Specification of Limb-Innervating Motor Neurons
                                    Julie Lacombe ,  Olivia Hanley ,  Heekyung Jung , and 4 more authors
                                    Jan 2013
                                  3. Prefrontal Cortex HCN1 Channels Enable Intrinsic Persistent Neural Firing and Executive Memory Function
                                    Sebastien J. Thuault ,  Gael Malleret ,  Christine M. Constantinople , and 9 more authors
                                    Aug 2013
                                  4. HCN1 channels in cerebellar Purkinje cells promote late stages of learning and constrain synaptic inhibition
                                    Arianna Rinaldi ,  Cagla Defterali ,  Antoine Mialot , and 3 more authors
                                    Nov 2013

                                  2012

                                  1. Intrinsic electrophysiological properties of entorhinal cortex stellate cells and their contribution to grid cell firing fields
                                    Hugh Pastoll ,  Helen L. Ramsden ,  and  Matthew F. Nolan
                                    Apr 2012

                                  2011

                                  1. Motor Neurons and the Sense of Place
                                    Thomas M. Jessell ,  Gülşen Sürmeli ,  and  John S. Kelly
                                    Neuron, Apr 2011
                                  2. Patterns of Spinal Sensory-Motor Connectivity Prescribed by a Dorsoventral Positional Template
                                    Gülşen Sürmeli ,  Turgay Akay ,  Gregory C. Ippolito , and 2 more authors
                                    Cell, Apr 2011
                                  3. A molecular toolbox for rapid generation of viral vectors to up- or down-regulate neuronal gene expression in vivo
                                    Melanie D. White ,  Ruth V. J. Milne ,  and  Matthew F. Nolan
                                    Apr 2011
                                  4. Tuning of synaptic responses: an organizing principle for optimization of neural circuits
                                    Cian O’Donnell ,  and  Matthew F. Nolan
                                    Feb 2011
                                  5. A Critical Role for Neurofascin in Regulating Action Potential Initiation through Maintenance of the Axon Initial Segment
                                    Barbara Zonta ,  Anne Desmazieres ,  Arianna Rinaldi , and 4 more authors
                                    Mar 2011
                                  6. Dorsal-ventral organization of theta-like activity intrinsic to entorhinal stellate neurons is mediated by differences in stochastic current fluctuations
                                    Paul D. Dodson ,  Hugh Pastoll ,  and  Matthew F. Nolan
                                    Jun 2011
                                  7. Dendritic Spine Dynamics Regulate the Long-Term Stability of Synaptic Plasticity
                                    Cian O’Donnell ,  Matthew F. Nolan ,  and  Mark C. W. Rossum
                                    Nov 2011

                                  2010

                                  1. Stochastic Ion Channel Gating in Dendritic Neurons: Morphology Dependence and Probabilistic Synaptic Activation of Dendritic Spikes
                                    Robert C. Cannon ,  Cian O’Donnell ,  and  Matthew F. Nolan
                                    Aug 2010

                                  2009

                                  1. Stochastically Gating Ion Channels Enable Patterned Spike Firing through Activity-Dependent Modulation of Spike Probability
                                    Joshua T. Dudman ,  and  Matthew F. Nolan
                                    Feb 2009

                                  2008

                                  1. Tuning of Synaptic Integration in the Medial Entorhinal Cortex to the Organization of Grid Cell Firing Fields
                                    Derek L. F. Garden ,  Paul D. Dodson ,  Cian O’Donnell , and 2 more authors
                                    Dec 2008

                                  2007

                                  1. HCN1 channels control resting and active integrative properties of stellate cells from layer II of the entorhinal cortex
                                    Matthew F. Nolan ,  Joshua T. Dudman ,  Paul D. Dodson , and 1 more author
                                    Nov 2007
                                  \ No newline at end of file + publications | Nolan & Sürmeli Labs

                                  publications

                                  the full list of the lab's publications!

                                  2024

                                  1. Task-anchored grid cell firing is selectively associated with successful path integration-dependent behaviour
                                    Harry Clark ,  and  Matthew F. Nolan
                                    eLife, Mar 2024

                                  2023

                                  1. Excessive proteostasis contributes to pathology in fragile X syndrome
                                    Susana R. Louros ,  Sang S. Seo ,  Beatriz Maio , and 8 more authors
                                    Feb 2023
                                  2. Memory consolidation: Building influence over the entorhinal cortex
                                    Matthew F. Nolan
                                    Nov 2023

                                  2022

                                  1. Telencephalic outputs from the medial entorhinal cortex are copied directly to the hippocampus
                                    Sau Yee Tsoi ,  Merve Öncül ,  Ella Svahn , and 4 more authors
                                    eLife, Feb 2022
                                  2. Single Photon Kilohertz Frame Rate Imaging of Neural Activity
                                    Tian Tian ,  Yifang Yuan ,  Srinjoy Mitra , and 2 more authors
                                    Nov 2022
                                  3. Spatial representation by ramping activity of neurons in the retrohippocampal cortex
                                    Sarah A. Tennant ,  Harry Clark ,  Ian Hawes , and 6 more authors
                                    Oct 2022
                                  4. Fan cells in lateral entorhinal cortex directly influence medial entorhinal cortex through synaptic connections in layer 1
                                    Brianna Vandrey ,  Jack Armstrong ,  Christina M. Brown , and 2 more authors
                                    Dec 2022
                                  5. pyNeurode: a real-time neural signal processing framework
                                    Wing-Kin Tam ,  and  Matthew F. Nolan
                                    Dec 2022
                                    IEEE International Symposium on Circuits and Systems (ISCAS), Austin, TX, MAY 28-JUN 01, 2022

                                  2021

                                  1. Medial septal GABAergic neurons reduce seizure duration upon optogenetic closed-loop stimulation
                                    Katerina Hristova ,  Cristina Martinez-Gonzalez ,  Thomas C. Watson , and 5 more authors
                                    May 2021
                                  2. Deep entorhinal cortex: from circuit organization to spatial cognition and memory
                                    Klara Z. Gerlei ,  Christina M. Brown ,  Gulsen Surmeli , and 1 more author
                                    Nov 2021
                                  3. Medial septal GABAergic neurons reduce seizure duration upon optogenetic closed-loop stimulation (vol 144, pg 1576, 2021)
                                    Katerina Hristova ,  Cristina Martinez-Gonzalez ,  Thomas C. Watson , and 5 more authors
                                    Sep 2021

                                  2020

                                  1. Fan Cells in Layer 2 of the Lateral Entorhinal Cortex Are Critical for Episodic-like Memory
                                    Brianna Vandrey ,  Derek L. F. Garden ,  Veronika Ambrozova , and 3 more authors
                                    Jan 2020
                                  2. Inter- and intra-animal variation in the integrative properties of stellate cells in the medial entorhinal cortex
                                    Hugh Pastoll ,  Derek L. Garden ,  Ioannis Papastathopoulos , and 2 more authors
                                    Feb 2020
                                  3. Grid cells are modulated by local head direction
                                    Klara Gerlei ,  Jessica Passlack ,  Ian Hawes , and 4 more authors
                                    Aug 2020

                                  2018

                                  1. Stellate Cells in the Medial Entorhinal Cortex Are Required for Spatial Learning
                                    Sarah A. Tennant ,  Lukas Fischer ,  Derek L. F. Garden , and 5 more authors
                                    Jan 2018
                                  2. Inferior Olive HCN1 Channels Coordinate Synaptic Integration and Complex Spike Timing
                                    Derek L. F. Garden ,  Marlies Oostland ,  Marta Jelitai , and 3 more authors
                                    Feb 2018

                                  2017

                                  1. Grid cells’ need for speed
                                    Alfredo Gonzalez-Sulser ,  and  Matthew F. Nolan
                                    Jan 2017
                                  2. Active integration of glutamatergic input to the inferior olive generates bidirectional postsynaptic potentials
                                    Derek L. F. Garden ,  Arianna Rinaldi ,  and  Matthew F. Nolan
                                    Feb 2017
                                  3. Synaptic integrative mechanisms for spatial cognition
                                    Christoph Schmidt-Hieber ,  and  Matthew F. Nolan
                                    Nov 2017

                                  2016

                                  1. Local field potentials get funny
                                    Matthew F. Nolan
                                    Jul 2016
                                  2. Molecularly Defined Circuitry Reveals Input-Output Segregation in Deep Layers of the Medial Entorhinal Cortex (vol 88, pg 1040, 2015)
                                    Gulsen Surmeli ,  Daniel Cosmin Marcu ,  Christina McClure , and 3 more authors
                                    Nov 2016
                                  3. Neural mechanisms for spatial computation
                                    Matthew F. Nolan
                                    Nov 2016
                                  4. Continuous attractor network models of grid cell firing based on excitatory-inhibitory interactions
                                    Oliver Shipston-Sharman ,  Lukas Solanka ,  and  Matthew F. Nolan
                                    Nov 2016
                                  5. Flexible theta sequence compression mediated via phase precessing interneurons
                                    Angus Chadwick ,  Mark C. W. Rossum ,  and  Matthew F. Nolan
                                    Dec 2016

                                  2015

                                  1. Independent Theta Phase Coding Accounts for CA1 Population Sequences and Enables Flexible Remapping
                                    Angus Chadwick ,  Mark C. W. Rossum ,  and  Matthew F. Nolan
                                    Feb 2015
                                  2. Laminar and Dorsoventral Molecular Organization of the Medial Entorhinal Cortex Revealed by Large-scale Anatomical Analysis of Gene Expression
                                    Helen L. Ramsden ,  Guelsen Suermeli ,  Steven G. McDonagh , and 1 more author
                                    Jan 2015
                                  3. Noise promotes independent control of gamma oscillations and grid firing within recurrent attractor networks
                                    Lukas Solanka ,  Mark C. W. Rossum ,  and  Matthew F. Nolan
                                    Jul 2015
                                  4. Molecularly Defined Circuitry Reveals Input-Output Segregation in Deep Layers of the Medial Entorhinal Cortex
                                    Gulsen Surmeli ,  Daniel Cosmin Marcu ,  Christina McClure , and 3 more authors
                                    Dec 2015

                                  2014

                                  1. Increased intrinsic excitability of muscle vasoconstrictor preganglionic neurons may contribute to the elevated sympathetic activity in hypertensive rats
                                    Linford J. B. Briant ,  Alexey O. Stalbovskiy ,  Matthew F. Nolan , and 2 more authors
                                    Dec 2014
                                  2. GABAergic Projections from the Medial Septum Selectively Inhibit Interneurons in the Medial Entorhinal Cortex
                                    Alfredo Gonzalez-Sulser ,  Daniel Parthier ,  Antonio Candela , and 5 more authors
                                    Dec 2014

                                  2013

                                  1. Feedback Inhibition Enables Theta-Nested Gamma Oscillations and Grid Firing Fields
                                    Hugh Pastoll ,  Lukas Solanka ,  Mark C. W. Rossum , and 1 more author
                                    Jan 2013
                                  2. Genetic and Functional Modularity of Hox Activities in the Specification of Limb-Innervating Motor Neurons
                                    Julie Lacombe ,  Olivia Hanley ,  Heekyung Jung , and 4 more authors
                                    Jan 2013
                                  3. Prefrontal Cortex HCN1 Channels Enable Intrinsic Persistent Neural Firing and Executive Memory Function
                                    Sebastien J. Thuault ,  Gael Malleret ,  Christine M. Constantinople , and 9 more authors
                                    Aug 2013
                                  4. HCN1 channels in cerebellar Purkinje cells promote late stages of learning and constrain synaptic inhibition
                                    Arianna Rinaldi ,  Cagla Defterali ,  Antoine Mialot , and 3 more authors
                                    Nov 2013

                                  2012

                                  1. Intrinsic electrophysiological properties of entorhinal cortex stellate cells and their contribution to grid cell firing fields
                                    Hugh Pastoll ,  Helen L. Ramsden ,  and  Matthew F. Nolan
                                    Apr 2012

                                  2011

                                  1. Motor Neurons and the Sense of Place
                                    Thomas M. Jessell ,  Gülşen Sürmeli ,  and  John S. Kelly
                                    Neuron, Apr 2011
                                  2. Patterns of Spinal Sensory-Motor Connectivity Prescribed by a Dorsoventral Positional Template
                                    Gülşen Sürmeli ,  Turgay Akay ,  Gregory C. Ippolito , and 2 more authors
                                    Cell, Apr 2011
                                  3. A molecular toolbox for rapid generation of viral vectors to up- or down-regulate neuronal gene expression in vivo
                                    Melanie D. White ,  Ruth V. J. Milne ,  and  Matthew F. Nolan
                                    Apr 2011
                                  4. Tuning of synaptic responses: an organizing principle for optimization of neural circuits
                                    Cian O’Donnell ,  and  Matthew F. Nolan
                                    Feb 2011
                                  5. A Critical Role for Neurofascin in Regulating Action Potential Initiation through Maintenance of the Axon Initial Segment
                                    Barbara Zonta ,  Anne Desmazieres ,  Arianna Rinaldi , and 4 more authors
                                    Mar 2011
                                  6. Dorsal-ventral organization of theta-like activity intrinsic to entorhinal stellate neurons is mediated by differences in stochastic current fluctuations
                                    Paul D. Dodson ,  Hugh Pastoll ,  and  Matthew F. Nolan
                                    Jun 2011
                                  7. Dendritic Spine Dynamics Regulate the Long-Term Stability of Synaptic Plasticity
                                    Cian O’Donnell ,  Matthew F. Nolan ,  and  Mark C. W. Rossum
                                    Nov 2011

                                  2010

                                  1. Stochastic Ion Channel Gating in Dendritic Neurons: Morphology Dependence and Probabilistic Synaptic Activation of Dendritic Spikes
                                    Robert C. Cannon ,  Cian O’Donnell ,  and  Matthew F. Nolan
                                    Aug 2010

                                  2009

                                  1. Stochastically Gating Ion Channels Enable Patterned Spike Firing through Activity-Dependent Modulation of Spike Probability
                                    Joshua T. Dudman ,  and  Matthew F. Nolan
                                    Feb 2009

                                  2008

                                  1. Tuning of Synaptic Integration in the Medial Entorhinal Cortex to the Organization of Grid Cell Firing Fields
                                    Derek L. F. Garden ,  Paul D. Dodson ,  Cian O’Donnell , and 2 more authors
                                    Dec 2008

                                  2007

                                  1. HCN1 channels control resting and active integrative properties of stellate cells from layer II of the entorhinal cortex
                                    Matthew F. Nolan ,  Joshua T. Dudman ,  Paul D. Dodson , and 1 more author
                                    Nov 2007
                                  \ No newline at end of file diff --git a/research/index.html b/research/index.html index 9c3068c9678f..e54ba1c1239e 100644 --- a/research/index.html +++ b/research/index.html @@ -1 +1 @@ - research | Nolan & Sürmeli Lab

                                  research

                                  We aim to understand the cellular and molecular basis for computations that underlie episodic memory.

                                  \ No newline at end of file + research | Nolan & Sürmeli Labs

                                  research

                                  We aim to understand the cellular and molecular basis for computations that underlie episodic memory.

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\ No newline at end of file diff --git a/surmeli-lab/index.html b/surmeli-lab/index.html index a11eebfbd3d9..acfa1acb2042 100644 --- a/surmeli-lab/index.html +++ b/surmeli-lab/index.html @@ -1 +1 @@ - Sürmeli lab | Nolan & Sürmeli Lab

                                  Sürmeli lab

                                  PI

                                  people/gulsen.jpg
                                  Gülşen Sürmeli

                                  We are looking for talented students and post-docs with a passion for scientific discovery. Please contact me via email to find out what opportunities there are to join the lab.

                                  Postdocs

                                  people/sara.jpeg
                                  Sara Gomez-Arnaiz

                                  PhD Students

                                  people/daniel.jpeg
                                  Daniel Lewis-Fallows

                                  Simons Initiative for the Developing Brain


                                  people/fill.png
                                  Edward Agboraw

                                  Precision Medicine Doctoral Training Programme


                                  people/jinghua.jpg
                                  Jinghua Yang

                                  people/max.jpg
                                  Max Knops

                                  Simons Initiative for the Developing Brain


                                  people/raf.jpeg
                                  Rafael Lemarchand

                                  Wellcome Trust Translational Neuroscience Program


                                  people/sau.jpeg
                                  Sau Yee Tsoi

                                  EASTBIO Doctoral Program


                                  \ No newline at end of file + Sürmeli lab | Nolan & Sürmeli Labs

                                  Sürmeli lab

                                  PI

                                  people/gulsen.jpg
                                  Gülşen Sürmeli

                                  We are looking for talented students and post-docs with a passion for scientific discovery. Please contact me via email to find out what opportunities there are to join the lab.

                                  Postdocs

                                  people/sara.jpeg
                                  Sara Gomez-Arnaiz

                                  PhD Students

                                  people/daniel.jpeg
                                  Daniel Lewis-Fallows

                                  Simons Initiative for the Developing Brain


                                  people/fill.png
                                  Edward Agboraw

                                  Precision Medicine Doctoral Training Programme


                                  people/jinghua.jpg
                                  Jinghua Yang

                                  people/max.jpg
                                  Max Knops

                                  Simons Initiative for the Developing Brain


                                  people/raf.jpeg
                                  Rafael Lemarchand

                                  Wellcome Trust Translational Neuroscience Program


                                  people/sau.jpeg
                                  Sau Yee Tsoi

                                  EASTBIO Doctoral Program


                                  \ No newline at end of file