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Build tool to write/update MassBank records to database #10

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7 tasks done
uly55e5 opened this issue Jan 30, 2023 · 0 comments
Open
7 tasks done

Build tool to write/update MassBank records to database #10

uly55e5 opened this issue Jan 30, 2023 · 0 comments
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@uly55e5
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enhancement New feature or request

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@uly55e5
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uly55e5 commented Jan 30, 2023 •
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Build a command line tool to create or update the MassBank database from an existing directory containing the MassBank records or from a commit to a MassBank data git repository. The arguments (database connection, source, ...) can be passed by environment variables or command line arguments.

Tasks

  • create database schema
  • create database from MassBank directory
  • create database from MassBank-data git repository
  • update existing database
  • write metadata to database
  • read environment variables
  • read command line arguments
@uly55e5 uly55e5 added the enhancement New feature or request label Jan 30, 2023
@uly55e5 uly55e5 self-assigned this Jan 30, 2023
uly55e5 pushed a commit that referenced this issue Jan 30, 2023
#10 Build tool to write/update MassBank records to database
d75c80e 
- db connection
uly55e5 pushed a commit that referenced this issue Feb 1, 2023
#10 add environment variables and command line arguments to DB tool
3abf011
uly55e5 pushed a commit that referenced this issue Feb 1, 2023
#10 add reading files to database update tool
3f3b254
uly55e5 pushed a commit that referenced this issue Feb 1, 2023
#10 deleted temp data
e42703f
uly55e5 pushed a commit that referenced this issue Feb 2, 2023
#10 refactor some minor issues
bb34b03
uly55e5 pushed a commit that referenced this issue Feb 2, 2023
#10 new openapi generator version 6.3.0
3fe1e6a
uly55e5 pushed a commit that referenced this issue Feb 2, 2023
#10 add missing error handling
5293dd0
uly55e5 pushed a commit that referenced this issue Feb 6, 2023
#10 add page parameter to query filters
4629662
uly55e5 pushed a commit that referenced this issue Feb 6, 2023
#10 add files to database
e7d96f8
uly55e5 pushed a commit that referenced this issue Feb 6, 2023
#10 implement upsert for existing database
890efc3
uly55e5 pushed a commit that referenced this issue Feb 8, 2023
#10 add metadata to database
0a388d7
uly55e5 pushed a commit that referenced this issue Feb 8, 2023
#10 add some documentation for DB tool
81ceb49
uly55e5 pushed a commit that referenced this issue Feb 13, 2023
#10 add database creation to docker debug files
066dcbb
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10-Build-tool-to-write/update-MassBank-records-to-database MassBank/MassBank3
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