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Hello, thanks for this awesome and fast tool! I am new to edlib and would like to understand alignment results better as I didn't find a good example here
To Reproduce
import edlib
query = 'AAGGATTACT' # ligation barcode
target = 'AAGGATTACNT' # read sequence - I added a 'N' at the end before 'T'
edlib.align(query, target, mode='SHW', task='path')
The above results show three end locations and I assume they are in deletion, mismatch, and insertion order. But the cigar results only show the case for insertion.
In my real-world problem, the mismatches are having more chances than indels. So is there any plan to solve this problem or did I miss any information to achieve this?
Environment (please complete the following information):
OS: Debian
Version Python 3.7.12
% pip show edlib
Name: edlib
Version: 1.3.9
The text was updated successfully, but these errors were encountered:
Hello, thanks for this awesome and fast tool! I am new to edlib and would like to understand alignment results better as I didn't find a good example here
To Reproduce
Results
Expected behavior
The above results show three end locations and I assume they are in deletion, mismatch, and insertion order. But the
cigar
results only show the case for insertion.In my real-world problem, the mismatches are having more chances than indels. So is there any plan to solve this problem or did I miss any information to achieve this?
Environment (please complete the following information):
The text was updated successfully, but these errors were encountered: