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TEST_Cavium_annotation_small.gbk
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TEST_Cavium_annotation_small.gbk
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LOCUS NZ_CP006571 1020 bp DNA circular CON 15-AUG-2015
DEFINITION Chlamydia avium 10DC88, complete genome.
ACCESSION NZ_CP006571
VERSION NZ_CP006571.1 GI:753800349
DBLINK BioProject: PRJNA224116
BioSample: SAMN02216823
Assembly: GCF_000583875.1
KEYWORDS RefSeq.
SOURCE Chlamydia avium 10DC88
ORGANISM Chlamydia avium 10DC88
Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
Chlamydia/Chlamydophila group; Chlamydia.
REFERENCE 1 (bases 1 to 1041170)
AUTHORS Sachse,K., Laroucau,K., Riege,K., Wehner,S., Dilcher,M.,
Creasy,H.H., Weidmann,M., Myers,G., Vorimore,F., Vicari,N.,
Magnino,S., Liebler-Tenorio,E., Ruettger,A., Bavoil,P.M.,
Hufert,F.T., Rossello-Mora,R. and Marz,M.
TITLE Evidence for the existence of two new members of the family
Chlamydiaceae and proposal of Chlamydia avium sp. nov. and
Chlamydia gallinacea sp. nov
JOURNAL Syst. Appl. Microbiol. 37 (2), 79-88 (2014)
PUBMED 24461712
REFERENCE 2 (bases 1 to 1041170)
AUTHORS Sachse,K.
TITLE Direct Submission
JOURNAL Submitted (03-JUL-2013) Institute of Molecular Pathogenesis,
Friedrich-Loeffler-Institut (Federal Research Institute for Animal
Health), Naumburger Str, 96a, Jena 07743, Germany
COMMENT REFSEQ INFORMATION: The reference sequence was derived from
CP006571.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 08/15/2015 19:28:39
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference
protein set; GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA;
ncRNA; repeat_region
Genes :: 944
CDS :: 836
Pseudo Genes :: 65
rRNAs :: 1, 1, 1 ( 5S, 16S, 23S )
complete rRNAs :: 1, 1, 1 ( 5S, 16S, 23S )
tRNAs :: 39
ncRNA :: 1
Frameshifted Genes :: 58
Frameshifted Genes On Monomer Runs :: 4
Frameshifted Genes Not On Monomer Runs :: 3
##Genome-Annotation-Data-END##
##Genome-Assembly-Data-START##
Assembly Method :: GS De Novo Assembler v. 2.6; SeqMan NGen
v. 4.0.1; SeqMan Pro v. 9.1.0
Genome Coverage :: 33
Sequencing Technology :: 454
##Genome-Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7006
/organism="Chlamydia avium 10DC88"
/mol_type="genomic DNA"
/strain="10DC88"
/isolate="10DC88"
/isolation_source="spleen tissue from parrot (Polytelis)"
/host="Polytelis"
/culture_collection="DSM:27005"
/db_xref="taxon:1229831"
/chromosome="Chlamydia_sp_10DC88"
/country="Germany: Arnsberg, North Rhine-Westphalia"
/collection_date="12-Apr-2010"
/collected_by="Dr. Jochen Kilwinski"
gene complement(join(6666..7006,1..2168))
/locus_tag="RT28_RS00005"
/pseudo
CDS complement(join(6666..7006,1..2168))
/locus_tag="RT28_RS00005"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_020355873.1"
/exception="annotated by transcript or proteomic data"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
repeat_region 16..197
gene 2682..4016
/locus_tag="RT28_RS00010"
/old_locus_tag="M832_00020"
CDS 2682..4016
/locus_tag="RT28_RS00010"
/old_locus_tag="M832_00020"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_020359202.1"
/product="delta-aminolevulinic acid dehydratase"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/protein_id="WP_038499930.1"
/db_xref="GI:740714643"
/translation="MLSVEVFGGCTLQGSVRVSGAKNSTTKLLVASLLSDRKCVLRNV
PDIGDVRLTVELCQSLGSLVLWDKQEEVIEIQTPTIQLTQVPAQFSRVNRVPILLLGA
LLARCPEGIQVPCIGGDAIGERSLNFHLEGLEKLGAQISYDEEEERYFAKAPQGLVGA
YVTLPYPSVGATENLILAAVRAQGRTIIKNAALEVEILDLILFLQKAGVEITAGNDRT
IEIFGCKDFHEVNHWIIPDKIEAASFGMAAVVTGGRVFVENAVQDTMIPFLKVLRSLG
GGFSVLDNGIEFFYDGPLQGGVVLETDVHPGFVTDWQQPFSVLLSQAQGSSVIHETVH
ENRLGYLQGLQDMGASCQLFYQCLSSKTCRYSTGNFPHSAVIHGATSLKAAHLVIPDL
RAGFAYIMAALIARGGASIIDNVEILDRGYSNWMEKLRALGAQIQLVEPAML"
gene complement(4011..5702)
/locus_tag="RT28_RS00015"
/old_locus_tag="M832_00030"
CDS complement(4011..5702)
/locus_tag="RT28_RS00015"
/old_locus_tag="M832_00030"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_020355877.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="acyltransferase"
/protein_id="WP_038499933.1"
/db_xref="GI:740714646"
/translation="MPTLLSFLSSLCTTAIHSAFPQITEISPDITQSTKDLFGHYQCN
DAMKLARTLKMPPKAIAEAIVQYIPQEAFSSIEIAGAGFINFTFSKRFLSDALETFSK
NLCQGFRVAYPQKVVIDFSSPNIAKDMHVGHLRSTIIGDCLARVFAFVGHEVIRLNHI
GDWGTAFGMLITYLQEESSQDIQNLEDLTELYKKAYTCFSQNEDFKKRSQNSVVALQS
GDPQALALWKSICEISEKEFQKIYTILDITIEKRGESFYNPLLPEIIQDLENKNLITI
SDNAKCVFHEGSPIPLIVQKSDGGYNYATTDLAAMRYRIQQDHADRIIIVTDLGQSLH
FQLIEATSLAAGYLPHKGVFSHVGFGLVLDSTGKKFKTRSGDNIKLKELLDASIDQAK
ATLKKHRPDMSDEEIIERAPILGINAIKYADLSSHRTNDYVFSFEKMLRFEGNTALFL
LYAYVRIQGIKRRLGISQLSLEATANIQEPSEEALAVALLRFPEAIKDTLTSLCPHML
TDYLYTLINKFNAFFRDCHIIGSPYQKERLYLCALVEKTLETGMHLLGLRTLDKL"
gene complement(5712..6359)
/locus_tag="RT28_RS00020"
/old_locus_tag="M832_00040"
CDS complement(5712..6359)
/locus_tag="RT28_RS00020"
/old_locus_tag="M832_00040"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_020355878.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="acyltransferase"
/protein_id="WP_020355878.1"
/db_xref="GI:520949403"
/translation="MIFTICKFFTRVIFFLFYRLKTYGVKKNLIKGAAIVAANHNSYF
DPIAIELSVRGCLYHLARSTLFSNPIVSWLQKQWGCYPIKRGEGNAGAFKAASHLFKK
QKKLIIYPEGERSPTGELLPGKIGVGLMAIKTGVPVIPVYIGGTYDIFNRHQKFPKLW
KTITCVFGTPLTFNDLINNDSINKKEAYQIATDRIMQKIAELKSWYENGCIDEVP"
gene complement(6356..7006)
/locus_tag="RT28_RS00025"
/old_locus_tag="M832_00050"
ORIGIN
1 atgagttcct tagggttgct tagacggccg cgtagaaata ggaaaactaa agctatcaga
61 gatctagtag cagaaacttg cttacttccc caagatttta tttgtccttt ttttattaaa
121 gaggggaaga atcttaagga ggaaatccct actcttccac aagtataccg atggagcctg
181 gatctcttac ttaaagagat cgaaagatta tgtttattag gtctacgtgc tgttattcta
241 tttcctgtaa ttccagatca tttaaaagat gcctatggtt cctactcttc gaatcctaaa
301 aacattttgt gtcgaggtat ttttgagatt aagaaagcct ttcctcatct atgtgtaatc
361 agtgatattg ctttggatcc ttatactact catggtcatg atggtatttt agatttagac
421 actggtgagg ttcttaatga tgaaagtgta agaatatttg gaaatatcgc aactttacat
481 gcagaaatgg gggtagatat tgttgctcct agtgatatga tggatgggag agtatcttat
541 attcgttcta tgttagatca gtcaggttgg cgccaagttt tgattctttc ttatagtgtt
601 aaatatgctt cttctttgta cagtcctttt cgggatgctt taggctctca tgtgcaacta
661 ggggataaat gtaattatca aatgaaccca acaaatgttt tagaagcttt gttagagtgt
721 tctttagatg aacaggaggg ggcagatata ttaatgatca aacccgcagg attttatctt
781 gatgttttac atcgtgtacg tcagaacacg acattacctt tagctgctta ccaggtgagt
841 ggggaatact ctatgatagc agcagcctcc acattagggg gaggggataa agaggctata
901 ttatatgaat ccttgatagc aattaaacgt tctggagctg atatggtgat ttcttatgga
961 acgcctagga tattagaaat gctatctcaa tagtagttat agttctttga agaactattt
//