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azure-pipelines.yml
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azure-pipelines.yml
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trigger:
# start a new build for every push
batch: False
branches:
include:
- 'main'
- 'maint/*'
pr:
branches:
include:
- '*' # must quote since "*" is a YAML reserved character; we want a string
stages:
- stage: Check
jobs:
- job: Skip
pool:
vmImage: 'ubuntu-18.04'
variables:
DECODE_PERCENTS: 'false'
RET: 'true'
steps:
- bash: |
git_log=`git log --max-count=1 --skip=1 --pretty=format:"%s"`
echo "##vso[task.setvariable variable=log]$git_log"
- bash: echo "##vso[task.setvariable variable=RET]false"
condition: or(contains(variables.log, '[skip azp]'), contains(variables.log, '[azp skip]'), contains(variables.log, '[skip ci]'), contains(variables.log, '[ci skip]'))
- bash: echo "##vso[task.setvariable variable=start_main;isOutput=true]$RET"
name: result
- stage: Main
condition: and(succeeded(), eq(dependencies.Check.outputs['Skip.result.start_main'], 'true'))
dependsOn: Check
variables:
AZURE_CI: 'true'
jobs:
- job: Style
pool:
vmImage: 'ubuntu-18.04'
variables:
PYTHON_VERSION: '3.8'
PYTHON_ARCH: 'x64'
steps:
- bash: echo $(COMMIT_MSG)
- task: UsePythonVersion@0
inputs:
versionSpec: $(PYTHON_VERSION)
architecture: $(PYTHON_ARCH)
addToPath: true
displayName: 'Get Python'
- bash: |
set -e
python -m pip install --upgrade pip setuptools
python -m pip install numpy scipy matplotlib -r requirements_testing.txt
displayName: Install dependencies
condition: always()
- bash: |
make pydocstyle
displayName: make pydocstyle
condition: always()
- bash: |
make docstring
displayName: make docstring
- bash: |
make nesting
displayName: make nesting
condition: always()
- bash: |
make check-manifest
displayName: make check-manifest
condition: always()
- bash: |
make check-readme
displayName: make check-readme
condition: always()
- job: Ultraslow
pool:
vmImage: 'ubuntu-18.04'
variables:
DISPLAY: ':99'
OPENBLAS_NUM_THREADS: '1'
steps:
- bash: |
sudo apt install libxkbcommon-x11-0 xvfb tcsh libxcb*
displayName: 'Install Ubuntu dependencies'
- bash: |
source tools/get_minimal_commands.sh
displayName: 'Install minimal commands'
- bash: |
echo $PATH
mne_surf2bem --version
fsl_rigid_register --version
displayName: 'Test minimal commands'
- task: UsePythonVersion@0
inputs:
versionSpec: '3.7'
architecture: 'x64'
addToPath: true
displayName: 'Get Python'
- bash: |
/sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render -noreset;
displayName: 'Spin up Xvfb'
- bash: |
set -e
python -m pip install --upgrade pip setuptools
python -m pip install --upgrade numpy scipy vtk -r requirements.txt -r requirements_testing.txt codecov
displayName: 'Install dependencies with pip'
- bash: source tools/get_testing_version.sh
displayName: 'Get testing version'
- task: Cache@2
inputs:
key: $(testing_version)
path: /home/vsts/mne_data
displayName: 'Cache testing data'
- script: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
displayName: 'Get test data'
- script: pytest -m "ultraslowtest" --tb=short --cov=mne -vv mne
displayName: 'Run ultraslow tests'
- script: codecov --root $BUILD_REPOSITORY_LOCALPATH -t $CODECOV_TOKEN
displayName: 'Codecov'
env:
CODECOV_TOKEN: $(CODECOV_TOKEN)
condition: succeededOrFailed()
- task: PublishTestResults@2
inputs:
testResultsFiles: 'junit-*.xml'
testRunTitle: 'Publish test results for $(Agent.JobName)'
failTaskOnFailedTests: true
condition: succeededOrFailed()
- job: Notebook
pool:
vmImage: 'ubuntu-18.04'
steps:
- bash: |
set -e
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh --progress=dot:mega
bash miniconda.sh -b -p ~/miniconda
source ~/miniconda/etc/profile.d/conda.sh
conda activate base
conda env update --file server_environment.yml
pip uninstall -yq mne
pip install -ve .
pip install pytest pytest-cov pytest-timeout pytest-sugar pytest-xdist flake8 codecov
echo "##vso[task.setvariable variable=PATH]${PATH}"
echo "##vso[task.setvariable variable=LD_LIBRARY_PATH]${LD_LIBRARY_PATH}"
displayName: 'Install dependencies'
- script: mne sys_info
displayName: 'Print config and test access to commands'
- bash: source tools/get_testing_version.sh
displayName: 'Get testing version'
- task: Cache@2
inputs:
key: $(testing_version)
path: /home/vsts/mne_data
displayName: 'Cache testing data'
- script: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
displayName: 'Get test data'
- script: pytest --tb=short --cov=mne -vv mne/viz
displayName: 'Run viz tests'
- script: codecov --root $BUILD_REPOSITORY_LOCALPATH -t $CODECOV_TOKEN
displayName: 'Codecov'
env:
CODECOV_TOKEN: $(CODECOV_TOKEN)
condition: succeededOrFailed()
- task: PublishTestResults@2
inputs:
testResultsFiles: 'junit-*.xml'
testRunTitle: 'Publish test results for $(Agent.JobName)'
failTaskOnFailedTests: true
condition: succeededOrFailed()
- job: Windows
pool:
vmImage: 'VS2017-Win2016'
variables:
MNE_LOGGING_LEVEL: 'warning'
MNE_FORCE_SERIAL: 'true'
OPENBLAS_NUM_THREADS: 1
PYTHONUNBUFFERED: 1
PYTHONIOENCODING: 'utf-8'
AZURE_CI_WINDOWS: 'true'
PYTHON_ARCH: 'x64'
strategy:
maxParallel: 4
matrix:
3.7 conda:
PLATFORM: 'x86-64'
TEST_MODE: 'conda'
PYTHON_VERSION: '3.8'
3.7 pip:
TEST_MODE: 'pip'
PYTHON_VERSION: '3.7'
3.8 pip pre:
TEST_MODE: 'pip-pre'
PYTHON_VERSION: '3.8'
OPENBLAS_CORETYPE: 'prescott' # workaround for https://github.com/numpy/numpy/issues/16913
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: $(PYTHON_VERSION)
architecture: $(PYTHON_ARCH)
addToPath: true
condition: in(variables['TEST_MODE'], 'pip', 'pip-pre')
displayName: 'Get Python'
# https://docs.microsoft.com/en-us/azure/devops/pipelines/ecosystems/anaconda
# https://github.com/MicrosoftDocs/pipelines-anaconda
# Qt 5.9 post-link failure:
# https://github.com/ContinuumIO/anaconda-issues/issues/10949
- script: echo "##vso[task.prependpath]%CONDA%;%CONDA%\condabin;%CONDA%\Scripts;%CONDA%\Library\bin;%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;"
condition: in(variables['TEST_MODE'], 'conda')
displayName: Add conda to PATH, deal with Qt 5.9 bug
- bash: |
set -e
git clone --depth 1 git://github.com/pyvista/gl-ci-helpers.git
powershell gl-ci-helpers/appveyor/install_opengl.ps1
displayName: Install OpenGL
- bash: |
set -e
./tools/azure_dependencies.sh
condition: in(variables['TEST_MODE'], 'pip', 'pip-pre')
displayName: 'Install dependencies with pip'
- powershell: |
Set-StrictMode -Version Latest
$ErrorActionPreference = "Stop"
$PSDefaultParameterValues['*:ErrorAction']='Stop'
conda update -n base -c defaults conda
conda env update --name base --file environment.yml
pip uninstall -yq mne
pip install -r requirements_testing.txt codecov
condition: eq(variables['TEST_MODE'], 'conda')
displayName: 'Install dependencies with conda'
- script: python setup.py develop
displayName: 'Install MNE-Python dev'
- script: mne sys_info
displayName: 'Print config and test access to commands'
- script: python -c "import numpy; numpy.show_config()"
displayName: Print NumPy config
- bash: source tools/get_testing_version.sh
displayName: 'Get testing version'
- task: Cache@2
inputs:
key: $(testing_version)
path: C:\Users\VssAdministrator\mne_data
displayName: 'Cache testing data'
- script: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
displayName: 'Get test data'
- script: pytest -m "not slowtest" --tb=short --cov=mne -vv mne
displayName: 'Run tests'
- script: codecov --root %BUILD_REPOSITORY_LOCALPATH% -t %CODECOV_TOKEN%
displayName: 'Codecov'
env:
CODECOV_TOKEN: $(CODECOV_TOKEN)
condition: succeededOrFailed()
- task: PublishTestResults@2
inputs:
testResultsFiles: 'junit-*.xml'
testRunTitle: 'Publish test results for $(Agent.JobName) $(TEST_MODE) $(PYTHON_VERSION)'
failTaskOnFailedTests: true
condition: succeededOrFailed()