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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
requires-python = ">=3.7"
name = "trapi-predict-kit"
description = "A package to help create and deploy Translator Reasoner APIs (TRAPI) from any prediction model exposed as a regular python function."
readme = "README.md"
license = { file = "LICENSE.txt" }
authors = [
{ name = "Vincent Emonet", email = "[email protected]" },
]
maintainers = [
{ name = "Vincent Emonet", email = "[email protected]" },
]
keywords = [
"Python",
]
classifiers = [
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
]
dynamic = ["version"]
dependencies = [
"requests >=2.23.0",
"pydantic >=1.9",
"fastapi >=0.68.1",
"rdflib >=6.1.1",
"reasoner-pydantic >=3.0.1",
# "mlem",
"dvc",
"bmt",
# "fairworkflows @ git+https://github.com/vemonet/fairworkflows.git",
# "SPARQLWrapper >=2.0.0,<3.0.0",
]
[project.optional-dependencies]
opentelemetry = [
"opentelemetry-sdk",
"opentelemetry-exporter-otlp-proto-http",
"opentelemetry-exporter-jaeger",
"opentelemetry-instrumentation-fastapi",
"opentelemetry-instrumentation-httpx",
"opentelemetry-instrumentation-requests",
]
web = [
"uvicorn >=0.15.0",
"gunicorn >=20.0.4",
]
test = [
"pytest >=7.1.3",
"pytest-cov >=3.0.0",
"pre-commit",
"mypy >=0.991",
"scikit-learn",
"pandas",
"httpx",
"reasoner-validator",
"types-requests",
]
doc = [
"mkdocs >=1.4.2",
"mkdocs-material >=8.2.7",
"mkdocstrings[python] >=0.19.1",
"mdx-include >=1.4.1",
"mkdocs-markdownextradata-plugin >=0.2.5",
]
[project.urls]
Homepage = "https://github.com/MaastrichtU-IDS/trapi-predict-kit"
Documentation = "https://github.com/MaastrichtU-IDS/trapi-predict-kit"
History = "https://github.com/MaastrichtU-IDS/trapi-predict-kit/releases"
Tracker = "https://github.com/MaastrichtU-IDS/trapi-predict-kit/issues"
Source = "https://github.com/MaastrichtU-IDS/trapi-predict-kit"
# ENVIRONMENTS AND SCRIPTS
[tool.hatch.envs.default]
features = [
"test",
"web",
"doc",
"opentelemetry",
]
post-install-commands = [
"pre-commit install",
]
[tool.hatch.envs.default.scripts]
dev = "uvicorn tests.dev:app --reload {args}"
fmt = [
"pre-commit run --all --all-files",
]
test = [
"fmt",
"pytest {args}",
# "mypy",
]
cov = [
"fmt",
"pytest --cov-report html {args}",
"python -c 'import webbrowser; webbrowser.open(\"http://0.0.0.0:3000\")'",
"python -m http.server 3000 --directory ./htmlcov",
]
docs = "mkdocs serve -a localhost:8001 {args}"
# TOOLS
[tool.hatch.build.targets.wheel]
packages = ["src/trapi_predict_kit"]
[tool.hatch.version]
path = "src/trapi_predict_kit/__init__.py"
# [tool.hatch.metadata]
# allow-direct-references = true
[tool.coverage.run]
source = ["src"]
branch = true
[tool.coverage.report]
omit = ["tests/*"]
[tool.mypy]
files = ["src/"]
strict = false
implicit_reexport = true
follow_imports = "normal"
ignore_missing_imports = true
pretty = true
show_column_numbers = true
warn_no_return = true
warn_unused_ignores = true
warn_redundant_casts = true
disallow_untyped_calls = true
disallow_untyped_defs = true
disallow_any_generics = false
[tool.pytest.ini_options]
addopts = [
"-vvv",
"--cov=src",
"--color=yes",
"--cov-report=term-missing",
]
filterwarnings = [
"ignore::DeprecationWarning:httpx.*:"
]
[tool.black]
color = true
line-length = 120
target-version = ['py38']
skip-string-normalization = false
# https://github.com/charliermarsh/ruff#supported-rules
[tool.ruff]
src = ["src", "tests"]
target-version = "py38"
line-length = 120
select = [
"I", # isort
"N", # pep8-naming
"S", # bandit
"A", # flake8-builtins
"YTT", # flake8-2020
"B", # flake8-bugbear
"C", # flake8-comprehensions
"ICN", # flake8-import-conventions
"SIM", # flake8-simplify
"TID", # flake8-tidy-imports
"Q", # flake8-quotes
# "FBT", # flake8-boolean-trap
"F", # pyflakes
"UP", # pyupgrade
"E", # pycodestyle errors
"W", # pycodestyle warnings
"PLC", # pylint convention
"PLE", # pylint error
# "PLR", # pylint refactor Magic value used in comparison, consider replacing 400 with a constant variable
"PLW", # pylint warning
"RUF", # ruff specific
"T",
]
ignore = [
"E501", # line too long
"B008", # do not perform function calls in argument defaults
"B006", # do not use mutable data structures for argument defaults
"C901", # too complex
"S101", # Use of `assert` detected
"S301", # `pickle` and modules that wrap it can be unsafe
"T201", "T203", # remove print and pprint
"S105", # Potential password
"PLR0913", "PLR0912", "PLR0915", # Too many branches/statements/arguments to function call
"A002", "A003", # Argument/Class attribute `type` is shadowing a Python builtin
]
[tool.ruff.per-file-ignores]
"__init__.py" = ["I", "F401"] # module imported but unused