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Bug??? Confusion about ld_clump vs ld_clump_local #42

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Rick-Chen-PKU opened this issue Nov 10, 2023 · 0 comments
Open

Bug??? Confusion about ld_clump vs ld_clump_local #42

Rick-Chen-PKU opened this issue Nov 10, 2023 · 0 comments

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@Rick-Chen-PKU
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Rick-Chen-PKU commented Nov 10, 2023

There are following doubts about ld_clump and ld_clump_local functions, if I have a copy of exposed data with 10 snps. I want to clump by id grouping, with same parameter setting, ld_clump and ld_clump_local give two different results, may I know why?

  1. Sample data
    17e2ffddfdd183500fb6f57c47d3b07

  2. Sample code
    c20c0730b544bb2c09d35902ed642f9

  3. Sample results
    44f7948175ab67b2241a6f66c8db67e

I guess the id variable in the dat parameter of ld_clump_local seems to be disabled. Any relevant responses greatly appreciated!

@Rick-Chen-PKU Rick-Chen-PKU changed the title Confusion about ld_clump vs ld_clump_local Bug??? Confusion about ld_clump vs ld_clump_local Nov 10, 2023
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