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index 9bb6b8538..02aea1115 100644
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+++ b/latest/_modules/index.html
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-        <script src="../_static/doctools.js?v=888ff710"></script>
+        <script src="../_static/doctools.js?v=9a2dae69"></script>
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index 865d5efc6..40bc88713 100644
--- a/latest/_modules/mpas_analysis/__main__.html
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diff --git a/latest/_modules/mpas_analysis/download_data.html b/latest/_modules/mpas_analysis/download_data.html
index 60fae864b..b0778f16a 100644
--- a/latest/_modules/mpas_analysis/download_data.html
+++ b/latest/_modules/mpas_analysis/download_data.html
@@ -13,7 +13,7 @@
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+        <script src="../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_antarctic_melt.html b/latest/_modules/mpas_analysis/ocean/climatology_map_antarctic_melt.html
index af35ed561..e8db8d5e0 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_antarctic_melt.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_antarctic_melt.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_argo.html b/latest/_modules/mpas_analysis/ocean/climatology_map_argo.html
index 5b73ea39f..d61cd0bbc 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_argo.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_argo.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_eke.html b/latest/_modules/mpas_analysis/ocean/climatology_map_eke.html
index af16cef57..343215752 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_eke.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_eke.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_mld.html b/latest/_modules/mpas_analysis/ocean/climatology_map_mld.html
index c6398e8ad..ded22a8ad 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_mld.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_mld.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
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+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_mld_min_max.html b/latest/_modules/mpas_analysis/ocean/climatology_map_mld_min_max.html
index 50ead99ad..5fa365aee 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_mld_min_max.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_mld_min_max.html
@@ -13,7 +13,7 @@
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+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_ohc_anomaly.html b/latest/_modules/mpas_analysis/ocean/climatology_map_ohc_anomaly.html
index ff7e5639f..cab4d9e35 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_ohc_anomaly.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_ohc_anomaly.html
@@ -13,7 +13,7 @@
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+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_sose.html b/latest/_modules/mpas_analysis/ocean/climatology_map_sose.html
index 78453fa2f..10773bdd5 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_sose.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_sose.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_ssh.html b/latest/_modules/mpas_analysis/ocean/climatology_map_ssh.html
index 9a03c4875..fd9657744 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_ssh.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_ssh.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_sss.html b/latest/_modules/mpas_analysis/ocean/climatology_map_sss.html
index df818b473..31eb47925 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_sss.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_sss.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_sst.html b/latest/_modules/mpas_analysis/ocean/climatology_map_sst.html
index bf679decd..3df07474c 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_sst.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_sst.html
@@ -13,7 +13,7 @@
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         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/climatology_map_waves.html b/latest/_modules/mpas_analysis/ocean/climatology_map_waves.html
index 03bf4f92d..caa63dad5 100644
--- a/latest/_modules/mpas_analysis/ocean/climatology_map_waves.html
+++ b/latest/_modules/mpas_analysis/ocean/climatology_map_waves.html
@@ -13,7 +13,7 @@
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         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/compute_anomaly_subtask.html b/latest/_modules/mpas_analysis/ocean/compute_anomaly_subtask.html
index 089b7793f..dddd91e10 100644
--- a/latest/_modules/mpas_analysis/ocean/compute_anomaly_subtask.html
+++ b/latest/_modules/mpas_analysis/ocean/compute_anomaly_subtask.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/ocean/conservation.html b/latest/_modules/mpas_analysis/ocean/conservation.html
index 95b20553c..2b1ca74d5 100644
--- a/latest/_modules/mpas_analysis/ocean/conservation.html
+++ b/latest/_modules/mpas_analysis/ocean/conservation.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/ocean/histogram.html b/latest/_modules/mpas_analysis/ocean/histogram.html
index d6b28a850..f393f7937 100644
--- a/latest/_modules/mpas_analysis/ocean/histogram.html
+++ b/latest/_modules/mpas_analysis/ocean/histogram.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/index_nino34.html b/latest/_modules/mpas_analysis/ocean/index_nino34.html
index 283eab04f..ed3d2e3df 100644
--- a/latest/_modules/mpas_analysis/ocean/index_nino34.html
+++ b/latest/_modules/mpas_analysis/ocean/index_nino34.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
@@ -115,6 +115,7 @@ <h1>Source code for mpas_analysis.ocean.index_nino34</h1><div class="highlight">
 <span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">scipy</span> <span class="kn">import</span> <span class="n">signal</span><span class="p">,</span> <span class="n">stats</span>
+<span class="kn">from</span> <span class="nn">scipy.signal.windows</span> <span class="kn">import</span> <span class="n">tukey</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
 <span class="kn">from</span> <span class="nn">mpas_analysis.shared.climatology</span> <span class="kn">import</span> <span class="n">climatology</span>
@@ -504,7 +505,7 @@ <h1>Source code for mpas_analysis.ocean.index_nino34</h1><div class="highlight">
 
         <span class="c1"># Move nino34Index to numpy to allow functionality with scipy routines</span>
         <span class="n">ninoIndex</span> <span class="o">=</span> <span class="n">nino34Index</span><span class="o">.</span><span class="n">values</span>
-        <span class="n">window</span> <span class="o">=</span> <span class="n">signal</span><span class="o">.</span><span class="n">tukey</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ninoIndex</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">)</span>
+        <span class="n">window</span> <span class="o">=</span> <span class="n">tukey</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ninoIndex</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">)</span>
         <span class="n">f</span><span class="p">,</span> <span class="n">Pxx</span> <span class="o">=</span> <span class="n">signal</span><span class="o">.</span><span class="n">periodogram</span><span class="p">(</span><span class="n">window</span> <span class="o">*</span> <span class="n">ninoIndex</span><span class="p">,</span>
                                     <span class="mf">1.0</span> <span class="o">/</span> <span class="n">constants</span><span class="o">.</span><span class="n">sec_per_month</span><span class="p">)</span>
 
diff --git a/latest/_modules/mpas_analysis/ocean/meridional_heat_transport.html b/latest/_modules/mpas_analysis/ocean/meridional_heat_transport.html
index 5463395be..2f65ff1a5 100644
--- a/latest/_modules/mpas_analysis/ocean/meridional_heat_transport.html
+++ b/latest/_modules/mpas_analysis/ocean/meridional_heat_transport.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/plot_depth_integrated_time_series_subtask.html b/latest/_modules/mpas_analysis/ocean/plot_depth_integrated_time_series_subtask.html
index c740b437d..67f90cd62 100644
--- a/latest/_modules/mpas_analysis/ocean/plot_depth_integrated_time_series_subtask.html
+++ b/latest/_modules/mpas_analysis/ocean/plot_depth_integrated_time_series_subtask.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/plot_hovmoller_subtask.html b/latest/_modules/mpas_analysis/ocean/plot_hovmoller_subtask.html
index 6e8a3d964..6ec8cc0f2 100644
--- a/latest/_modules/mpas_analysis/ocean/plot_hovmoller_subtask.html
+++ b/latest/_modules/mpas_analysis/ocean/plot_hovmoller_subtask.html
@@ -13,7 +13,7 @@
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-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/streamfunction_moc.html b/latest/_modules/mpas_analysis/ocean/streamfunction_moc.html
index ea190116a..f1398f48d 100644
--- a/latest/_modules/mpas_analysis/ocean/streamfunction_moc.html
+++ b/latest/_modules/mpas_analysis/ocean/streamfunction_moc.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/time_series_antarctic_melt.html b/latest/_modules/mpas_analysis/ocean/time_series_antarctic_melt.html
index 5e084e8e9..8ccde427f 100644
--- a/latest/_modules/mpas_analysis/ocean/time_series_antarctic_melt.html
+++ b/latest/_modules/mpas_analysis/ocean/time_series_antarctic_melt.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
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diff --git a/latest/_modules/mpas_analysis/ocean/time_series_ocean_regions.html b/latest/_modules/mpas_analysis/ocean/time_series_ocean_regions.html
index 81d00654c..1e08db834 100644
--- a/latest/_modules/mpas_analysis/ocean/time_series_ocean_regions.html
+++ b/latest/_modules/mpas_analysis/ocean/time_series_ocean_regions.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/ocean/time_series_ohc_anomaly.html b/latest/_modules/mpas_analysis/ocean/time_series_ohc_anomaly.html
index 2477528bf..51940d1b7 100644
--- a/latest/_modules/mpas_analysis/ocean/time_series_ohc_anomaly.html
+++ b/latest/_modules/mpas_analysis/ocean/time_series_ohc_anomaly.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
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         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/regions/compute_region_masks.html b/latest/_modules/mpas_analysis/shared/regions/compute_region_masks.html
index 7aae4d7ac..29888da79 100644
--- a/latest/_modules/mpas_analysis/shared/regions/compute_region_masks.html
+++ b/latest/_modules/mpas_analysis/shared/regions/compute_region_masks.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/regions/compute_region_masks_subtask.html b/latest/_modules/mpas_analysis/shared/regions/compute_region_masks_subtask.html
index e91460189..723b95798 100644
--- a/latest/_modules/mpas_analysis/shared/regions/compute_region_masks_subtask.html
+++ b/latest/_modules/mpas_analysis/shared/regions/compute_region_masks_subtask.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/time_series/anomaly.html b/latest/_modules/mpas_analysis/shared/time_series/anomaly.html
index d80a10335..fa3df7cb4 100644
--- a/latest/_modules/mpas_analysis/shared/time_series/anomaly.html
+++ b/latest/_modules/mpas_analysis/shared/time_series/anomaly.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/time_series/moving_average.html b/latest/_modules/mpas_analysis/shared/time_series/moving_average.html
index d20080973..7824b76f2 100644
--- a/latest/_modules/mpas_analysis/shared/time_series/moving_average.html
+++ b/latest/_modules/mpas_analysis/shared/time_series/moving_average.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/time_series/mpas_time_series_task.html b/latest/_modules/mpas_analysis/shared/time_series/mpas_time_series_task.html
index af440fdde..0f0df8ba8 100644
--- a/latest/_modules/mpas_analysis/shared/time_series/mpas_time_series_task.html
+++ b/latest/_modules/mpas_analysis/shared/time_series/mpas_time_series_task.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/time_series/time_series.html b/latest/_modules/mpas_analysis/shared/time_series/time_series.html
index 54f601261..96317056f 100644
--- a/latest/_modules/mpas_analysis/shared/time_series/time_series.html
+++ b/latest/_modules/mpas_analysis/shared/time_series/time_series.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/timekeeping/MpasRelativeDelta.html b/latest/_modules/mpas_analysis/shared/timekeeping/MpasRelativeDelta.html
index b78d2ab00..769a1eb8f 100644
--- a/latest/_modules/mpas_analysis/shared/timekeeping/MpasRelativeDelta.html
+++ b/latest/_modules/mpas_analysis/shared/timekeeping/MpasRelativeDelta.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/timekeeping/utility.html b/latest/_modules/mpas_analysis/shared/timekeeping/utility.html
index 09e547df2..8d62ce7f2 100644
--- a/latest/_modules/mpas_analysis/shared/timekeeping/utility.html
+++ b/latest/_modules/mpas_analysis/shared/timekeeping/utility.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_modules/mpas_analysis/shared/transects/compute_transect_masks_subtask.html b/latest/_modules/mpas_analysis/shared/transects/compute_transect_masks_subtask.html
index 8f7ad1512..ee993a3f8 100644
--- a/latest/_modules/mpas_analysis/shared/transects/compute_transect_masks_subtask.html
+++ b/latest/_modules/mpas_analysis/shared/transects/compute_transect_masks_subtask.html
@@ -13,7 +13,7 @@
   <![endif]-->
   
         <script src="../../../../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../../../../_static/doctools.js?v=888ff710"></script>
+        <script src="../../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../../../genindex.html" />
diff --git a/latest/_static/basic.css b/latest/_static/basic.css
index 30fee9d0f..f316efcb4 100644
--- a/latest/_static/basic.css
+++ b/latest/_static/basic.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
diff --git a/latest/_static/doctools.js b/latest/_static/doctools.js
index d06a71d75..4d67807d1 100644
--- a/latest/_static/doctools.js
+++ b/latest/_static/doctools.js
@@ -4,7 +4,7 @@
  *
  * Base JavaScript utilities for all Sphinx HTML documentation.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
diff --git a/latest/_static/language_data.js b/latest/_static/language_data.js
index 250f5665f..367b8ed81 100644
--- a/latest/_static/language_data.js
+++ b/latest/_static/language_data.js
@@ -5,7 +5,7 @@
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -13,7 +13,7 @@
 var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
 
 
-/* Non-minified version is copied as a separate JS file, is available */
+/* Non-minified version is copied as a separate JS file, if available */
 
 /**
  * Porter Stemmer
diff --git a/latest/_static/searchtools.js b/latest/_static/searchtools.js
index 7918c3fab..92da3f8b2 100644
--- a/latest/_static/searchtools.js
+++ b/latest/_static/searchtools.js
@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for the full-text search.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -99,7 +99,7 @@ const _displayItem = (item, searchTerms, highlightTerms) => {
       .then((data) => {
         if (data)
           listItem.appendChild(
-            Search.makeSearchSummary(data, searchTerms)
+            Search.makeSearchSummary(data, searchTerms, anchor)
           );
         // highlight search terms in the summary
         if (SPHINX_HIGHLIGHT_ENABLED)  // set in sphinx_highlight.js
@@ -116,8 +116,8 @@ const _finishSearch = (resultCount) => {
     );
   else
     Search.status.innerText = _(
-      `Search finished, found ${resultCount} page(s) matching the search query.`
-    );
+      "Search finished, found ${resultCount} page(s) matching the search query."
+    ).replace('${resultCount}', resultCount);
 };
 const _displayNextItem = (
   results,
@@ -137,6 +137,22 @@ const _displayNextItem = (
   // search finished, update title and status message
   else _finishSearch(resultCount);
 };
+// Helper function used by query() to order search results.
+// Each input is an array of [docname, title, anchor, descr, score, filename].
+// Order the results by score (in opposite order of appearance, since the
+// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
+const _orderResultsByScoreThenName = (a, b) => {
+  const leftScore = a[4];
+  const rightScore = b[4];
+  if (leftScore === rightScore) {
+    // same score: sort alphabetically
+    const leftTitle = a[1].toLowerCase();
+    const rightTitle = b[1].toLowerCase();
+    if (leftTitle === rightTitle) return 0;
+    return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
+  }
+  return leftScore > rightScore ? 1 : -1;
+};
 
 /**
  * Default splitQuery function. Can be overridden in ``sphinx.search`` with a
@@ -160,13 +176,26 @@ const Search = {
   _queued_query: null,
   _pulse_status: -1,
 
-  htmlToText: (htmlString) => {
+  htmlToText: (htmlString, anchor) => {
     const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html');
-    htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() });
+    for (const removalQuery of [".headerlinks", "script", "style"]) {
+      htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() });
+    }
+    if (anchor) {
+      const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`);
+      if (anchorContent) return anchorContent.textContent;
+
+      console.warn(
+        `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.`
+      );
+    }
+
+    // if anchor not specified or not found, fall back to main content
     const docContent = htmlElement.querySelector('[role="main"]');
-    if (docContent !== undefined) return docContent.textContent;
+    if (docContent) return docContent.textContent;
+
     console.warn(
-      "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template."
+      "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template."
     );
     return "";
   },
@@ -239,16 +268,7 @@ const Search = {
     else Search.deferQuery(query);
   },
 
-  /**
-   * execute search (requires search index to be loaded)
-   */
-  query: (query) => {
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const titles = Search._index.titles;
-    const allTitles = Search._index.alltitles;
-    const indexEntries = Search._index.indexentries;
-
+  _parseQuery: (query) => {
     // stem the search terms and add them to the correct list
     const stemmer = new Stemmer();
     const searchTerms = new Set();
@@ -284,16 +304,32 @@ const Search = {
     // console.info("required: ", [...searchTerms]);
     // console.info("excluded: ", [...excludedTerms]);
 
-    // array of [docname, title, anchor, descr, score, filename]
-    let results = [];
+    return [query, searchTerms, excludedTerms, highlightTerms, objectTerms];
+  },
+
+  /**
+   * execute search (requires search index to be loaded)
+   */
+  _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => {
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const titles = Search._index.titles;
+    const allTitles = Search._index.alltitles;
+    const indexEntries = Search._index.indexentries;
+
+    // Collect multiple result groups to be sorted separately and then ordered.
+    // Each is an array of [docname, title, anchor, descr, score, filename].
+    const normalResults = [];
+    const nonMainIndexResults = [];
+
     _removeChildren(document.getElementById("search-progress"));
 
-    const queryLower = query.toLowerCase();
+    const queryLower = query.toLowerCase().trim();
     for (const [title, foundTitles] of Object.entries(allTitles)) {
-      if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) {
+      if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) {
         for (const [file, id] of foundTitles) {
           let score = Math.round(100 * queryLower.length / title.length)
-          results.push([
+          normalResults.push([
             docNames[file],
             titles[file] !== title ? `${titles[file]} > ${title}` : title,
             id !== null ? "#" + id : "",
@@ -308,46 +344,47 @@ const Search = {
     // search for explicit entries in index directives
     for (const [entry, foundEntries] of Object.entries(indexEntries)) {
       if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) {
-        for (const [file, id] of foundEntries) {
-          let score = Math.round(100 * queryLower.length / entry.length)
-          results.push([
+        for (const [file, id, isMain] of foundEntries) {
+          const score = Math.round(100 * queryLower.length / entry.length);
+          const result = [
             docNames[file],
             titles[file],
             id ? "#" + id : "",
             null,
             score,
             filenames[file],
-          ]);
+          ];
+          if (isMain) {
+            normalResults.push(result);
+          } else {
+            nonMainIndexResults.push(result);
+          }
         }
       }
     }
 
     // lookup as object
     objectTerms.forEach((term) =>
-      results.push(...Search.performObjectSearch(term, objectTerms))
+      normalResults.push(...Search.performObjectSearch(term, objectTerms))
     );
 
     // lookup as search terms in fulltext
-    results.push(...Search.performTermsSearch(searchTerms, excludedTerms));
+    normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms));
 
     // let the scorer override scores with a custom scoring function
-    if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item)));
-
-    // now sort the results by score (in opposite order of appearance, since the
-    // display function below uses pop() to retrieve items) and then
-    // alphabetically
-    results.sort((a, b) => {
-      const leftScore = a[4];
-      const rightScore = b[4];
-      if (leftScore === rightScore) {
-        // same score: sort alphabetically
-        const leftTitle = a[1].toLowerCase();
-        const rightTitle = b[1].toLowerCase();
-        if (leftTitle === rightTitle) return 0;
-        return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
-      }
-      return leftScore > rightScore ? 1 : -1;
-    });
+    if (Scorer.score) {
+      normalResults.forEach((item) => (item[4] = Scorer.score(item)));
+      nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item)));
+    }
+
+    // Sort each group of results by score and then alphabetically by name.
+    normalResults.sort(_orderResultsByScoreThenName);
+    nonMainIndexResults.sort(_orderResultsByScoreThenName);
+
+    // Combine the result groups in (reverse) order.
+    // Non-main index entries are typically arbitrary cross-references,
+    // so display them after other results.
+    let results = [...nonMainIndexResults, ...normalResults];
 
     // remove duplicate search results
     // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept
@@ -361,7 +398,12 @@ const Search = {
       return acc;
     }, []);
 
-    results = results.reverse();
+    return results.reverse();
+  },
+
+  query: (query) => {
+    const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query);
+    const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms);
 
     // for debugging
     //Search.lastresults = results.slice();  // a copy
@@ -466,14 +508,18 @@ const Search = {
       // add support for partial matches
       if (word.length > 2) {
         const escapedWord = _escapeRegExp(word);
-        Object.keys(terms).forEach((term) => {
-          if (term.match(escapedWord) && !terms[word])
-            arr.push({ files: terms[term], score: Scorer.partialTerm });
-        });
-        Object.keys(titleTerms).forEach((term) => {
-          if (term.match(escapedWord) && !titleTerms[word])
-            arr.push({ files: titleTerms[word], score: Scorer.partialTitle });
-        });
+        if (!terms.hasOwnProperty(word)) {
+          Object.keys(terms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: terms[term], score: Scorer.partialTerm });
+          });
+        }
+        if (!titleTerms.hasOwnProperty(word)) {
+          Object.keys(titleTerms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: titleTerms[term], score: Scorer.partialTitle });
+          });
+        }
       }
 
       // no match but word was a required one
@@ -496,9 +542,8 @@ const Search = {
 
       // create the mapping
       files.forEach((file) => {
-        if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1)
-          fileMap.get(file).push(word);
-        else fileMap.set(file, [word]);
+        if (!fileMap.has(file)) fileMap.set(file, [word]);
+        else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word);
       });
     });
 
@@ -549,8 +594,8 @@ const Search = {
    * search summary for a given text. keywords is a list
    * of stemmed words.
    */
-  makeSearchSummary: (htmlText, keywords) => {
-    const text = Search.htmlToText(htmlText);
+  makeSearchSummary: (htmlText, keywords, anchor) => {
+    const text = Search.htmlToText(htmlText, anchor);
     if (text === "") return null;
 
     const textLower = text.toLowerCase();
diff --git a/latest/authors.html b/latest/authors.html
index dd2aac90c..ebeb2e005 100644
--- a/latest/authors.html
+++ b/latest/authors.html
@@ -14,7 +14,7 @@
   <![endif]-->
   
         <script src="_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="_static/doctools.js?v=888ff710"></script>
+        <script src="_static/doctools.js?v=9a2dae69"></script>
         <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
diff --git a/latest/design_docs/analysis_task_template.html b/latest/design_docs/analysis_task_template.html
index fc0660fcf..e19c52bfa 100644
--- a/latest/design_docs/analysis_task_template.html
+++ b/latest/design_docs/analysis_task_template.html
@@ -14,7 +14,7 @@
   <![endif]-->
   
         <script src="../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../_static/doctools.js?v=888ff710"></script>
+        <script src="../_static/doctools.js?v=9a2dae69"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
diff --git a/latest/design_docs/config_file_reorganization.html b/latest/design_docs/config_file_reorganization.html
index 76b7b7a5c..3ab92ab3b 100644
--- a/latest/design_docs/config_file_reorganization.html
+++ b/latest/design_docs/config_file_reorganization.html
@@ -14,7 +14,7 @@
   <![endif]-->
   
         <script src="../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../_static/doctools.js?v=888ff710"></script>
+        <script src="../_static/doctools.js?v=9a2dae69"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
diff --git a/latest/design_docs/eddykineticenergy.html b/latest/design_docs/eddykineticenergy.html
index 77a0f2e1f..9bd6d3dd1 100644
--- a/latest/design_docs/eddykineticenergy.html
+++ b/latest/design_docs/eddykineticenergy.html
@@ -14,7 +14,7 @@
   <![endif]-->
   
         <script src="../_static/documentation_options.js?v=c6e86fd7"></script>
-        <script src="../_static/doctools.js?v=888ff710"></script>
+        <script src="../_static/doctools.js?v=9a2dae69"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
diff --git a/latest/design_docs/generalize_calendar.html b/latest/design_docs/generalize_calendar.html
index 35ccb51ac..d26c14f93 100644
--- a/latest/design_docs/generalize_calendar.html
+++ b/latest/design_docs/generalize_calendar.html
@@ -14,7 +14,7 @@
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.StreamfunctionMOC.html b/latest/developers_guide/generated/mpas_analysis.ocean.StreamfunctionMOC.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesOHCAnomaly.html b/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesOHCAnomaly.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesOceanRegions.html b/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesOceanRegions.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesSST.html b/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesSST.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesSalinityAnomaly.html b/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesSalinityAnomaly.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesTemperatureAnomaly.html b/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesTemperatureAnomaly.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesTransport.html b/latest/developers_guide/generated/mpas_analysis.ocean.TimeSeriesTransport.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.compute_anomaly_subtask.ComputeAnomalySubtask.html b/latest/developers_guide/generated/mpas_analysis.ocean.compute_anomaly_subtask.ComputeAnomalySubtask.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.ocean.plot_depth_integrated_time_series_subtask.PlotDepthIntegratedTimeSeriesSubtask.html b/latest/developers_guide/generated/mpas_analysis.ocean.plot_depth_integrated_time_series_subtask.PlotDepthIntegratedTimeSeriesSubtask.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.sea_ice.ClimatologyMapSeaIceConc.html b/latest/developers_guide/generated/mpas_analysis.sea_ice.ClimatologyMapSeaIceConc.html
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diff --git a/latest/developers_guide/generated/mpas_analysis.sea_ice.ClimatologyMapSeaIceThick.html b/latest/developers_guide/generated/mpas_analysis.sea_ice.ClimatologyMapSeaIceThick.html
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173, 174, 177, 179, 180, 181, 182, 183, 184, 185, 186, 189, 191, 194, 195, 197, 198, 200, 201, 203, 204, 205, 206, 207, 209, 211, 212, 213, 214, 216, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 244, 247], "need": [1, 4, 5, 7, 8, 9, 10, 11, 13, 33, 55, 62, 64, 77, 78, 82, 99, 116, 117, 119, 140, 141, 142, 143, 144, 147, 148, 152, 153, 156, 158, 159, 162, 163, 164, 169, 170, 171, 237, 238], "serv": [1, 3, 4], "start": [1, 4, 11, 27, 33, 52, 59, 61, 85, 97, 105, 106, 118, 126, 127, 128, 129, 134, 140, 143, 152, 153, 158, 162, 163, 183, 184, 213, 229, 231, 234, 237, 238, 239, 240, 242, 243, 244, 245, 246], "point": [1, 4, 5, 16, 20, 45, 56, 111, 116, 117, 119, 120, 128, 129, 141, 142, 143, 144, 149, 152, 158, 159, 160, 161, 163, 167, 168, 178, 203, 218, 219, 224, 225, 230, 231, 233, 236, 237, 238, 240, 242, 243, 244, 245, 247], "write": [1, 7, 9, 13, 15, 45, 52, 127, 141, 142, 144, 159, 160], "ensur": [1, 2, 3, 4, 7, 8, 11, 111, 143, 180], "standard": [1, 10, 143, 144, 150, 152, 156, 158, 177, 203, 235], "set": [1, 3, 4, 5, 6, 7, 8, 11, 20, 45, 46, 47, 53, 55, 56, 59, 60, 62, 64, 66, 67, 71, 73, 76, 77, 78, 82, 85, 99, 103, 105, 106, 107, 108, 109, 112, 114, 115, 116, 117, 119, 120, 127, 128, 129, 139, 140, 141, 142, 143, 145, 148, 149, 150, 151, 153, 156, 157, 158, 159, 160, 163, 166, 174, 178, 180, 183, 185, 186, 187, 196, 198, 200, 202, 203, 216, 226, 230, 232, 233, 234, 236, 239, 240, 241, 244, 246], "make": [1, 2, 3, 4, 7, 8, 9, 11, 47, 54, 77, 78, 83, 102, 123, 124, 138, 141, 143, 144, 148, 153, 156, 159, 167, 203, 205, 217, 226, 236], "easier": [1, 2, 11, 141, 142], "perform": [1, 4, 5, 7, 9, 10, 11, 38, 39, 40, 41, 42, 43, 45, 51, 52, 60, 71, 82, 85, 106, 109, 111, 116, 117, 119, 120, 128, 129, 141, 142, 143, 144, 147, 148, 153, 156, 157, 158, 163, 165, 167, 170, 171, 203, 212, 229, 238], "action": 1, "check": [1, 4, 7, 8, 54, 60, 71, 141, 142, 143, 144, 148, 153, 158], "whether": [1, 4, 7, 9, 13, 15, 54, 55, 60, 64, 82, 115, 116, 117, 127, 141, 143, 154, 156, 205, 208, 211, 212, 220, 221, 222, 223, 227, 228, 231], "should": [1, 2, 4, 5, 7, 8, 9, 11, 13, 14, 18, 19, 45, 52, 55, 57, 58, 60, 64, 72, 82, 98, 112, 115, 116, 117, 141, 142, 143, 144, 147, 148, 149, 151, 153, 154, 155, 156, 158, 159, 161, 162, 163, 165, 167, 170, 171, 180, 194, 203, 210, 216, 218, 219, 224, 225, 229, 230, 231, 234, 235, 236, 237, 238, 240, 241, 244, 247], "run": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 14, 15, 17, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 44, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 58, 60, 109, 114, 115, 116, 117, 129, 140, 141, 143, 148, 149, 150, 151, 152, 153, 156, 159, 165, 168, 196, 212, 229, 236, 238, 239, 240, 242], "requir": [1, 2, 4, 5, 7, 8, 9, 10, 11, 77, 78, 85, 97, 105, 106, 141, 143, 144, 153, 159, 172, 180, 203], "model": [1, 2, 3, 5, 37, 72, 109, 110, 114, 115, 117, 140, 141, 142, 143, 144, 147, 148, 149, 150, 156, 163, 167, 169, 170, 171, 176, 177, 180, 183, 184, 189, 203, 205, 206, 207, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 230, 233, 236, 237, 238, 247], "observ": [1, 2, 3, 5, 9, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 48, 49, 50, 60, 72, 73, 75, 77, 78, 109, 110, 114, 115, 116, 117, 119, 124, 140, 141, 142, 143, 145, 148, 149, 150, 152, 159, 165, 167, 168, 177, 178, 179, 180, 183, 184, 186, 200, 202, 203, 204, 212, 213, 220, 222, 226, 229, 230], "purg": [1, 140, 142, 143], "from": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 18, 20, 27, 33, 34, 35, 37, 38, 39, 41, 42, 43, 45, 51, 61, 64, 71, 73, 75, 76, 77, 78, 79, 82, 85, 94, 97, 100, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 119, 120, 121, 122, 124, 126, 127, 128, 129, 134, 135, 136, 137, 138, 139, 141, 142, 143, 144, 145, 147, 148, 150, 151, 152, 153, 156, 158, 159, 161, 162, 163, 165, 167, 170, 171, 172, 173, 174, 177, 178, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 193, 195, 196, 197, 198, 201, 202, 203, 205, 208, 209, 212, 214, 215, 217, 226, 229, 231, 232, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246], "previou": [1, 2, 4, 5, 7, 142, 143, 144, 148, 150, 165, 179, 180, 198, 199, 203, 229], "sequenc": [1, 8, 196], "futur": [1, 2, 5, 7, 9, 10, 143, 144, 153, 234, 236, 238], "parallel": [1, 6, 8, 11, 17, 56, 57, 140, 142, 143, 144, 151, 156], "demonstr": [1, 10, 141, 147, 170], "style": [1, 113, 116, 117, 119, 120, 141, 142, 183, 184], "comment": [1, 2, 163, 203, 231, 238, 239, 240, 242, 243, 244, 245, 246], "document": [1, 2, 3, 4, 9, 10, 11, 12, 60, 140, 143, 144, 147, 171, 248], "last": [1, 2, 4, 5, 7, 8, 9, 10, 11, 85, 97, 99, 141, 142, 143, 144, 148, 149, 216], "modifi": [1, 2, 4, 5, 7, 8, 9, 10, 11, 141, 142, 143, 144, 147, 156, 162, 168, 170, 171, 203, 218, 219, 224, 225, 244], "contributor": [1, 2, 4, 5, 7, 8, 9, 10, 11, 140], "whole": [1, 142, 203], "funciton": [1, 4, 11, 62, 127, 233], "valid": [1, 2, 4, 5, 7, 8, 9, 10, 11, 109, 116, 117, 141, 142, 143, 144, 148, 159, 164, 167, 186, 195, 229, 230, 237, 247], "within": [1, 4, 7, 11, 85, 96, 99, 100, 142, 143, 147, 149, 151, 152, 153, 156, 159, 162, 169, 170, 175, 178, 185, 187, 196, 201, 203, 234, 239], "config": [1, 3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 15, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 55, 59, 61, 64, 68, 69, 74, 79, 80, 81, 82, 83, 84, 85, 100, 109, 112, 113, 114, 115, 116, 117, 119, 120, 123, 124, 126, 138, 140, 142, 143, 144, 148, 151, 152, 153, 155, 156, 160, 163, 165, 168, 203, 212, 226, 229, 230, 231, 235, 238, 240, 242, 244], "option": [1, 2, 4, 5, 7, 9, 10, 11, 13, 14, 15, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 59, 61, 62, 64, 68, 69, 72, 74, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 88, 93, 97, 98, 99, 100, 105, 106, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 123, 124, 126, 127, 128, 129, 131, 132, 133, 136, 137, 138, 142, 143, 144, 147, 149, 150, 151, 152, 153, 154, 155, 156, 158, 160, 161, 162, 163, 164, 165, 167, 168, 170, 171, 189, 203], "ones": [1, 140, 142, 144], "thei": [1, 3, 5, 7, 8, 10, 13, 111, 116, 117, 141, 143, 144, 147, 151, 152, 153, 156, 158, 159, 160, 162, 163, 170, 171, 180, 189, 200, 230, 234, 236, 241], "ar": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 13, 19, 20, 33, 45, 46, 47, 52, 60, 62, 64, 71, 76, 77, 78, 85, 97, 98, 109, 110, 111, 114, 116, 117, 118, 124, 127, 130, 140, 141, 142, 143, 144, 147, 148, 149, 150, 151, 152, 153, 156, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 174, 175, 176, 177, 178, 180, 181, 183, 184, 185, 186, 187, 189, 191, 193, 194, 195, 196, 197, 198, 199, 200, 201, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247], "miss": [1, 3, 9, 141, 144, 192], "data": [1, 3, 4, 5, 6, 7, 8, 11, 20, 45, 46, 47, 60, 66, 67, 73, 76, 77, 78, 82, 85, 93, 99, 105, 106, 107, 108, 109, 114, 115, 116, 117, 119, 120, 127, 128, 129, 140, 141, 142, 143, 144, 145, 148, 151, 152, 153, 158, 159, 161, 162, 163, 165, 167, 172, 174, 175, 176, 177, 178, 180, 182, 183, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 202, 204, 206, 207, 209, 216, 217, 227, 228, 229, 232, 233, 234, 236, 241], "present": [1, 4, 76, 77, 78, 85, 99, 105, 106, 117, 143, 159, 176, 180, 181, 196, 198, 200, 203, 216, 234], "rather": [1, 7, 10, 11, 64, 82, 88, 115, 116, 117, 141, 142, 143, 153, 210, 212, 218, 219, 220, 221, 222, 223, 224, 225, 237], "than": [1, 3, 4, 5, 7, 10, 11, 52, 64, 65, 82, 88, 111, 113, 114, 115, 116, 117, 119, 120, 141, 142, 143, 144, 148, 149, 153, 164, 173, 192, 203, 210, 212, 218, 219, 220, 221, 222, 223, 224, 225, 230, 237, 241, 247], "sometim": [1, 77, 78, 141, 142, 143, 144, 203], "current": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 19, 88, 116, 130, 141, 143, 144, 145, 147, 150, 153, 156, 162, 170, 171, 177, 180, 183, 184, 201, 202, 209, 230, 234, 236, 238], "case": [1, 5, 7, 8, 11, 117, 141, 142, 143, 144, 147, 148, 149, 150, 151, 153, 156, 159, 167, 170, 180, 203, 212, 234, 236, 238, 241], "continu": [1, 9, 141, 142, 143, 144, 181, 205, 211, 212, 220, 221, 222, 223, 227, 228, 231, 236], "even": [1, 141, 143, 144, 147, 170, 171, 239], "when": [1, 3, 4, 5, 7, 8, 10, 11, 13, 15, 46, 47, 60, 61, 109, 110, 116, 117, 126, 142, 143, 144, 149, 150, 151, 152, 153, 159, 175, 177, 178, 180, 181, 185, 187, 195, 196, 197, 203, 209, 212, 214], "fail": [1, 3, 7, 8, 142, 144, 159], "If": [1, 2, 5, 7, 8, 9, 10, 13, 52, 54, 55, 56, 61, 64, 71, 77, 78, 79, 81, 82, 85, 88, 94, 97, 99, 101, 105, 106, 108, 109, 111, 115, 116, 117, 121, 122, 124, 127, 131, 132, 133, 134, 135, 136, 137, 142, 143, 144, 148, 152, 153, 156, 158, 159, 161, 162, 163, 164, 167, 176, 194, 203, 205, 229, 230, 231, 234, 236, 240], "an": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 12, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 45, 47, 48, 49, 50, 52, 54, 61, 64, 72, 77, 83, 84, 85, 94, 99, 100, 101, 105, 106, 109, 110, 111, 112, 114, 116, 117, 123, 124, 126, 129, 131, 132, 133, 134, 135, 136, 137, 138, 140, 147, 148, 149, 152, 153, 155, 156, 158, 159, 162, 164, 165, 167, 169, 174, 175, 176, 178, 179, 180, 182, 185, 186, 187, 194, 196, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247], "error": [1, 4, 7, 8, 71, 113, 119, 141, 142, 143, 151, 155, 165, 174, 177, 229], "messag": [1, 8, 142, 144, 148], "print": [1, 4, 7, 127, 141, 143, 159, 200], "other": [1, 2, 3, 7, 8, 10, 11, 45, 52, 57, 60, 64, 65, 77, 78, 113, 114, 115, 116, 117, 119, 120, 130, 141, 142, 143, 144, 152, 153, 156, 157, 158, 159, 164, 167, 173, 178, 180, 200, 203, 210, 218, 219, 220, 221, 222, 223, 224, 225, 237, 238, 240, 247], "allow": [1, 4, 7, 8, 9, 57, 106, 116, 117, 119, 138, 142, 143, 144, 147, 148, 151, 153, 170, 171, 172, 180, 224, 225, 233, 236, 239], "similarli": [1, 2, 3, 141, 142, 144, 153, 156], "given": [1, 2, 5, 7, 8, 9, 10, 11, 18, 54, 57, 59, 60, 64, 68, 69, 74, 82, 85, 89, 90, 91, 92, 95, 96, 97, 99, 100, 101, 102, 105, 108, 127, 131, 132, 133, 134, 135, 136, 137, 139, 142, 143, 144, 148, 151, 153, 156, 158, 159, 160, 162, 167, 180, 195, 203, 216, 226, 230, 239, 240, 241, 244], "rais": [1, 4, 10, 54, 55, 61, 62, 71, 79, 85, 94, 97, 99, 101, 105, 108, 121, 122, 126, 131, 132, 133, 134, 135, 136, 137, 141, 143], "except": [1, 2, 5, 7, 8, 13, 15, 52, 54, 61, 101, 113, 126, 142, 143, 144, 149, 159, 163, 186, 240], "stack": [1, 13, 15, 115, 144], "trace": [1, 13, 15, 144], "still": [1, 7, 116, 141, 142, 143], "16": [1, 4, 141, 149, 160, 216, 236], "There": [1, 2, 4, 7, 9, 10, 11, 141, 156, 159, 180, 203, 226, 232], "singl": [1, 4, 7, 8, 11, 77, 117, 132, 141, 143, 148, 151, 153, 156, 159, 160, 174, 180], "place": [1, 11, 56, 112, 116, 117, 141, 144, 152, 166, 167, 200, 206, 207, 209, 217, 220, 221, 222, 223, 226, 227, 228, 230, 237, 247], "where": [1, 2, 5, 7, 45, 46, 47, 52, 61, 77, 78, 98, 109, 110, 112, 114, 115, 116, 117, 126, 127, 141, 142, 143, 144, 152, 156, 158, 159, 161, 174, 180, 203, 226, 230, 231, 235, 236, 238], "yet": [1, 2, 5, 62, 66, 141, 142, 144, 147, 171], "wai": [1, 2, 4, 7, 8, 10, 11, 141, 143, 158, 159, 180, 203], "creat": [1, 2, 3, 5, 7, 9, 11, 52, 55, 56, 73, 75, 82, 116, 117, 124, 127, 140, 141, 143, 148, 152, 153, 158, 183, 184, 186], "later": [1, 4, 7, 9, 11, 57, 80, 81, 141, 143, 144, 148, 165, 174, 180, 203, 229], "determin": [1, 52, 55, 60, 76, 77, 78, 109, 110, 114, 116, 127, 141, 142, 143, 144, 148, 155, 156, 159, 162, 165, 166, 167, 205, 210, 218, 219, 220, 221, 222, 223, 224, 225, 226, 230, 231, 234, 236, 237, 238, 239, 240, 242, 243, 244, 245, 246], "how": [1, 85, 105, 106, 141, 142, 143, 144, 148, 153, 156, 162, 168], "those": [1, 2, 5, 7, 8, 9, 11, 108, 140, 148, 159, 167, 203, 212], "capabl": [1, 10, 11, 144, 148, 151, 153], "oper": [1, 4, 7, 11, 45, 61, 64, 80, 81, 83, 84, 142, 143, 144, 151, 153, 156], "like": [1, 2, 4, 5, 7, 11, 77, 127, 132, 133, 136, 141, 142, 143, 144, 148, 158, 230, 246], "prevou": 1, "requri": 1, "modul": [1, 2, 4, 11, 19, 140, 142, 147, 160, 162, 170, 171], "import": [1, 3, 4, 7, 10, 11, 64, 141, 143, 153, 183, 184, 203, 236], "see": [1, 2, 4, 5, 7, 8, 10, 13, 60, 85, 105, 106, 119, 124, 138, 141, 142, 144, 148, 149, 151, 152, 153, 154, 156, 158, 159, 161, 162, 163, 174, 179, 198, 200, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 247], "immedi": [1, 4, 7], "algorithm": [1, 4, 5, 7, 8, 9, 11, 145, 176, 201, 204, 218, 219], "formul": [1, 3, 4, 5, 7, 8, 9, 11, 186], "design": [1, 2, 4, 5, 7, 8, 9, 10, 11, 140, 143, 147, 170, 171, 187], "solut": [1, 4, 5, 7, 8, 9, 11, 141], "base": [1, 7, 15, 19, 52, 55, 60, 77, 78, 93, 100, 106, 109, 116, 117, 141, 142, 143, 144, 148, 151, 152, 156, 158, 159, 161, 180, 181, 183, 184, 186, 198, 212, 236, 239, 247], "class": [1, 4, 9, 10, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 60, 61, 64, 72, 73, 75, 109, 123, 124, 126, 130, 138, 143, 148, 203], "analysistask": [1, 8, 13, 14, 15, 17, 19, 45, 46, 47, 64, 72, 109, 124, 138, 141, 143, 203], "under": [1, 3, 4, 46, 47, 141, 142, 143, 144, 148, 149, 153, 156, 165, 172, 177, 203, 206, 207, 226], "share": [1, 4, 5, 7, 8, 11, 27, 140, 141, 144, 152, 153, 203], "analysis_task": [1, 3, 203], "method": [1, 2, 3, 4, 5, 7, 8, 9, 10, 13, 15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 60, 61, 64, 72, 73, 75, 82, 109, 123, 124, 126, 130, 138, 142, 144, 148, 153, 158, 174, 176, 180, 181, 183, 184, 186, 191], "__init__": [1, 3, 9, 11, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 61, 64, 72, 109, 123, 124, 126, 130, 138, 141, 143, 203], "construct": [1, 5, 8, 9, 11, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 57, 61, 64, 72, 109, 123, 124, 126, 138, 141, 143], "assign": [1, 167], "variabl": [1, 3, 4, 5, 6, 9, 10, 27, 33, 34, 35, 36, 41, 45, 46, 47, 51, 52, 57, 61, 62, 64, 72, 73, 77, 78, 85, 99, 105, 106, 108, 109, 110, 123, 124, 126, 129, 138, 140, 141, 142, 143, 144, 179, 182, 186, 191, 195, 203, 208, 229, 235], "stream": [1, 4, 10, 52, 60, 61, 62, 93, 94, 95, 96, 97, 134, 142, 143, 144, 147, 169, 170, 171, 183, 184, 203], "map": [1, 4, 5, 6, 7, 9, 20, 72, 82, 109, 110, 111, 112, 114, 115, 116, 117, 123, 140, 141, 142, 143, 144, 148, 149, 150, 156, 158, 159, 163, 177, 196, 203, 205, 206, 207, 208, 209, 210, 211, 212, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 230, 236], "setup_and_check": [1, 8, 13, 15, 159, 203], "common": [1, 8, 109, 141, 142, 143, 144, 148, 152, 158, 162, 165, 167, 180, 203], "read": [1, 5, 7, 9, 60, 61, 64, 71, 73, 85, 98, 99, 100, 105, 126, 141, 142, 143, 144, 156, 203, 232, 233, 236, 240], "namelist": [1, 4, 10, 52, 54, 60, 98, 142, 143, 144, 147, 169, 170, 171], "version": [1, 9, 11, 55, 64, 85, 141, 142, 143, 144, 153, 179, 180, 181, 182, 183, 184, 186, 191, 195, 198, 199, 203], "doe": [1, 5, 7, 10, 11, 77, 78, 79, 95, 99, 101, 102, 116, 117, 121, 122, 141, 143, 144, 147, 153, 159, 163, 169, 171, 180, 230, 236], "noth": [1, 5], "show": [1, 111, 117, 141, 143, 159, 226, 236, 237, 240], "up": [1, 2, 4, 8, 53, 56, 60, 62, 71, 81, 112, 141, 142, 143, 148, 151, 153, 162, 165, 167, 203, 206, 207, 213, 226, 228, 229, 236, 239], "child": 1, "decend": 1, "It": [1, 3, 4, 5, 7, 8, 9, 11, 57, 141, 142, 143, 163, 174, 176, 180, 181, 182, 195, 198, 203, 241], "tasknam": [1, 7, 52, 55, 61, 64, 124, 126, 138, 141, 143], "componentnam": [1, 52, 55, 61, 64, 80, 81, 84, 124, 126, 138, 141, 143], "categori": [1, 2, 59], "call": [1, 4, 5, 7, 8, 11, 13, 15, 52, 60, 62, 64, 127, 141, 142, 143, 144, 153, 180, 203, 226], "": [1, 4, 7, 8, 9, 15, 64, 72, 85, 99, 105, 111, 116, 117, 119, 120, 132, 141, 142, 143, 144, 147, 148, 150, 156, 162, 170, 171, 172, 176, 178, 179, 183, 184, 195, 196, 200, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 230, 231, 235, 236, 237, 241], "constructor": 1, "first": [1, 2, 4, 7, 8, 11, 27, 42, 52, 60, 85, 94, 97, 99, 116, 117, 119, 127, 141, 142, 143, 144, 148, 149, 156, 163, 164, 166, 177, 186, 195, 203, 216, 231, 236, 238, 239, 240, 242, 243, 244, 245, 246], "configur": [1, 3, 7, 10, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 60, 61, 79, 80, 81, 82, 83, 84, 85, 100, 109, 112, 113, 114, 115, 116, 117, 119, 120, 123, 126, 140, 141, 143, 147, 148, 149, 150, 151, 152, 153, 155, 156, 158, 159, 160, 161, 162, 163, 164, 165, 169, 203], "e": [1, 2, 3, 4, 5, 7, 8, 10, 11, 45, 52, 57, 60, 64, 72, 86, 87, 109, 116, 129, 141, 142, 143, 144, 148, 156, 157, 158, 159, 161, 162, 163, 164, 165, 167, 174, 178, 186, 189, 193, 194, 203, 212, 226, 230, 231, 236, 237, 238, 240, 242, 243, 244, 245], "g": [1, 2, 3, 4, 5, 7, 8, 10, 11, 45, 52, 57, 60, 64, 86, 87, 109, 116, 129, 141, 142, 143, 144, 148, 156, 157, 158, 159, 161, 162, 163, 164, 165, 167, 193, 194, 203, 212, 226, 230, 231, 236, 237, 238, 240, 242, 243, 244, 245], "necessari": [1, 3, 7, 60, 82, 141, 143, 148, 153, 158, 203, 230], "locat": [1, 3, 9, 111, 119, 127, 141, 142, 144, 149, 152, 156, 159, 162, 167, 177, 203, 237, 239, 247], "mpas_analysi": [1, 3, 11, 140, 141, 142, 143, 144, 149, 152, 159, 162, 203], "analysis_task_templ": [1, 203], "That": [1, 141, 143, 151], "onli": [1, 3, 4, 5, 7, 8, 9, 10, 11, 54, 57, 62, 64, 77, 78, 85, 93, 98, 99, 105, 106, 108, 116, 117, 127, 130, 141, 142, 143, 144, 148, 153, 158, 159, 163, 165, 191, 194, 195, 199, 203, 205, 206, 207, 210, 217, 218, 219, 221, 223, 224, 225, 226, 228, 229, 232, 233, 234, 236, 237, 238, 239, 241], "directori": [1, 3, 4, 5, 7, 8, 11, 52, 83, 88, 100, 142, 143, 144, 153, 154, 161, 163, 177, 203, 230, 239], "easi": [1, 5, 11, 141, 180, 200, 224, 225], "find": [1, 141, 142, 143, 144, 156, 174, 176], "most": [1, 4, 10, 11, 52, 77, 78, 142, 143, 144, 147, 153, 156, 160, 162, 163, 168, 170, 171, 180, 203, 239, 246], "develop": [1, 2, 4, 7, 8, 11, 144, 156, 164, 179, 183, 184, 189, 248], "look": [1, 3, 5, 81, 142, 143, 144, 203], "itself": [1, 3, 7, 116, 117, 141, 142, 143], "refer": [1, 2, 4, 10, 11, 27, 43, 85, 105, 106, 109, 110, 117, 129, 131, 132, 133, 136, 140, 142, 143, 144, 149, 152, 159, 163, 168, 201, 202, 203, 204, 206, 207, 209, 210, 212, 213, 214, 215, 216, 218, 219, 220, 221, 222, 223, 224, 225, 226, 240, 241, 243, 245], "readm": [1, 3], "can": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 52, 53, 54, 64, 82, 114, 115, 116, 117, 119, 124, 134, 135, 136, 137, 138, 141, 142, 143, 144, 147, 148, 149, 150, 151, 152, 153, 156, 157, 158, 159, 160, 162, 163, 166, 167, 168, 170, 171, 172, 180, 203, 205, 208, 210, 218, 219, 220, 221, 222, 223, 224, 225, 226, 228, 230, 231, 233, 234, 235, 236, 237, 238, 239, 240, 241, 244, 246], "input": [1, 3, 5, 20, 52, 61, 126, 129, 140, 143, 147, 148, 158, 163, 168, 170, 171, 172, 195, 201, 202], "expect": [1, 2, 4, 7, 9, 10, 11, 61, 141, 143], "provid": [1, 3, 5, 12, 33, 77, 78, 106, 109, 110, 114, 116, 117, 141, 142, 143, 144, 150, 156, 158, 159, 163, 168, 173, 174, 175, 177, 178, 180, 185, 187, 193, 194, 196, 200, 218, 219, 224, 225, 230, 241, 244], "do": [1, 2, 4, 5, 7, 10, 11, 55, 58, 64, 85, 141, 142, 143, 144, 153, 157, 159, 167, 174, 203], "move": [1, 4, 5, 6, 7, 45, 116, 117, 119, 120, 140, 141, 156, 165, 168, 231, 233, 238, 239, 240, 242, 243, 244, 245, 246], "analys": [1, 2, 7, 8, 14, 15, 17, 141, 142, 144, 159, 183, 184, 191, 203], "clearer": [1, 141], "which": [1, 3, 4, 5, 7, 8, 11, 13, 20, 45, 46, 47, 52, 57, 62, 64, 71, 72, 80, 81, 82, 84, 85, 100, 106, 108, 109, 110, 113, 114, 115, 116, 117, 119, 120, 126, 127, 128, 129, 140, 141, 142, 143, 144, 148, 149, 150, 153, 156, 158, 159, 161, 163, 165, 167, 168, 173, 177, 179, 180, 181, 183, 184, 195, 196, 200, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 233, 234, 236, 238, 239, 240, 241, 242, 243, 244, 245, 246], "correspond": [1, 7, 11, 47, 59, 82, 113, 116, 117, 119, 120, 162, 167, 203, 212, 230, 231, 234, 235, 236, 238, 240, 241, 242, 243, 244, 245], "addit": [1, 4, 7, 10, 11, 60, 116, 130, 141, 143, 147, 156, 160, 170, 171, 177, 183, 184, 191, 195, 200, 203, 234, 236, 239, 244], "startdat": [1, 4, 61, 85, 97, 99, 126, 129], "enddat": [1, 4, 61, 85, 97, 99, 126, 129], "try": [1, 3, 7, 8, 141, 144, 203], "around": [1, 5, 7, 10, 111, 115, 141, 151, 180, 190, 201, 202, 237, 244], "sure": [1, 2, 3, 4, 7, 8, 11, 54, 141, 142, 143, 144, 153, 163, 203], "execut": [1, 5, 7, 140, 151, 156, 168], "By": [1, 116, 117, 119, 143, 148, 149, 152, 153, 156, 157, 163, 165, 166, 216, 218, 219, 221, 223, 232, 233, 234, 236, 238, 241], "have": [1, 2, 4, 5, 7, 8, 9, 10, 11, 77, 78, 95, 100, 112, 116, 117, 119, 141, 142, 143, 144, 147, 151, 152, 153, 156, 157, 159, 162, 163, 167, 171, 172, 175, 180, 191, 196, 199, 203, 230, 239, 241], "gener": [1, 2, 3, 6, 7, 8, 11, 12, 13, 15, 18, 19, 33, 52, 55, 140, 141, 142, 143, 144, 150, 151, 152, 153, 154, 162, 163, 176, 178, 180, 187, 229, 230, 240], "command": [1, 2, 7, 11, 15, 18, 141, 142, 144, 153, 159, 203], "line": [1, 2, 7, 15, 18, 112, 113, 114, 116, 117, 119, 120, 141, 142, 144, 153, 159, 200, 203, 214, 229, 231, 233, 237, 238, 240, 241, 243, 245, 247], "so": [1, 2, 3, 4, 5, 7, 11, 45, 53, 62, 64, 77, 78, 116, 117, 141, 142, 143, 144, 151, 152, 153, 156, 159, 162, 163, 167, 180, 203, 237, 238, 241, 246], "its": [1, 3, 7, 8, 11, 13, 141, 142, 143, 144, 149, 152, 162, 186, 203, 226, 230, 231, 234, 235, 236, 238, 241], "right": [1, 111, 116, 117, 141, 142, 143, 240], "warn": [1, 54, 141, 148, 156, 159], "pass": [1, 103, 116, 117, 141, 143, 159], "loop": [1, 141, 143], "through": [1, 4, 5, 7, 9, 13, 44, 141, 143, 144, 150, 153, 156, 158, 159, 168, 176, 179, 186, 191, 203, 246], "some": [1, 7, 8, 11, 57, 73, 77, 78, 117, 141, 142, 143, 144, 148, 153, 156, 157, 159, 163, 167, 199, 203, 230, 241], "extra": [1, 64, 77, 78, 116, 148], "argument": [1, 4, 11, 103, 116, 117, 127, 129, 141, 142, 143, 149], "field": [1, 2, 3, 4, 5, 9, 31, 46, 47, 53, 64, 66, 67, 68, 69, 72, 74, 77, 78, 80, 81, 86, 87, 109, 110, 113, 116, 117, 141, 143, 147, 148, 149, 170, 171, 180, 186, 191, 193, 195, 198, 199, 206, 207, 208, 212, 217, 226, 227, 228, 231, 235, 236, 237, 240, 241, 246, 247], "analyz": [1, 2, 5, 33, 142, 143, 144, 156, 163, 176, 198, 203, 206, 207, 226, 228], "ocean": [1, 2, 3, 5, 7, 52, 61, 80, 81, 84, 126, 140, 141, 142, 143, 144, 145, 148, 156, 159, 161, 162, 165, 167, 168, 172, 174, 179, 180, 181, 182, 186, 189, 191, 193, 196, 197, 199, 200, 202, 203, 205, 206, 207, 208, 209, 211, 212, 213, 214, 215, 216, 217, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 245, 246, 247], "modelvsob": 1, "These": [1, 11, 52, 141, 142, 143, 144, 147, 149, 150, 151, 153, 159, 170, 171, 177, 195, 196, 200, 203, 210, 218, 219, 224, 225, 226, 230, 239, 246], "store": [1, 4, 5, 7, 9, 10, 110, 127, 141, 143, 144, 152, 153, 158, 161, 162, 180, 201, 202, 203, 237, 239], "member": [1, 7, 9, 33, 35, 37, 54, 61, 64, 126, 143, 147, 170, 171, 180], "access": [1, 142, 143, 144, 180, 181, 186, 193, 195], "via": [1, 3, 4, 5, 7, 9, 11, 81, 116, 140, 177, 178], "self": [1, 8, 9, 55, 56, 141, 143], "varnam": 1, "branch": [1, 4, 5, 7, 8, 9, 10, 11, 142, 203], "tree": [1, 4, 5, 7, 10], "here": [1, 2, 4, 7, 11, 14, 19, 141, 142, 143, 144, 152, 161, 163, 179, 180, 196], "suggest": [1, 7, 144, 147, 170, 171], "intend": [1, 5, 7, 116, 117, 143, 147, 170, 172, 213], "discuss": [1, 11, 143], "defin": [1, 8, 9, 46, 47, 52, 53, 109, 110, 116, 117, 123, 124, 138, 139, 142, 143, 144, 147, 160, 162, 167, 170, 171, 174, 203, 210, 218, 219, 220, 221, 222, 223, 224, 225, 230, 231, 235, 237, 239, 241, 246, 247], "author": [1, 7, 10, 141, 159, 174, 190, 199], "io": [1, 7, 52, 141, 143, 147, 170, 230], "streamsfil": [1, 52, 134], "util": [1, 4, 5, 10, 11, 143, 162, 191, 203], "build_config_full_path": [1, 7], "make_directori": [1, 7], "object": [1, 4, 8, 9, 10, 14, 15, 17, 76, 77, 78, 82, 85, 97, 106, 107, 108, 112, 123, 127, 130, 131, 132, 133, 134, 135, 137, 141, 143, 198, 203, 230], "def": [1, 4, 7, 8, 9, 10, 141, 143], "streammap": [1, 4], "none": [1, 4, 9, 14, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 39, 40, 41, 44, 45, 46, 47, 48, 49, 50, 51, 52, 61, 62, 64, 74, 76, 77, 78, 82, 85, 88, 93, 96, 97, 99, 100, 105, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 124, 126, 127, 129, 130, 138, 139, 141, 142, 143, 147, 152, 153, 163, 170, 171, 218, 219, 231, 240, 244], "variablemap": [1, 4, 85], "children": [1, 52, 60], "basic": [1, 52, 60, 141, 142, 143, 144, 189], "initi": [1, 5, 7, 8, 52, 142, 144, 145, 179, 201, 202, 209, 214, 227], "paramet": [1, 10, 13, 14, 15, 17, 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 56, 57, 59, 61, 62, 63, 64, 65, 66, 67, 68, 69, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 126, 127, 128, 129, 131, 132, 133, 134, 135, 136, 137, 138, 141, 143, 156, 167, 181], "instanc": [1, 10, 112, 113, 116, 117, 119, 120, 132, 137, 143, 151], "mpasanalysisconfigpars": [1, 32, 141], "contain": [1, 3, 5, 11, 14, 17, 18, 33, 37, 42, 43, 46, 47, 52, 59, 61, 77, 78, 79, 82, 85, 88, 97, 106, 107, 108, 112, 113, 114, 115, 116, 117, 119, 120, 126, 127, 129, 141, 142, 143, 144, 148, 152, 153, 155, 156, 158, 159, 160, 161, 162, 163, 165, 177, 179, 186, 195, 200, 203, 230, 231, 234, 235, 236, 241], "dict": [1, 19, 26, 33, 61, 64, 85, 98, 105, 106, 112, 116, 117, 123], "dictionari": [1, 7, 8, 9, 13, 15, 17, 61, 64, 85, 98, 105, 106, 112, 141, 149, 205, 206, 207, 209, 210, 217, 220, 221, 222, 223, 226, 227, 228, 230, 231, 235, 237, 241, 247], "o": [1, 3, 7, 141, 143, 144, 155, 159, 169, 193, 201, 202, 203, 208, 213, 226, 232], "name": [1, 2, 7, 8, 9, 10, 11, 17, 18, 19, 33, 45, 46, 47, 52, 54, 59, 61, 62, 64, 65, 66, 67, 68, 69, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 84, 85, 88, 93, 94, 95, 96, 97, 98, 99, 100, 105, 106, 108, 109, 110, 112, 113, 114, 115, 116, 117, 121, 122, 123, 124, 126, 127, 129, 136, 137, 138, 141, 142, 143, 144, 147, 149, 158, 159, 161, 162, 163, 164, 167, 170, 171, 189, 203, 205, 208, 226, 230, 231, 235, 237, 238, 240, 247], "counterpart": 1, "step": [1, 5, 8, 11, 60, 71, 141, 142, 143, 144, 186, 191], "after": [1, 7, 8, 53, 57, 60, 67, 68, 69, 74, 143, 148, 159, 203, 230, 237, 247], "follow": [1, 2, 3, 8, 9, 10, 11, 14, 19, 60, 85, 105, 106, 116, 117, 135, 136, 137, 141, 142, 143, 144, 147, 149, 158, 170, 171, 179, 186, 194, 195, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247], "indirectori": 1, "plotsdirectori": [1, 52, 60, 143], "plot": [1, 3, 4, 5, 8, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 44, 46, 47, 48, 49, 50, 52, 58, 72, 140, 141, 142, 143, 144, 150, 154, 159, 162, 163, 164, 165, 167, 168, 196, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247], "doesn": [1, 7, 11, 52, 83, 100, 127, 142, 143], "t": [1, 7, 8, 11, 52, 77, 78, 83, 100, 127, 141, 142, 143, 144, 151, 153, 159, 162, 236, 238], "reader": [1, 11, 52, 143], "calendar": [1, 6, 10, 11, 52, 60, 76, 77, 78, 85, 97, 99, 105, 106, 116, 117, 118, 119, 127, 129, 130, 131, 132, 133, 135, 136, 137, 140, 143], "gregorian": [1, 4, 10, 52, 76, 77, 78, 85, 97, 99, 105, 106, 116, 117, 127, 129, 130, 131, 132, 133, 136, 137], "gregoraian_noleap": [1, 52, 129], "setup": [1, 8, 53, 60, 71, 143], "correct": [1, 60, 106, 195], "specif": [1, 2, 4, 10, 11, 13, 60, 106, 130, 142, 143, 144, 153, 156, 159, 183, 184, 196, 203], "could": [1, 5, 7, 8, 9, 60, 143, 144, 159, 180, 205, 217, 226], "found": [1, 2, 10, 11, 54, 60, 85, 94, 95, 96, 97, 99, 105, 114, 115, 116, 117, 125, 134, 141, 142, 143, 144, 147, 152, 153, 159, 168, 170, 171, 180, 203, 205, 239], "get": [1, 7, 53, 56, 64, 75, 79, 80, 81, 83, 84, 86, 87, 90, 91, 92, 96, 100, 121, 122, 124, 138, 140, 143, 148, 151, 152, 156, 203, 234, 236, 241], "basedirectori": [1, 100, 142, 144, 152, 156, 158, 159, 161, 163, 203, 226], "output": [1, 3, 4, 5, 7, 33, 34, 35, 38, 39, 40, 41, 42, 43, 45, 46, 47, 51, 52, 56, 61, 64, 72, 82, 93, 97, 109, 110, 124, 126, 127, 138, 140, 141, 147, 148, 152, 153, 154, 156, 158, 160, 163, 168, 169, 170, 171, 194, 195, 208, 226, 230, 231, 235, 236, 237, 238, 239, 240, 242, 243, 244, 245, 247], "plotssubdirectori": [1, 159], "namelistfilenam": 1, "oceannamelistfilenam": [1, 142, 144, 156], "path": [1, 3, 7, 33, 45, 63, 68, 69, 74, 85, 88, 93, 99, 100, 101, 102, 105, 127, 141, 142, 143, 144, 152, 156, 158, 159, 162, 163, 203, 226, 230], "streamsfilenam": 1, "oceanstreamsfilenam": [1, 142, 144, 156], "streamsdir": [1, 93], "config_calendar_typ": [1, 4, 10], "ani": [1, 2, 4, 5, 7, 8, 9, 11, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 34, 35, 36, 37, 38, 39, 40, 41, 44, 45, 46, 47, 48, 49, 50, 51, 66, 67, 87, 89, 107, 109, 111, 113, 126, 141, 142, 143, 144, 147, 148, 149, 153, 156, 158, 162, 163, 167, 169, 172, 174, 180, 194, 203, 230, 236, 237, 239, 241, 247], "return": [1, 4, 7, 8, 9, 10, 14, 15, 19, 45, 54, 55, 63, 66, 67, 68, 69, 73, 74, 75, 76, 77, 78, 82, 85, 86, 87, 89, 90, 91, 92, 94, 95, 96, 97, 98, 99, 100, 102, 103, 105, 106, 107, 108, 111, 112, 116, 117, 119, 120, 121, 122, 124, 127, 128, 129, 131, 132, 133, 134, 135, 136, 137, 138, 141, 143], "check_gener": [1, 2, 8, 13, 203], "own": [1, 11, 55, 142, 143, 230, 231, 234, 236, 238, 241], "bool": [1, 13, 15, 54, 55, 56, 64, 77, 78, 82, 90, 95, 98, 109, 115, 116, 117, 124, 141], "valueerror": [1, 10, 55, 62, 79, 85, 94, 97, 99, 105, 108, 121, 122, 131, 132, 133, 135, 136, 137, 141, 143], "one": [1, 3, 4, 5, 7, 10, 11, 47, 55, 57, 59, 61, 62, 64, 72, 76, 77, 78, 81, 85, 94, 97, 99, 105, 106, 109, 116, 117, 124, 127, 135, 136, 137, 141, 142, 143, 144, 149, 153, 156, 203, 210, 216, 218, 219, 220, 221, 222, 223, 224, 225, 226, 230, 231, 232, 235], "ha": [1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 13, 53, 55, 57, 62, 66, 67, 85, 95, 99, 105, 106, 141, 142, 143, 144, 147, 149, 152, 153, 159, 162, 163, 170, 171, 178, 180, 191, 195, 203, 209, 212, 214, 230, 231, 238, 240, 241, 246], "been": [1, 2, 4, 5, 7, 8, 9, 10, 11, 13, 55, 62, 66, 67, 106, 112, 116, 117, 141, 142, 143, 144, 147, 152, 153, 156, 159, 162, 163, 171, 178, 180, 191, 199, 203, 209, 214, 239, 240, 246], "membernam": 1, "hasattr": 1, "format": [1, 4, 7, 10, 116, 117, 118, 119, 135, 136, 137, 141, 174, 178, 200, 205, 230, 240], "isinst": 1, "string": [1, 10, 18, 52, 61, 68, 69, 74, 85, 97, 99, 105, 106, 108, 116, 117, 126, 135, 136, 137, 224, 225], "generatelist": 1, "getexpress": [1, 141, 143], "fals": [1, 7, 8, 9, 54, 64, 82, 95, 109, 113, 115, 116, 117, 124, 139, 141, 142, 144, 148, 156, 160, 205, 208, 210, 218, 219, 220, 221, 222, 223, 224, 225, 229, 231, 233, 238, 244], "element": [1, 116, 119, 196], "_": [1, 4, 109, 141, 143], "prefix": [1, 2, 7, 33, 46, 47, 72, 82, 109, 110, 162, 208, 210, 218, 219, 224, 225, 230, 231, 235, 240], "suffix": [1, 109, 112, 116, 117, 124, 138, 226, 238, 240], "split": [1, 2, 7], "1": [1, 3, 4, 5, 7, 11, 19, 111, 113, 114, 116, 117, 119, 120, 124, 127, 131, 139, 147, 148, 149, 151, 153, 155, 157, 165, 170, 173, 175, 176, 177, 180, 183, 184, 186, 193, 195, 196, 198, 199, 203, 205, 208, 210, 211, 212, 214, 215, 216, 218, 219, 220, 221, 222, 223, 224, 225, 229, 230, 231, 232, 233, 236, 237, 238, 239, 240, 242, 243, 244, 245, 246, 247, 248], "els": [1, 4, 7, 141, 142, 143, 144, 167], "allsuffix": 1, "nosuffix": 1, "true": [1, 7, 8, 13, 54, 56, 77, 78, 85, 95, 98, 109, 113, 115, 116, 117, 124, 141, 142, 143, 147, 148, 154, 156, 160, 170, 171, 210, 218, 219, 220, 221, 222, 223, 224, 225, 231, 233, 238, 244], "elif": 1, "vim": [1, 142], "foldmethod": 1, "marker": [1, 113, 119, 120], "ai": 1, "4": [1, 3, 4, 7, 34, 113, 116, 145, 151, 153, 155, 159, 162, 180, 191, 195, 196, 201, 202, 210, 218, 219, 225, 232, 236, 237, 238, 240, 247, 248], "st": 1, "et": [1, 145, 172, 173, 175, 176, 179, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 192, 193, 194, 195, 196, 198, 199, 201, 202, 204, 205, 214, 217, 221, 223, 239], "sw": 1, "ft": 1, "And": [1, 141], "copi": [1, 4, 106, 107, 108, 116, 117, 142, 143, 144, 152, 160, 172, 200, 203], "compon": [1, 2, 3, 4, 10, 52, 61, 80, 81, 84, 123, 126, 140, 141, 142, 143, 144, 156, 159, 162, 163, 169, 170, 183, 184, 194, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247], "folder": [1, 52, 61, 126, 158, 160, 168, 203], "sea_ic": [1, 4, 203], "land_ic": 1, "etc": [1, 2, 3, 10, 40, 130, 142, 144, 156, 159, 160, 203, 231, 235], "don": [1, 8, 77, 78, 141, 142, 143, 162], "forget": [1, 141, 142], "remov": [1, 2, 4, 7, 8, 11, 107, 141, 142, 189, 231, 235, 236, 241], "rel": [1, 5, 7, 10, 11, 88, 93, 100, 130, 142, 143, 144, 156, 158, 163, 189, 230], "dot": [1, 86, 113, 114, 115, 116, 117, 119, 120, 160], "mytask": [1, 52, 203], "describ": [1, 2, 3, 8, 9, 11, 52, 64, 75, 79, 121, 122, 141, 142, 143, 144, 176, 179, 186, 203, 210, 218, 219, 224, 225, 231, 235], "mm": [1, 10, 135, 136, 137, 142, 144], "dd": [1, 10, 135, 136, 137, 142, 144], "yyyi": [1, 10, 135, 136, 137, 142, 144], "myarg": [1, 203], "mydefaultvalu": 1, "mynewarg": 1, "str": [1, 18, 33, 45, 46, 47, 52, 54, 59, 61, 62, 63, 64, 65, 66, 67, 68, 69, 72, 73, 74, 75, 80, 81, 82, 84, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 98, 99, 100, 101, 102, 103, 109, 110, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 126, 127, 129, 131, 132, 133, 134, 136, 137, 138, 141, 143, 230], "arg": [1, 7, 103], "super": [1, 117, 141, 142, 143], "next": [1, 7, 8, 141, 143, 159, 174, 210, 218, 219, 220, 221, 222, 223, 224, 225], "timeseri": [1, 4, 52, 59, 126, 156, 159, 165, 203, 229, 232, 238, 239, 240, 241, 242, 243, 244, 245, 246], "climatologymap": 1, "category1": 1, "category2": 1, "would": [1, 2, 3, 4, 5, 7, 9, 10, 11, 141, 142, 143, 144, 148, 151, 152, 159, 163, 203, 230, 240, 241], "thing": [1, 141, 143, 144], "region": [1, 3, 9, 20, 21, 32, 36, 38, 40, 46, 47, 111, 116, 117, 140, 141, 142, 143, 144, 148, 149, 152, 153, 156, 168, 174, 178, 185, 196, 203, 205, 229, 231, 232, 235, 238, 240, 242, 243, 245, 246], "month": [1, 4, 10, 45, 68, 69, 74, 76, 77, 78, 127, 128, 129, 130, 131, 141, 142, 143, 144, 147, 148, 153, 157, 164, 170, 175, 180, 196, 205, 206, 207, 209, 210, 211, 212, 213, 214, 217, 218, 219, 224, 225, 226, 227, 228, 231, 238, 239, 240, 242, 243, 244, 245, 246], "season": [1, 3, 61, 62, 63, 64, 66, 67, 68, 69, 72, 74, 77, 80, 81, 84, 109, 140, 141, 142, 143, 144, 148, 153, 157, 168, 175, 179, 199, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 230, 234, 235, 236, 237, 247], "same": [1, 2, 4, 7, 8, 9, 10, 11, 52, 61, 66, 67, 76, 77, 78, 85, 116, 117, 119, 126, 127, 141, 142, 143, 144, 151, 152, 156, 162, 163, 177, 180, 200, 203, 212, 213, 214, 234, 236, 240], "subclass": [1, 9, 10, 73, 75, 130, 143], "sever": [1, 2, 3, 7, 8, 9, 11, 142, 143, 144, 147, 148, 151, 159, 162, 164, 165, 167, 168, 170, 171, 173, 177, 180, 187, 191, 234, 236], "differ": [1, 2, 3, 9, 10, 11, 33, 85, 109, 110, 114, 115, 116, 117, 130, 141, 142, 143, 144, 148, 149, 151, 153, 156, 163, 165, 168, 180, 183, 184, 186, 194, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 230, 231, 237, 239, 241, 247], "potenti": [1, 5, 23, 43, 107, 143, 148, 191, 194, 207, 217, 226, 228, 230, 231, 235, 236, 237, 241, 245, 246, 247], "invalid": [1, 5, 10, 116, 117, 131, 132, 133, 135, 136, 137, 148], "valu": [1, 4, 5, 7, 8, 37, 46, 47, 61, 77, 78, 85, 86, 87, 89, 90, 91, 92, 96, 98, 105, 106, 109, 110, 112, 114, 116, 117, 119, 127, 141, 142, 143, 144, 147, 148, 149, 155, 156, 158, 160, 165, 167, 168, 170, 171, 176, 196, 203, 205, 206, 207, 211, 212, 213, 214, 215, 216, 218, 219, 224, 225, 226, 228, 229, 230, 232, 233, 236, 237, 238, 240, 241, 243, 245, 247], "possiblearg": 1, "blah": 1, "stuff": 1, "note": [1, 2, 4, 10, 97, 103, 116, 117, 127, 135, 136, 137, 142, 144, 153, 156, 159, 179, 194, 203, 228, 234, 237, 240, 241], "we": [1, 2, 4, 5, 7, 8, 9, 10, 11, 13, 141, 142, 143, 144, 149, 153, 159, 175, 178, 185, 187, 196, 200, 234, 236, 238], "re": [1, 5, 141, 142, 143, 144, 176, 179, 191, 203, 239], "go": [1, 141, 142, 143, 180, 203, 230], "long": [1, 10, 142, 143, 148, 165, 181, 229], "becaus": [1, 3, 4, 7, 9, 10, 11, 97, 106, 116, 117, 141, 142, 143, 144, 148, 153, 158, 163, 209, 214, 226, 229, 233, 236, 237], "confus": [1, 11, 143], "break": [1, 4, 8], "though": [1, 5, 7, 141, 143, 180, 203], "violat": [1, 4], "pep8": [1, 141, 142], "n": [1, 7, 141, 142, 144, 179, 186, 203, 238], "section": [1, 2, 8, 9, 33, 46, 47, 59, 100, 109, 110, 112, 113, 114, 115, 116, 117, 119, 120, 126, 141, 142, 143, 144, 145, 148, 151, 152, 153, 154, 155, 156, 158, 159, 160, 161, 163, 165, 201, 202, 203, 212, 226, 230, 231, 233, 234, 235, 236, 237, 240, 241, 247], "04d": [1, 4], "01": [1, 2, 4, 5, 10, 11, 76, 77, 78, 85, 105, 106, 131, 132, 133, 136, 147, 148, 170, 171, 203, 208, 230, 233, 237, 247], "01_00": [1, 10, 147, 170], "00": [1, 10, 85, 105, 106, 131, 132, 133, 136, 147, 170, 171], "getint": 1, "startyear": [1, 33, 59, 61, 126, 142, 143, 144, 148, 155, 156, 165, 203, 229], "has_opt": 1, "12": [1, 4, 8, 11, 119, 128, 129, 143, 144, 148, 153, 157, 160, 164, 180, 196, 213, 231, 237, 238, 240, 242, 243, 244, 245], "31_23": [1, 4], "59": [1, 4], "endyear": [1, 33, 59, 61, 126, 142, 144, 148, 155, 156, 165, 203, 229], "main": [1, 3, 7, 12, 27, 33, 72, 109, 117, 140, 141, 142, 143, 144, 149, 156, 159, 163, 167, 180, 203, 212, 229, 236, 248], "meat": 1, "goe": [1, 141, 163], "_my_sub_task": 1, "sometext": 1, "arg2": 1, "differenttext": 1, "you": [1, 141, 142, 143, 144, 150, 152, 153, 156, 158, 159, 160, 166, 174, 175, 176, 178, 185, 187, 194, 195, 196, 203, 218, 219, 226, 230, 232, 233, 239], "add": [1, 7, 8, 10, 11, 13, 53, 62, 64, 65, 76, 111, 124, 138, 141, 142, 143, 144, 153, 203, 230, 236, 238, 241], "helper": [1, 4, 10, 11, 141, 143], "meant": [1, 2, 11, 142, 143, 195], "non": [1, 11, 152, 174, 186, 195, 236], "public": [1, 3, 9, 11, 20, 142, 143, 144, 147, 148, 152, 156, 158, 159, 160, 162, 171, 175, 178, 180, 185, 187, 189, 194, 195, 196, 200, 236, 239], "underscor": [1, 2, 10, 135, 136, 137, 143], "mean": [1, 3, 4, 5, 7, 8, 40, 77, 78, 109, 119, 127, 128, 129, 141, 142, 143, 144, 153, 157, 167, 179, 180, 189, 191, 192, 196, 198, 205, 209, 214, 231, 233, 235, 238, 239], "anyon": [1, 11], "them": [1, 5, 7, 13, 45, 141, 143, 144, 152, 156, 166, 167, 194, 195, 217, 236, 237, 247], "outsid": [1, 4, 6, 109, 110, 114, 116, 117, 140, 141, 149], "typic": [1, 4, 5, 9, 11, 27, 52, 59, 72, 80, 81, 85, 99, 105, 106, 116, 117, 124, 127, 138, 142, 143, 144, 147, 148, 150, 151, 152, 153, 158, 162, 167, 170, 171, 213, 218, 219, 224, 225, 230, 237, 239, 244, 247], "won": [1, 7, 141, 143], "put": [1, 111, 142, 143, 144, 159], "much": [1, 3, 4, 5, 143, 148, 151, 153, 158], "either": [1, 4, 5, 7, 9, 10, 17, 18, 76, 115, 117, 132, 133, 135, 136, 137, 142, 144, 149, 150, 152, 153, 156, 158, 159, 160, 162, 163, 203, 236], "without": [1, 4, 5, 7, 11, 45, 77, 78, 127, 141, 142, 144, 147, 148, 153, 159, 169, 237], "default": [1, 3, 5, 7, 8, 46, 47, 54, 61, 64, 85, 110, 111, 113, 114, 115, 116, 117, 119, 120, 124, 126, 138, 141, 142, 143, 144, 148, 149, 151, 152, 153, 156, 157, 158, 159, 160, 163, 165, 166, 167, 168, 203, 206, 207, 209, 210, 213, 214, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 241, 246, 247], "save": [1, 5, 141, 163, 203, 230, 238], "back": [1, 4, 143, 180], "arg1": 1, "my": [1, 7, 11, 141, 230], "favor": [1, 10, 156], "subtask": [1, 6, 13, 15, 17, 45, 46, 47, 52, 53, 57, 61, 64, 72, 109, 123, 124, 126, 138, 140, 148, 151, 230, 236], "climatology_map": 1, "what": [1, 4, 7, 141, 142, 143, 159, 191, 203, 210, 218, 219, 220, 221, 222, 223, 224, 225], "fieldnam": [1, 231], "sst": [1, 3, 30, 41, 145, 158, 183, 201, 202, 216, 242], "mld": [1, 3, 25, 26, 145, 158, 201, 202, 211, 212], "sss": [1, 3, 29, 145, 158, 201, 202, 215], "support": [1, 2, 5, 6, 9, 10, 11, 33, 37, 64, 76, 77, 78, 85, 97, 99, 105, 106, 124, 127, 130, 136, 137, 140, 143, 144, 147, 150, 151, 152, 153, 156, 159, 160, 163, 168, 169, 170, 171, 172, 177, 226, 228, 229, 234, 236, 237, 238], "upperfieldnam": 1, "nino34": 1, "mht": [1, 145, 158, 201, 202, 233], "moc": [1, 20, 37, 238], "suppli": [1, 4, 5, 10, 11, 64, 77, 78, 97, 131, 132, 133, 135, 136, 137, 142, 143, 144, 152, 156, 158, 162, 230], "kei": [1, 17, 19, 33, 61, 62, 64, 72, 85, 86, 87, 89, 90, 91, 92, 98, 105, 106, 109, 123, 143, 149, 230, 231, 235], "oserror": [1, 7, 101], "climatologi": [1, 5, 6, 7, 8, 9, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35, 36, 37, 48, 49, 50, 52, 57, 59, 109, 127, 140, 141, 143, 145, 150, 153, 156, 158, 159, 160, 163, 164, 168, 175, 177, 179, 181, 185, 186, 198, 201, 202, 203, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 233, 234, 235, 236, 237, 238, 241, 247], "code": [1, 4, 5, 7, 8, 11, 64, 124, 144, 162, 203, 224, 225, 234], "taken": [1, 7, 10, 113, 114, 115, 116, 117, 119, 120, 124, 127, 142, 143, 148, 163, 165, 167, 232, 236], "out": [1, 4, 7, 9, 11, 13, 15, 45, 77, 78, 109, 110, 141, 142, 143, 144, 147, 148, 151, 152, 153, 155, 156, 157, 159, 160, 163, 165, 170, 171, 200, 203, 229, 230, 231, 236, 237, 238, 239, 240, 242, 243, 244, 245, 246, 247], "simplifi": [1, 2, 11], "clarifi": 1, "insid": [1, 152, 156, 159], "block": [1, 8, 57, 141, 144], "catch": 1, "caus": [1, 7, 144, 203], "exit": [1, 7], "traceback": [1, 144], "print_exc": 1, "sy": [1, 4, 141], "stdout": [1, 7, 56], "dure": [1, 7, 11, 13, 15, 52, 53, 66, 142, 143, 147, 159, 170, 171, 200], "analysismodul": [1, 7], "anaysi": 1, "time_series_ohc": 1, "timeseriesohc": [1, 2], "append": [1, 7, 8, 116, 117, 141, 149, 203, 231, 235, 241], "oceanstreammap": 1, "oceanvariablemap": 1, "time_series_sst": 1, "timeseriessst": [1, 2, 140, 142, 144, 146, 159], "climatologymapocean": 1, "sea": [1, 2, 3, 5, 7, 28, 29, 30, 41, 49, 50, 51, 109, 140, 142, 143, 144, 145, 156, 161, 168, 175, 177, 178, 179, 181, 183, 184, 185, 186, 187, 191, 193, 196, 202, 204, 206, 207, 209, 214, 215, 216, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 232, 234, 236, 241, 242, 244, 246], "ic": [1, 2, 5, 7, 11, 38, 49, 50, 51, 140, 141, 142, 144, 145, 156, 161, 162, 168, 172, 183, 184, 190, 202, 204, 205, 206, 207, 210, 218, 219, 220, 221, 222, 223, 224, 225, 226, 229, 237, 244], "timeseriesseaic": 1, "seaicestreammap": 1, "seaicevariablemap": 1, "climatologymapseaic": 1, "subsequ": [1, 2, 5], "over": [1, 3, 7, 46, 47, 64, 72, 77, 78, 109, 110, 116, 117, 118, 119, 120, 127, 128, 129, 141, 142, 143, 144, 148, 149, 157, 165, 174, 176, 180, 189, 195, 196, 203, 205, 213, 229, 231, 233, 234, 235, 236, 238, 239, 240, 241, 242, 243, 244, 245, 246], "test": [1, 2, 4, 5, 7, 8, 9, 10, 11, 141, 142, 144, 152, 159], "10": [1, 7, 8, 11, 113, 116, 141, 142, 143, 148, 149, 150, 156, 160, 167, 176, 179, 180, 181, 193, 205, 208, 211, 212, 213, 214, 216, 226, 227, 238, 247, 248], "ideal": 1, "anoth": [1, 2, 7, 13, 109, 116, 141, 142, 143, 144, 149, 152, 159, 203, 210, 218, 219, 220, 221, 222, 223, 224, 225], "realist": 1, "happen": [1, 7, 142, 143], "befor": [1, 7, 8, 45, 52, 53, 57, 62, 66, 68, 69, 74, 141, 142, 143, 144, 147, 153, 158, 170, 171, 203], "merg": [1, 7, 145, 173, 183, 195, 201, 202, 216], "m": [1, 3, 4, 7, 141, 142, 143, 147, 167, 170, 171, 179, 181, 183, 184, 192, 199, 203, 206, 207, 208, 213, 228, 230, 231, 235, 237, 240, 241, 247], "count": [1, 140, 148, 168, 236], "feedback": 1, "probabl": [1, 5, 144, 173], "pr": [1, 7, 10], "chang": [1, 7, 8, 10, 141, 142, 143, 144, 145, 147, 152, 158, 159, 162, 170, 174, 201, 202, 203, 227], "issu": [1, 4, 7, 54, 144, 164, 174, 180], "aris": [1, 11], "far": [1, 7, 180], "subset": [1, 20, 108, 144, 180, 203, 226, 237, 239, 246], "expand": [1, 7, 103], "verifi": [1, 5, 7, 8], "routin": [1, 10, 232], "respect": [1, 4, 142, 144, 152, 177, 179, 180, 181, 196, 203, 231, 233, 238], "preprocess": [1, 2, 4, 11, 140, 142, 144, 163, 168, 240, 242], "gmpas_qu240": 1, "deliber": 1, "introduc": 1, "prevent": [1, 7, 8, 143, 151, 153, 156], "As": [1, 2, 7, 10, 141, 143, 151, 153], "state": [1, 31, 143, 144, 145, 147, 169, 180, 188, 200, 201, 202, 227, 236, 237, 241], "her": [1, 241], "hi": 1, "think": [1, 7, 141], "satisfi": [1, 180], "29": [2, 193, 215], "variou": [2, 4, 5, 8, 10, 11, 46, 142, 143, 144, 156, 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19, 142, 144, 174], "boolean": [2, 54, 90, 141], "flag": [2, 5, 7, 15, 18, 52, 64, 142, 144, 153, 203], "separ": [2, 3, 4, 5, 7, 10, 18, 135, 136, 137, 143, 149, 153, 156, 212, 237, 240, 241], "prefer": [2, 4, 142, 203, 216], "equival": [2, 142, 143, 144, 159, 203, 213, 240], "overrid": [2, 58, 66, 67, 73, 75, 141, 142, 144, 159, 236, 241], "02": [2, 4, 5, 7, 10, 11, 142, 144, 193, 215, 233, 237, 243, 247], "made": [2, 4, 11, 66, 67, 142, 143, 148, 162, 163, 172, 177, 183, 184, 185, 194, 203, 239], "simplif": 2, "more": [2, 7, 9, 11, 12, 62, 64, 94, 116, 117, 141, 142, 143, 144, 148, 149, 153, 156, 158, 179, 180, 183, 184, 203, 205, 206, 207, 208, 209, 211, 212, 213, 214, 215, 217, 226, 227, 228, 230, 231, 232, 233, 234, 235, 236, 238, 239, 240, 241, 242, 243, 245], "easili": [2, 4, 5, 10, 141, 163, 230], "To": [2, 3, 7, 9, 141, 142, 144, 149, 151, 153, 157, 159, 162, 163, 180, 203, 230, 232, 244], "extent": [2, 141, 145, 201, 204, 244], "possibl": [2, 3, 7, 8, 11, 61, 85, 141, 143, 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"module-mpas_analysis.shared.io.write_netcdf"]], "mpas_analysis.shared.io.write_netcdf": [[104, "module-mpas_analysis.shared.io.write_netcdf"]], "open_multifile_dataset() (in module mpas_analysis.shared.mpas_xarray.mpas_xarray)": [[105, "mpas_analysis.shared.mpas_xarray.mpas_xarray.open_multifile_dataset"]], "preprocess() (in module mpas_analysis.shared.mpas_xarray.mpas_xarray)": [[106, "mpas_analysis.shared.mpas_xarray.mpas_xarray.preprocess"]], "remove_repeated_time_index() (in module mpas_analysis.shared.mpas_xarray.mpas_xarray)": [[107, "mpas_analysis.shared.mpas_xarray.mpas_xarray.remove_repeated_time_index"]], "subset_variables() (in module mpas_analysis.shared.mpas_xarray.mpas_xarray)": [[108, "mpas_analysis.shared.mpas_xarray.mpas_xarray.subset_variables"]], "plotclimatologymapsubtask (class in mpas_analysis.shared.plot)": [[109, "mpas_analysis.shared.plot.PlotClimatologyMapSubtask"]], "__init__() (mpas_analysis.shared.plot.plotclimatologymapsubtask method)": [[109, "mpas_analysis.shared.plot.PlotClimatologyMapSubtask.__init__"]], "set_plot_info() (mpas_analysis.shared.plot.plotclimatologymapsubtask method)": [[110, "mpas_analysis.shared.plot.PlotClimatologyMapSubtask.set_plot_info"]], "add_inset() (in module mpas_analysis.shared.plot)": [[111, "mpas_analysis.shared.plot.add_inset"]], "setup_colormap() (in module mpas_analysis.shared.plot.colormap)": [[112, "mpas_analysis.shared.plot.colormap.setup_colormap"]], "plot_1d() (in module mpas_analysis.shared.plot)": [[113, "mpas_analysis.shared.plot.plot_1D"]], "plot_global_comparison() (in module mpas_analysis.shared.plot)": [[114, "mpas_analysis.shared.plot.plot_global_comparison"]], "plot_polar_comparison() (in module mpas_analysis.shared.plot)": [[115, "mpas_analysis.shared.plot.plot_polar_comparison"]], "plot_vertical_section() (in module mpas_analysis.shared.plot)": [[116, "mpas_analysis.shared.plot.plot_vertical_section"]], "plot_vertical_section_comparison() (in module mpas_analysis.shared.plot)": [[117, "mpas_analysis.shared.plot.plot_vertical_section_comparison"]], "plot_xtick_format() (in module mpas_analysis.shared.plot.ticks)": [[118, "mpas_analysis.shared.plot.ticks.plot_xtick_format"]], "timeseries_analysis_plot() (in module mpas_analysis.shared.plot)": [[119, "mpas_analysis.shared.plot.timeseries_analysis_plot"]], "timeseries_analysis_plot_polar() (in module mpas_analysis.shared.plot)": [[120, "mpas_analysis.shared.plot.timeseries_analysis_plot_polar"]], "get_cartopy_projection() (in module mpas_analysis.shared.projection)": [[121, "mpas_analysis.shared.projection.get_cartopy_projection"]], "get_pyproj_projection() (in module mpas_analysis.shared.projection)": [[122, "mpas_analysis.shared.projection.get_pyproj_projection"]], "computeregionmasks (class in mpas_analysis.shared.regions.compute_region_masks)": [[123, "mpas_analysis.shared.regions.compute_region_masks.ComputeRegionMasks"]], "__init__() (mpas_analysis.shared.regions.compute_region_masks.computeregionmasks method)": [[123, "mpas_analysis.shared.regions.compute_region_masks.ComputeRegionMasks.__init__"]], "computeregionmaskssubtask (class in mpas_analysis.shared.regions.compute_region_masks_subtask)": [[124, "mpas_analysis.shared.regions.compute_region_masks_subtask.ComputeRegionMasksSubtask"]], "__init__() (mpas_analysis.shared.regions.compute_region_masks_subtask.computeregionmaskssubtask method)": [[124, "mpas_analysis.shared.regions.compute_region_masks_subtask.ComputeRegionMasksSubtask.__init__"]], "get_feature_list() (in module mpas_analysis.shared.regions.compute_region_masks_subtask)": [[125, "mpas_analysis.shared.regions.compute_region_masks_subtask.get_feature_list"]], "mpastimeseriestask (class in mpas_analysis.shared.time_series)": [[126, "mpas_analysis.shared.time_series.MpasTimeSeriesTask"]], "__init__() (mpas_analysis.shared.time_series.mpastimeseriestask method)": [[126, "mpas_analysis.shared.time_series.MpasTimeSeriesTask.__init__"]], "cache_time_series() (in module mpas_analysis.shared.time_series)": [[127, "mpas_analysis.shared.time_series.cache_time_series"]], "compute_moving_avg() (in module mpas_analysis.shared.time_series)": [[128, "mpas_analysis.shared.time_series.compute_moving_avg"]], "compute_moving_avg_anomaly_from_start() (in module mpas_analysis.shared.time_series)": [[129, "mpas_analysis.shared.time_series.compute_moving_avg_anomaly_from_start"]], "mpasrelativedelta (class in mpas_analysis.shared.timekeeping.mpasrelativedelta)": [[130, "mpas_analysis.shared.timekeeping.MpasRelativeDelta.MpasRelativeDelta"]], "__init__() (mpas_analysis.shared.timekeeping.mpasrelativedelta.mpasrelativedelta method)": [[130, "mpas_analysis.shared.timekeeping.MpasRelativeDelta.MpasRelativeDelta.__init__"]], "date_to_days() (in module mpas_analysis.shared.timekeeping.utility)": [[131, "mpas_analysis.shared.timekeeping.utility.date_to_days"]], "datetime_to_days() (in module mpas_analysis.shared.timekeeping.utility)": [[132, "mpas_analysis.shared.timekeeping.utility.datetime_to_days"]], "days_to_datetime() (in module mpas_analysis.shared.timekeeping.utility)": [[133, "mpas_analysis.shared.timekeeping.utility.days_to_datetime"]], "get_simulation_start_time() (in module mpas_analysis.shared.timekeeping.utility)": [[134, "mpas_analysis.shared.timekeeping.utility.get_simulation_start_time"]], "string_to_datetime() (in module mpas_analysis.shared.timekeeping.utility)": [[135, "mpas_analysis.shared.timekeeping.utility.string_to_datetime"]], "string_to_days_since_date() (in module mpas_analysis.shared.timekeeping.utility)": [[136, "mpas_analysis.shared.timekeeping.utility.string_to_days_since_date"]], "string_to_relative_delta() (in module mpas_analysis.shared.timekeeping.utility)": [[137, "mpas_analysis.shared.timekeeping.utility.string_to_relative_delta"]], "computetransectmaskssubtask (class in mpas_analysis.shared.transects.compute_transect_masks_subtask)": [[138, "mpas_analysis.shared.transects.compute_transect_masks_subtask.ComputeTransectMasksSubtask"]], "__init__() (mpas_analysis.shared.transects.compute_transect_masks_subtask.computetransectmaskssubtask method)": [[138, "mpas_analysis.shared.transects.compute_transect_masks_subtask.ComputeTransectMasksSubtask.__init__"]], "compute_mpas_transect_masks() (in module mpas_analysis.shared.transects.compute_transect_masks_subtask)": [[139, "mpas_analysis.shared.transects.compute_transect_masks_subtask.compute_mpas_transect_masks"]]}})
\ No newline at end of file
+Search.setIndex({"alltitles": {"1 Setting up a Conda Environment": [[144, "setting-up-a-conda-environment"]], "1. Getting started": [[141, "getting-started"]], "1. Getting started on GitHub": [[142, "getting-started-on-github"]], "1. The big picture": [[143, "the-big-picture"]], "1.1 Forking MPAS-Analysis": [[142, "forking-mpas-analysis"]], "1.1 Installing Miniconda": [[144, "installing-miniconda"]], "1.1 MPAS output": [[143, "mpas-output"]], "1.2 Adding SSH keys": [[142, "adding-ssh-keys"]], "1.2 Analysis tasks": [[143, "analysis-tasks"]], "1.2 Creating a conda environment": [[144, "creating-a-conda-environment"]], "1.3 Activating the environment": [[144, "activating-the-environment"]], "1.3 Local git configuration": [[142, "local-git-configuration"]], "1.3 Shared framework": [[143, "shared-framework"]], "2 Downloading observations": [[144, "downloading-observations"]], "2. Cloning the repository": [[142, "cloning-the-repository"]], "2. The reference scripts": [[141, "the-reference-scripts"]], "2. Tour of an analysis task (ClimatologyMapOHCAnomaly)": [[143, "tour-of-an-analysis-task-climatologymapohcanomaly"]], "2.1 Attributes": [[143, "attributes"]], "2.2 Constructor": [[143, "constructor"]], "2.3 setup_and_check() method": [[143, "setup-and-check-method"]], "2005-2010 climatology from SOSE the Southern Ocean State Estimate (SOSE)": [[194, "climatology-from-sose-the-southern-ocean-state-estimate-sose"]], "3 Downloading an example run": [[144, "downloading-an-example-run"]], "3. Making a worktree": [[142, "making-a-worktree"]], "3. Selecting an existing task to copy": [[141, "selecting-an-existing-task-to-copy"]], "3. Tour of a subtask (RemapMpasOHCClimatology)": [[143, "tour-of-a-subtask-remapmpasohcclimatology"]], "3.1 Attributes": [[143, "id1"]], "3.2 Constructor": [[141, "id1"], [143, "id2"]], "3.3 setup_and_check() method": [[143, "id3"]], "3.4 run_task() method": [[143, "run-task-method"]], "3.5 customize_masked_climatology() method": [[143, "customize-masked-climatology-method"]], "4 Configuring MPAS-Analysis": [[144, "configuring-mpas-analysis"]], "4. Developing the task": [[141, "developing-the-task"]], "4. Making a conda environment": [[142, "making-a-conda-environment"]], "4. The full code for posterity": [[143, "the-full-code-for-posterity"]], "4.1 ClimatologyMapBSF class": [[141, "climatologymapbsf-class"]], "4.1 Installing Mambaforge": [[142, "installing-mambaforge"]], "4.1 [runs]": [[144, "runs"]], "4.2 Constructor": [[141, "constructor"]], "4.2 One-time Miniconda setup": [[142, "one-time-miniconda-setup"]], "4.2 [execute]": [[144, "execute"]], "4.3 Create a development environment": [[142, "create-a-development-environment"]], "4.3 [diagnostics]": [[144, "diagnostics"]], "4.3 setup_and_check() method": [[141, "setup-and-check-method"]], "4.4 Activating the environment": [[142, "activating-the-environment"]], "4.4 [input]": [[144, "input"]], "4.5 Switching worktrees": [[142, "switching-worktrees"]], "4.5 [output]": [[144, "output"]], "4.6 [climatology], [timeSeries] and [index]": [[144, "climatology-timeseries-and-index"]], "5 Running MPAS-Analysis": [[144, "running-mpas-analysis"]], "5. Developing a subtask": [[141, "developing-a-subtask"]], "5. Editing code": [[142, "editing-code"]], "5.1 RemapMpasBSFClimatology class": [[141, "remapmpasbsfclimatology-class"]], "5.3 setup_and_check() method": [[141, "id2"]], "5.4 customize_masked_climatology() method": [[141, "customize-masked-climatology-method"]], "6 Viewing the Output": [[144, "viewing-the-output"]], "6. Config options": [[141, "config-options"]], "6. Running MPAS-Analysis on a laptop": [[142, "running-mpas-analysis-on-a-laptop"]], "7 Troubleshooting": [[144, "troubleshooting"]], "7. Adding the task": [[141, "adding-the-task"]], "7. Running MPAS-Analysis on an E3SM supported machine": [[142, "running-mpas-analysis-on-an-e3sm-supported-machine"]], "7.1 Configuring MPAS-Analysis": [[142, "configuring-mpas-analysis"]], "7.1 Purging old Analysis": [[144, "purging-old-analysis"]], "7.1.1 [runs]": [[142, "runs"]], "7.1.2 [execute]": [[142, "execute"]], "7.1.3 [input]": [[142, "input"]], "7.1.4 [output]": [[142, "output"]], "7.1.5. [climatology], [timeSeries] and [index]": [[142, "climatology-timeseries-and-index"]], "7.2 Errors During Setup": [[144, "errors-during-setup"]], "7.2 Errors in Tasks": [[144, "errors-in-tasks"]], "7.2 Running MPAS-Analysis": [[142, "running-mpas-analysis"]], "7.3 Viewing the Output": [[142, "viewing-the-output"]], "8. The full code for posterity": [[141, "the-full-code-for-posterity"]], "API reference": [[12, "api-reference"]], "AVISO Absolute Dynamic Topography": [[177, "aviso-absolute-dynamic-topography"]], "Adding Contour Lines": [[149, "adding-contour-lines"]], "Algorithms": [[3, "algorithms"]], "Analysis Task Template": [[1, "analysis-task-template"]], "Analysis Tasks": [[146, "analysis-tasks"]], "Analysis tasks": [[12, "analysis-tasks"]], "Anomaly Reference Year": [[148, "anomaly-reference-year"], [165, "anomaly-reference-year"]], "Antarctic Seafloor Temperature and Salinity": [[192, "antarctic-seafloor-temperature-and-salinity"]], "Antarctic melt rates and fluxes": [[172, "antarctic-melt-rates-and-fluxes"], [188, "antarctic-melt-rates-and-fluxes"], [190, "antarctic-melt-rates-and-fluxes"]], "Argo Mixed Layer Depth (MLD) climatology": [[176, "argo-mixed-layer-depth-mld-climatology"]], "Authors": [[140, null]], "Base Class": [[12, "base-class"]], "Bibliography": [[3, "bibliography"]], "Bins": [[234, "bins"]], "Bins and Contour Intervals": [[236, "bins-and-contour-intervals"]], "CCHDO": [[200, "cchdo"]], "Climatology": [[12, "climatology"], [148, "climatology"]], "Colormaps": [[149, "colormaps"]], "Colormpas in Three Panel Plots": [[149, "colormpas-in-three-panel-plots"]], "Comparison Grids": [[150, "comparison-grids"]], "Computing climatologies": [[148, "computing-climatologies"]], "Config File Reorganization": [[2, "config-file-reorganization"]], "Configuration": [[168, "configuration"]], "Configuration Options": [[205, "configuration-options"], [206, "configuration-options"], [207, "configuration-options"], [208, "configuration-options"], [209, "configuration-options"], [210, "configuration-options"], [211, "configuration-options"], [212, "configuration-options"], [213, "configuration-options"], [214, "configuration-options"], [215, "configuration-options"], [216, "configuration-options"], [217, "configuration-options"], [218, "configuration-options"], [219, "configuration-options"], [220, "configuration-options"], [221, "configuration-options"], [222, "configuration-options"], [223, "configuration-options"], [224, "configuration-options"], [225, "configuration-options"], [226, "configuration-options"], [227, "configuration-options"], [228, "configuration-options"], [229, "configuration-options"], [230, "configuration-options"], [231, "configuration-options"], [232, "configuration-options"], [233, "configuration-options"], [234, "configuration-options"], [235, "configuration-options"], [236, "configuration-options"], [237, "configuration-options"], [238, "configuration-options"], [239, "configuration-options"], [240, "configuration-options"], [241, "configuration-options"], [242, "configuration-options"], [243, "configuration-options"], [244, "configuration-options"], [245, "configuration-options"], [246, "configuration-options"], [247, "configuration-options"]], "Continuous Colormaps": [[149, "continuous-colormaps"]], "Contributors": [[0, "contributors"]], "Customizing plots or creating new ones": [[203, "customizing-plots-or-creating-new-ones"]], "Dask threads": [[151, "id1"]], "Dask threads and subprocess count": [[151, "dask-threads-and-subprocess-count"]], "Depth Bounds": [[241, "depth-bounds"]], "Description": [[172, "description"], [173, "description"], [174, "description"], [175, "description"], [176, "description"], [177, "description"], [178, "description"], [179, "description"], [180, "description"], [181, "description"], [182, "description"], [183, "description"], [184, "description"], [185, "description"], [186, "description"], [187, "description"], [188, "description"], [189, "description"], [190, "description"], [191, "description"], [192, "description"], [193, "description"], [194, "description"], [195, "description"], [196, "description"], [197, "description"], [198, "description"], [199, "description"], [200, "description"]], "Design Documents": [[6, "design-documents"]], "Design and Implementation": [[3, "design-and-implementation"]], "Details on Each Data Set": [[201, "details-on-each-data-set"]], "Developer's guide": [[140, null]], "Developer: Getting Started": [[142, "developer-getting-started"]], "Developers: Adding a new analysis task": [[141, "developers-adding-a-new-analysis-task"]], "Developers: Understanding an analysis task": [[143, "developers-understanding-an-analysis-task"]], "Diagnostics": [[152, "diagnostics"]], "Diagnostics Directories": [[152, "diagnostics-directories"]], "Diagram Type": [[236, "diagram-type"]], "Download analysis input data": [[203, "download-analysis-input-data"]], "Downloading data": [[12, "downloading-data"]], "E3SM": [[147, "e3sm"], [169, "e3sm"]], "ERS SSTv4 Nino 3.4 Index": [[181, "ers-sstv4-nino-3-4-index"]], "Eddy Kinetic Energy Climatology Mapping": [[3, "eddy-kinetic-energy-climatology-mapping"]], "Errors on Missing Data": [[156, "errors-on-missing-data"]], "Example Result": [[205, "example-result"], [206, "example-result"], [207, "example-result"], [208, "example-result"], [209, "example-result"], [210, "example-result"], [211, "example-result"], [213, "example-result"], [214, "example-result"], [215, "example-result"], [216, "example-result"], [217, "example-result"], [218, "example-result"], [219, "example-result"], [220, "example-result"], [221, "example-result"], [222, "example-result"], [223, "example-result"], [224, "example-result"], [225, "example-result"], [226, "example-result"], [227, "example-result"], [228, "example-result"], [229, "example-result"], [230, "example-result"], [231, "example-result"], [232, "example-result"], [233, "example-result"], [234, "example-result"], [235, "example-result"], [236, "example-result"], [237, "example-result"], [238, "example-result"], [239, "example-result"], [240, "example-result"], [241, "example-result"], [242, "example-result"], [243, "example-result"], [244, "example-result"], [245, "example-result"], [246, "example-result"], [247, "example-result"]], "Execute": [[153, "execute"]], "Fields": [[230, "fields"]], "Files and Directories": [[158, "files-and-directories"]], "GLODAPv2": [[182, "glodapv2"]], "Generalize Calendar supported by Analysis": [[4, "generalize-calendar-supported-by-analysis"]], "Generalized Horizontal Interpolation in MPAS-Analysis": [[5, "generalized-horizontal-interpolation-in-mpas-analysis"]], "Generate Option": [[159, "generate-option"]], "Generating Documentation": [[203, "generating-documentation"]], "Geojson Files": [[230, "geojson-files"]], "HTML": [[154, "html"]], "HadISST Nino 3.4 Index": [[183, "hadisst-nino-3-4-index"]], "I/O Utilities": [[12, "i-o-utilities"]], "Ice Shelf and Region Names": [[239, "ice-shelf-and-region-names"]], "Ice area and extent time series: SSM/I derived": [[196, "ice-area-and-extent-time-series-ssm-i-derived"]], "Ice concentration: SSM/I, Bootstrap algorithm": [[178, "ice-concentration-ssm-i-bootstrap-algorithm"]], "Ice concentration: SSM/I, NASATeam algorithm": [[187, "ice-concentration-ssm-i-nasateam-algorithm"]], "IceSat Ice Thickness": [[185, "icesat-ice-thickness"]], "Iceberg Concentration: Altiberg": [[173, "iceberg-concentration-altiberg"]], "Index": [[155, "index"]], "Indexed Colormaps": [[149, "indexed-colormaps"]], "Input": [[156, "input"]], "Input Directories": [[156, "input-directories"]], "Installation for developers": [[203, "installation-for-developers"]], "Installation for users": [[203, "installation-for-users"]], "Instructions for creating a new analysis task": [[203, "instructions-for-creating-a-new-analysis-task"]], "Landschuetzerv2016 SOM-FFN": [[186, "landschuetzerv2016-som-ffn"]], "List Analysis": [[203, "list-analysis"]], "List of MPAS output files that are needed by MPAS-Analysis:": [[203, "list-of-mpas-output-files-that-are-needed-by-mpas-analysis"]], "MPAS Components and E3SM": [[147, "mpas-components-and-e3sm"]], "MPAS Ocean": [[147, "mpas-ocean"], [170, "mpas-ocean"]], "MPAS-Analysis": [[140, "mpas-analysis"]], "MPAS-Analysis Tasks": [[172, "mpas-analysis-tasks"], [173, "mpas-analysis-tasks"], [174, "mpas-analysis-tasks"], [175, "mpas-analysis-tasks"], [176, "mpas-analysis-tasks"], [177, "mpas-analysis-tasks"], [178, "mpas-analysis-tasks"], [179, "mpas-analysis-tasks"], [180, "mpas-analysis-tasks"], [181, "mpas-analysis-tasks"], [182, "mpas-analysis-tasks"], [183, "mpas-analysis-tasks"], [184, "mpas-analysis-tasks"], [185, "mpas-analysis-tasks"], [186, "mpas-analysis-tasks"], [187, "mpas-analysis-tasks"], [188, "mpas-analysis-tasks"], [189, "mpas-analysis-tasks"], [190, "mpas-analysis-tasks"], [191, "mpas-analysis-tasks"], [192, "mpas-analysis-tasks"], [193, "mpas-analysis-tasks"], [194, "mpas-analysis-tasks"], [195, "mpas-analysis-tasks"], [196, "mpas-analysis-tasks"], [197, "mpas-analysis-tasks"], [198, "mpas-analysis-tasks"], [199, "mpas-analysis-tasks"], [200, "mpas-analysis-tasks"]], "MPAS-Seaice": [[147, "mpas-seaice"], [171, "mpas-seaice"]], "Main Authors": [[0, "main-authors"]], "Mapping Files": [[152, "mapping-files"]], "Meridional Heat Transport (MHT)": [[197, "meridional-heat-transport-mht"]], "Mesh Name": [[156, "mesh-name"]], "Moving Average": [[157, "moving-average"]], "Moving variable mapping outside of mpas_xarray": [[11, "moving-variable-mapping-outside-of-mpas-xarray"]], "Namelist Files": [[156, "namelist-files"]], "Namelist and Streams Files": [[12, "namelist-and-streams-files"]], "Observations": [[201, "observations"], [205, "observations"], [206, "observations"], [207, "observations"], [208, "observations"], [209, "observations"], [210, "observations"], [211, "observations"], [214, "observations"], [215, "observations"], [216, "observations"], [217, "observations"], [218, "observations"], [219, "observations"], [221, "observations"], [223, "observations"], [224, "observations"], [225, "observations"], [227, "observations"], [228, "observations"], [232, "observations"], [233, "observations"], [234, "observations"], [236, "observations"], [237, "observations"], [239, "observations"], [241, "observations"], [244, "observations"], [247, "observations"]], "Ocean Observations": [[201, "ocean-observations"]], "Ocean tasks": [[12, "ocean-tasks"]], "Ocean, Sea Ice and Iceberg Observations": [[158, "ocean-sea-ice-and-iceberg-observations"]], "Other Config Options": [[234, "other-config-options"], [236, "other-config-options"], [241, "other-config-options"]], "Other Options": [[148, "other-options"], [230, "other-options"], [239, "other-options"], [246, "other-options"]], "Output": [[159, "output"]], "Output Directories": [[159, "output-directories"]], "Output Grids for Transects": [[167, "output-grids-for-transects"]], "PIOMAS Arctic Sea Ice Volume Reanalysis": [[189, "piomas-arctic-sea-ice-volume-reanalysis"]], "Parallel Mapping File Creation": [[153, "parallel-mapping-file-creation"]], "Parallel Mask Creation": [[153, "parallel-mask-creation"]], "Parallel Tasks": [[153, "parallel-tasks"]], "Parallelism in NCO": [[153, 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diff --git a/latest/users_guide/config/comparison_grids.html b/latest/users_guide/config/comparison_grids.html
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diff --git a/latest/users_guide/config/dask_threads.html b/latest/users_guide/config/dask_threads.html
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diff --git a/latest/users_guide/config/diagnostics.html b/latest/users_guide/config/diagnostics.html
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diff --git a/latest/users_guide/config/html.html b/latest/users_guide/config/html.html
index 44627484d..516dfe8ef 100644
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diff --git a/latest/users_guide/config/input.html b/latest/users_guide/config/input.html
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diff --git a/latest/users_guide/config/moving_average.html b/latest/users_guide/config/moving_average.html
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diff --git a/latest/users_guide/config/output.html b/latest/users_guide/config/output.html
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diff --git a/latest/users_guide/config/regions.html b/latest/users_guide/config/regions.html
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diff --git a/latest/users_guide/config/runs.html b/latest/users_guide/config/runs.html
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diff --git a/latest/users_guide/config/seasons.html b/latest/users_guide/config/seasons.html
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