feat(PRT): add scripts/notebooks for PRT examples #1446
Workflow file for this run
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| name: CI | |
| on: | |
| schedule: | |
| - cron: '0 2 * * *' # run at 2 AM UTC | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| - ci-* | |
| - PRT | |
| paths-ignore: | |
| - 'README.md' | |
| - 'DEVELOPER.md' | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| - PRT | |
| paths-ignore: | |
| - 'README.md' | |
| - 'DEVELOPER.md' | |
| jobs: | |
| zip_files: | |
| name: zip input files | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| env: | |
| script-directory: scripts | |
| etc-directory: etc | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout MODFLOW6 examples repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Print python version | |
| run: | | |
| python --version | |
| - name: Install Python packages | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -r requirements.pip.txt | |
| pip install -r requirements.usgs.txt | |
| working-directory: ${{env.etc-directory}} | |
| - name: Update flopy MODFLOW 6 classes | |
| run: | | |
| import flopy | |
| flopy.mf6.utils.generate_classes(owner="aprovost-usgs", ref="PRT", backup=False) | |
| shell: python | |
| - name: Install MODFLOW executables release | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install MODFLOW nightly-build executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Run scripts without model runs | |
| run: | | |
| pytest -v -n=auto --durations=0 ci_build_files.py | |
| working-directory: ${{env.etc-directory}} | |
| - name: zip input files | |
| run: | | |
| import shutil | |
| shutil.make_archive("modflow6-examples", "zip", "examples") | |
| shell: python | |
| - name: Upload build artifacts for current release | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: zip_files | |
| path: | | |
| ./modflow6-examples.zip | |
| build: | |
| name: current-build | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| env: | |
| script-directory: scripts | |
| etc-directory: etc | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout MODFLOW6 examples repo | |
| uses: actions/checkout@v3 | |
| - name: Install TeX Live and additional TrueType fonts | |
| run: | | |
| sudo apt-get update | |
| sudo apt install texlive-latex-extra texlive-science fonts-liberation | |
| - name: Checkout usgslatex | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: MODFLOW-USGS/usgslatex | |
| path: usgslatex | |
| - name: Install USGS LaTeX style files and Univers font | |
| working-directory: usgslatex/usgsLaTeX | |
| run: sudo ./install.sh --all-users | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Python packages | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -r requirements.pip.txt | |
| pip install -r requirements.usgs.txt | |
| working-directory: ${{env.etc-directory}} | |
| - name: Update flopy MODFLOW 6 classes | |
| run: | | |
| import flopy | |
| flopy.mf6.utils.generate_classes(owner="aprovost-usgs", ref="PRT", backup=False) | |
| shell: python | |
| - name: Install MODFLOW executables release | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install MODFLOW 6 PRT build | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| owner: aprovost-usgs | |
| repo: modflow6 | |
| - name: Run scripts | |
| run: pytest -v -n=auto --durations=0 --run=True ci_build_files.py | |
| working-directory: ${{env.etc-directory}} | |
| - name: Run processing script | |
| run: python process-scripts.py | |
| working-directory: ${{env.script-directory}} | |
| - name: Build mf6examples LaTeX document | |
| shell: python | |
| run: | | |
| import sys | |
| import subprocess | |
| ws = "./doc/" | |
| bibnam = "mf6examples" | |
| texnam = bibnam + ".tex" | |
| args = ( | |
| ("pdflatex", texnam), | |
| ("bibtex", bibnam), | |
| ("pdflatex", texnam), | |
| ("pdflatex", texnam), | |
| ) | |
| for arg in args: | |
| print("running command...'{}'".format(" ".join(arg))) | |
| with subprocess.Popen(arg, | |
| stdout=subprocess.PIPE, | |
| stderr=subprocess.STDOUT, | |
| cwd=ws) as process: | |
| stdout, stderr = process.communicate(timeout=120) | |
| if stdout: | |
| stdout = stdout.decode() | |
| print(stdout) | |
| if stderr: | |
| print("\n\nError condition occurred:\n") | |
| stderr = stderr.decode() | |
| print(stderr) | |
| - name: Rename and move the LaTeX document | |
| run: | | |
| ls -l ./doc/ | |
| mv ./doc/mf6examples.pdf mf6examples.pdf | |
| ls -l ./ | |
| - name: Upload build artifacts for current release | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: current | |
| path: | | |
| ./mf6examples.pdf | |
| # make the release if the "build" job was successful | |
| release: | |
| name: Make the release | |
| needs: [ zip_files, build ] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout MODFLOW6 examples repo | |
| uses: actions/checkout@v3 | |
| - name: Get Current Time | |
| uses: josStorer/get-current-time@v2 | |
| id: current-time | |
| with: | |
| format: MM/DD/YYYY HH:mm | |
| - name: Set current time as environmental variable | |
| env: | |
| TIME: "${{ steps.current-time.outputs.time }}" | |
| F_TIME: "${{ steps.current-time.outputs.formattedTime }}" | |
| run: | | |
| echo "F_TIME=${{ steps.current-time.outputs.formattedTime }}" >> $GITHUB_ENV | |
| echo "TIME=${{ steps.current-time.outputs.time }}" >> $GITHUB_ENV | |
| echo $TIME | |
| echo $F_TIME | |
| echo "MODFLOW 6 examples: built at ${F_TIME}" | |
| - name: Download mf6examples.pdf build artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: current | |
| path: ./current/ | |
| - name: Download zip_file build artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: zip_files | |
| path: ./current/ | |
| - name: List files in the artifact directory | |
| run: | | |
| pwd | |
| ls -R ./current/ | |
| - name: create bodyFile | |
| run: | | |
| echo "MODFLOW 6 examples: built "${F_TIME} > bodyFile | |
| cat bodyFile | |
| ls -l . | |
| - name: Delete the latest release | |
| if: github.repository_owner == 'MODFLOW-USGS' && github.event_name == 'push' && github.ref_name == 'master' | |
| uses: ame-yu/action-delete-latest-release@v2 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Create/Update the current release | |
| if: github.repository_owner == 'MODFLOW-USGS' && github.event_name == 'push' && github.ref_name == 'master' | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| tag: current | |
| name: current build | |
| bodyFile: ./bodyFile | |
| allowUpdates: true | |
| draft: false | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload MODFLOW 6 examples to the current GitHub release | |
| if: github.repository_owner == 'MODFLOW-USGS' && github.event_name == 'push' && github.ref_name == 'master' | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ./current/* | |
| tag: current | |
| overwrite: true | |
| file_glob: true | |
| - name: Delete all Artifacts | |
| if: github.repository_owner == 'MODFLOW-USGS' && github.event_name == 'push' && github.ref_name == 'master' | |
| uses: GeekyEggo/delete-artifact@v2 | |
| with: | |
| name: | | |
| zip_files | |
| current |