From a63bf57e8459dcb2f678400c9e46b2816f4abe6b Mon Sep 17 00:00:00 2001 From: David Mayer Date: Fri, 25 Mar 2022 10:04:53 -0600 Subject: [PATCH] Update hyperlinks in repository README.md --- README.md | 110 +++++++++++++++++++++++++++--------------------------- 1 file changed, 55 insertions(+), 55 deletions(-) diff --git a/README.md b/README.md index 136d3f5..0c69b7e 100755 --- a/README.md +++ b/README.md @@ -22,116 +22,116 @@ OMOP TABLES LOADED ================== - [PERSON](etl/StandardizedClinicalDataTables/PERSON) - - [patients](https://mimic.physionet.org/mimictables/patients/) - - [admissions](https://mimic.physionet.org/mimictables/admissions/) + - [patients](https://mimic.mit.edu/docs/iii/tables/patients/) + - [admissions](https://mimic.mit.edu/docs/iii/tables/admissions/) - [DEATH](etl/StandardizedClinicalDataTables/DEATH) - - [patients](https://mimic.physionet.org/mimictables/patients/) - - [admissions](https://mimic.physionet.org/mimictables/admissions/) + - [patients](https://mimic.mit.edu/docs/iii/tables/patients/) + - [admissions](https://mimic.mit.edu/docs/iii/tables/admissions/) - [VISIT_OCCURRENCE](etl/StandardizedClinicalDataTables/VISIT_OCCURRENCE) - - [admissions](https://mimic.physionet.org/mimictables/admissions/) + - [admissions](https://mimic.mit.edu/docs/iii/tables/admissions/) - [VISIT_DETAIL](etl/StandardizedClinicalDataTables/VISIT_DETAIL) - - [admissions](https://mimic.physionet.org/mimictables/admissions/) - - [transfers](https://mimic.physionet.org/mimictables/transfers/) - - [service](https://mimic.physionet.org/mimictables/services/) + - [admissions](https://mimic.mit.edu/docs/iii/tables/admissions/) + - [transfers](https://mimic.mit.edu/docs/iii/tables/transfers/) + - [service](https://mimic.mit.edu/docs/iii/tables/services/) - [SPECIMEN](etl/StandardizedClinicalDataTables/SPECIMEN) - - [chartevents](https://mimic.physionet.org/mimictables/chartevents/) - - [labevents](https://mimic.physionet.org/mimictables/labevents/) - - [microbiologyevents](https://mimic.physionet.org/mimictables/microbiologyevents/) + - [chartevents](https://mimic.mit.edu/docs/iii/tables/chartevents/) + - [labevents](https://mimic.mit.edu/docs/iii/tables/labevents/) + - [microbiologyevents](https://mimic.mit.edu/docs/iii/tables/microbiologyevents/) - [MEASUREMENT](etl/StandardizedClinicalDataTables/MEASUREMENT) - - [chartevents](https://mimic.physionet.org/mimictables/chartevents/) - - [labevents](https://mimic.physionet.org/mimictables/labevents/) - - [microbiologyevents](https://mimic.physionet.org/mimictables/microbiologyevents/) - - [outputevents](https://mimic.physionet.org/mimictables/outputevents/) - - [inputevents_mv](https://mimic.physionet.org/mimictables/inputevents_mv/) + - [chartevents](https://mimic.mit.edu/docs/iii/tables/chartevents/) + - [labevents](https://mimic.mit.edu/docs/iii/tables/labevents/) + - [microbiologyevents](https://mimic.mit.edu/docs/iii/tables/microbiologyevents/) + - [outputevents](https://mimic.mit.edu/docs/iii/tables/outputevents/) + - [inputevents_mv](https://mimic.mit.edu/docs/iii/tables/inputevents_mv/) - [PROCEDURE_OCCURRENCE](etl/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE) - - [cptevents](https://mimic.physionet.org/mimictables/cptevents/) - - [procedureevents_mv](https://mimic.physionet.org/mimictables/procedureevents_mv/) - - [procedure_icd](https://mimic.physionet.org/mimictables/procedures_icd/) + - [cptevents](https://mimic.mit.edu/docs/iii/tables/cptevents/) + - [procedureevents_mv](https://mimic.mit.edu/docs/iii/tables/procedureevents_mv/) + - [procedure_icd](https://mimic.mit.edu/docs/iii/tables/procedures_icd/) - [CONDITION_OCCURRENCE](etl/StandardizedClinicalDataTables/CONDITION_OCCURRENCE) - - [admissions](https://mimic.physionet.org/mimictables/admissions/) - - [diagnosis_icd](https://mimic.physionet.org/mimictables/diagnoses_icd/) + - [admissions](https://mimic.mit.edu/docs/iii/tables/admissions/) + - [diagnosis_icd](https://mimic.mit.edu/docs/iii/tables/diagnoses_icd/) - [OBSERVATION](etl/StandardizedClinicalDataTables/OBSERVATION) - - [admissions](https://mimic.physionet.org/mimictables/admissions/) - - [chartevents](https://mimic.physionet.org/mimictables/chartevents/) - - [datetimeevents](https://mimic.physionet.org/mimictables/datetimeevents/) - - [drgcodes](https://mimic.physionet.org/mimictables/drgcodes/) + - [admissions](https://mimic.mit.edu/docs/iii/tables/admissions/) + - [chartevents](https://mimic.mit.edu/docs/iii/tables/chartevents/) + - [datetimeevents](https://mimic.mit.edu/docs/iii/tables/datetimeevents/) + - [drgcodes](https://mimic.mit.edu/docs/iii/tables/drgcodes/) - [DRUG_EXPOSURE](etl/StandardizedClinicalDataTables/DRUG_EXPOSURE) - - [prescriptions](https://mimic.physionet.org/mimictables/prescriptions/) - - [inputevents_cv](https://mimic.physionet.org/mimictables/inputevents_cv/) - - [inputevents_mv](https://mimic.physionet.org/mimictables/inputevents_mv/) + - [prescriptions](https://mimic.mit.edu/docs/iii/tables/prescriptions/) + - [inputevents_cv](https://mimic.mit.edu/docs/iii/tables/inputevents_cv/) + - [inputevents_mv](https://mimic.mit.edu/docs/iii/tables/inputevents_mv/) - [NOTE](etl/StandardizedClinicalDataTables/NOTE) - - [notevents](https://mimic.physionet.org/mimictables/noteevents/) + - [notevents](https://mimic.mit.edu/docs/iii/tables/noteevents/) - [NOTE_NLP](etl/StandardizedClinicalDataTables/NOTE_NLP) - - [notevents](https://mimic.physionet.org/mimictables/noteevents/) + - [notevents](https://mimic.mit.edu/docs/iii/tables/noteevents/) - [COHORT_DEFINITION](etl/StandardizedVocabularies/COHORT_DEFINITION) - [COHORT](etl/StandardizedDerivedElements/COHORT) - [COHORT_ATTRIBUTE](etl/StandardizedDerivedElements//COHORT_ATTRIBUTE) - - [callout](https://mimic.physionet.org/mimictables/callout/) + - [callout](https://mimic.mit.edu/docs/iii/tables/callout/) - [ATTRIBUTE_DEFINITION](etl/StandardizedVocabularies/ATTRIBUTE_DEFINITION) - [CARE_SITE](etl/StandardizedHealthSystemDataTables/CARE_SITE) - - [transfers](https://mimic.physionet.org/mimictables/transfers/) - - [service](https://mimic.physionet.org/mimictables/services/) + - [transfers](https://mimic.mit.edu/docs/iii/tables/transfers/) + - [service](https://mimic.mit.edu/docs/iii/tables/services/) - [PROVIDER](etl/StandardizedHealthSystemDataTables/PROVIDER) - - [caregivers](https://mimic.physionet.org/mimictables/caregivers/) + - [caregivers](https://mimic.mit.edu/docs/iii/tables/caregivers/) [![MIMIC](https://github.com/MIT-LCP/mimic-omop/blob/master/images/mimic.png)](https://mimic.physionet.org/) MIMIC TABLES EQUIVALENCE ======================== -- [patients](https://mimic.physionet.org/mimictables/patients/) +- [patients](https://mimic.mit.edu/docs/iii/tables/patients/) - [PERSON](etl/StandardizedClinicalDataTables/PERSON) - [DEATH](etl/StandardizedClinicalDataTables/DEATH) -- [admissions](https://mimic.physionet.org/mimictables/admissions/) +- [admissions](https://mimic.mit.edu/docs/iii/tables/admissions/) - [PERSON](etl/StandardizedClinicalDataTables/PERSON) - [DEATH](etl/StandardizedClinicalDataTables/DEATH) - [VISIT_OCCURRENCE](etl/StandardizedClinicalDataTables/VISIT_OCCURRENCE) - [VISIT_DETAIL](etl/StandardizedClinicalDataTables/VISIT_DETAIL) - [OBSERVATION](etl/StandardizedClinicalDataTables/OBSERVATION) - [CONDITION_OCCURRENCE](etl/StandardizedClinicalDataTables/CONDITION_OCCURRENCE) -- [transfers](https://mimic.physionet.org/mimictables/transfers/) +- [transfers](https://mimic.mit.edu/docs/iii/tables/transfers/) - [VISIT_DETAIL](etl/StandardizedClinicalDataTables/VISIT_DETAIL) -- [icustays](https://mimic.physionet.org/mimictables/icustays/) +- [icustays](https://mimic.mit.edu/docs/iii/tables/icustays/) - The ICUSTAYS table is fully derived from the transfers table -- [service](https://mimic.physionet.org/mimictables/services/) +- [service](https://mimic.mit.edu/docs/iii/tables/services/) - [VISIT_DETAIL](etl/StandardizedClinicalDataTables/VISIT_DETAIL) -- [prescriptions](https://mimic.physionet.org/mimictables/prescriptions/) +- [prescriptions](https://mimic.mit.edu/docs/iii/tables/prescriptions/) - [DRUG_EXPOSURE](etl/StandardizedClinicalDataTables/DRUG_EXPOSURE) -- [inputevents_cv](https://mimic.physionet.org/mimictables/inputevents_cv/) +- [inputevents_cv](https://mimic.mit.edu/docs/iii/tables/inputevents_cv/) - [DRUG_EXPOSURE](etl/StandardizedClinicalDataTables/DRUG_EXPOSURE) -- [inputevents_mv](https://mimic.physionet.org/mimictables/inputevents_mv/) +- [inputevents_mv](https://mimic.mit.edu/docs/iii/tables/inputevents_mv/) - [DRUG_EXPOSURE](etl/StandardizedClinicalDataTables/DRUG_EXPOSURE) - [MEASUREMENT](etl/StandardizedClinicalDataTables/MEASUREMENT) -- [outputevents](https://mimic.physionet.org/mimictables/outputevents/) +- [outputevents](https://mimic.mit.edu/docs/iii/tables/outputevents/) - [MEASUREMENT](etl/StandardizedClinicalDataTables/MEASUREMENT) -- [labevents](https://mimic.physionet.org/mimictables/labevents/) +- [labevents](https://mimic.mit.edu/docs/iii/tables/labevents/) - [SPECIMEN](etl/StandardizedClinicalDataTables/SPECIMEN) - [MEASUREMENT](etl/StandardizedClinicalDataTables/MEASUREMENT) -- [microbiologyevents](https://mimic.physionet.org/mimictables/microbiologyevents/) +- [microbiologyevents](https://mimic.mit.edu/docs/iii/tables/microbiologyevents/) - [SPECIMEN](etl/StandardizedClinicalDataTables/SPECIMEN) - [MEASUREMENT](etl/StandardizedClinicalDataTables/MEASUREMENT) -- [chartevents](https://mimic.physionet.org/mimictables/chartevents/) +- [chartevents](https://mimic.mit.edu/docs/iii/tables/chartevents/) - [SPECIMEN](etl/StandardizedClinicalDataTables/SPECIMEN) - [MEASUREMENT](etl/StandardizedClinicalDataTables/MEASUREMENT) - [OBSERVATION](etl/StandardizedClinicalDataTables/OBSERVATION) -- [drgcodes](https://mimic.physionet.org/mimictables/drgcodes/) +- [drgcodes](https://mimic.mit.edu/docs/iii/tables/drgcodes/) - [OBSERVATION](etl/StandardizedClinicalDataTables/OBSERVATION) -- [datetimeevents](https://mimic.physionet.org/mimictables/datetimeevents/) +- [datetimeevents](https://mimic.mit.edu/docs/iii/tables/datetimeevents/) - [OBSERVATION](etl/StandardizedClinicalDataTables/OBSERVATION) -- [procedure_icd](https://mimic.physionet.org/mimictables/procedures_icd/) +- [procedure_icd](https://mimic.mit.edu/docs/iii/tables/procedures_icd/) - [PROCEDURE_OCCURRENCE](etl/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE) -- [procedureevents_mv](https://mimic.physionet.org/mimictables/procedureevents_mv/) +- [procedureevents_mv](https://mimic.mit.edu/docs/iii/tables/procedureevents_mv/) - [PROCEDURE_OCCURRENCE](etl/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE) -- [cptevents](https://mimic.physionet.org/mimictables/cptevents/) +- [cptevents](https://mimic.mit.edu/docs/iii/tables/cptevents/) - [PROCEDURE_OCCURRENCE](etl/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE) -- [diagnosis_icd](https://mimic.physionet.org/mimictables/diagnoses_icd/) +- [diagnosis_icd](https://mimic.mit.edu/docs/iii/tables/diagnoses_icd/) - [CONDITION_OCCURRENCE](etl/StandardizedClinicalDataTables/CONDITION_OCCURRENCE) -- [notevents](https://mimic.physionet.org/mimictables/noteevents/) +- [notevents](https://mimic.mit.edu/docs/iii/tables/noteevents/) - [NOTE](etl/StandardizedClinicalDataTables/NOTE) - [NOTE_NLP](etl/StandardizedClinicalDataTables/NOTE_NLP) -- [caregivers](https://mimic.physionet.org/mimictables/caregivers/) +- [caregivers](https://mimic.mit.edu/docs/iii/tables/caregivers/) - [PROVIDER](etl/StandardizedHealthSystemDataTables/PROVIDER) -- [callout](https://mimic.physionet.org/mimictables/callout/) +- [callout](https://mimic.mit.edu/docs/iii/tables/callout/) - [COHORT_ATTRIBUTES](etl/StandardizedDerivedElements/COHORT_ATTRIBUTE)