-
Notifications
You must be signed in to change notification settings - Fork 0
/
NAMESPACE
108 lines (107 loc) · 2.61 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
# Generated by roxygen2: do not edit by hand
export(SP_initialize)
export(SP_install)
export(SP_install_virtualenv)
export(SP_uninstall)
export(adjust_intra_sims)
export(analyse_training)
export(build_PSN)
export(build_adjWJ_PSN)
export(build_avg_PWN)
export(check_vectors)
export(classify_testing)
export(convert_adj2edg)
export(convert_edg2adj)
export(convert_min2h)
export(create_df4attr)
export(do_complete_net)
export(do_standard)
export(do_winz)
export(enrichment_analysis)
export(find_PSN)
export(find_SDR)
export(find_SP)
export(find_SP_env)
export(find_cdf_pathways)
export(get_AUquad)
export(get_AUtri)
export(get_cohesive_score)
export(get_cvXgr)
export(get_lcpm)
export(get_max_ram_used)
export(get_meanXgr)
export(get_pathway_data)
export(get_power)
export(get_propagated)
export(get_rank_01)
export(get_sdXgr)
export(get_subgraph)
export(harm_countsWnet)
export(infer_new_data)
export(plot_PSN)
export(prepare_RNAseq)
export(prepare_data)
export(rem_extreme_sd)
export(remove_duplicates)
export(remove_ending)
export(remove_low_sim)
export(see)
export(set_weak_edges_to_zero)
export(start_monitor_ram)
export(test_SP_py)
export(test_power)
import(Matrix)
import(Rfast)
import(data.table)
import(doParallel)
import(foreach)
import(matrixStats)
import(parallel)
import(qgraph)
import(scales)
import(stats)
importFrom(DescTools,Winsorize)
importFrom(FNN,get.knnx)
importFrom(Rfast,colMads)
importFrom(Rfast,colMedians)
importFrom(Rfast,colmeans)
importFrom(Rfast,comb_n)
importFrom(Rfast,rowMedians)
importFrom(Rfast,rowsums)
importFrom(countTransformers,l2Transformer)
importFrom(data.table,rbindlist)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(edgeR,filterByExpr)
importFrom(igraph,as_adjacency_matrix)
importFrom(igraph,as_data_frame)
importFrom(igraph,as_ids)
importFrom(igraph,degree)
importFrom(igraph,delete.vertices)
importFrom(igraph,ego)
importFrom(igraph,get.adjacency)
importFrom(igraph,graph.data.frame)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,graph_from_edgelist)
importFrom(igraph,make_ego_graph)
importFrom(igraph,simplify)
importFrom(matrixStats,colSds)
importFrom(miRBaseConverter,miRNA_PrecursorToMature)
importFrom(pROC,auc)
importFrom(pROC,roc)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(plyr,mapvalues)
importFrom(reshape2,melt)
importFrom(reticulate,source_python)
importFrom(scales,rescale)
importFrom(splitTools,partition)
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,kmeans)
importFrom(stats,ks.test)
importFrom(stats,na.omit)
importFrom(utils,combn)
importFrom(utils,packageVersion)